RchiOBHm_Chr4g0445611
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013661
Physical Location & Seq
Forward (+)
66020842 .. 66024454
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41320

Sequence Viewer

Length: 921 bp
ATGAGTACTAGCAGTAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAAGTGCCTCGTCTCAGGTGGACTCCTGAGCTTCATCACTGCTTTGTTCAAGCCATTGAGAGGCTTGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGATTATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGACCTTAGTAGAGCACCTGCAGATGGGAGTTTCACGCAGCAAAGAAAGCAAAGTTTTGAAGAGCATAGTGATGGGTGTCTTGATCATGAAGTAAATGTTATGGGTTTGGTCTCGGCTTCAAAACTCATCCCGGAATCAGATCCTCAGGTCATCTATAGTGTTCCACGCCGGTCAAAACCCATCAGAGAATCAGATCCTCAGGCCATCTACACTAATCCCAGCAGTTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAGTCTCAGAGCAGCAGCAGCGGCAATGGAGCCAAACAACACATGAAACGGCACCGTACACTTTTAATGATTACGGCGGGGTGCTGGCAAATGGGGTGTCTCTGCCACAGCAGCATCATTTTCTTTACAACTTCAACCCCTTCTTCAAATCTGCATTGCAGGAATCTGATTTCTTCAAGATTGATGAAAAGCATGAACTGAAAATGCATAAACAGGAGAGTAGAGGAAGAGCACTCACCGAAGGTGGAGACTGTCAGTTATCGTTGTCTCTCTCGTTGCCTCATCCCTCTTCTCACATGAGCAATGCTTCTTCAAGTGAAGAGATGGGTGGTGCAATCTCATCATTAAAATATAAAGACTGTTCTGCCTTTTCTTCGGCAAGTCGTGGTGTTGATTTGAATCTTTCCATTGCTCTCTGTGGTAACTGA

Protein Analysis

306

Amino Acids

34.03

Weight (kDa)

8.92

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 544
AciI CCGC 2 cut(s) 514, 570
AclWI GGATC 3 cut(s) 48, 368, 422
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 2 cut(s) 7, 551
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 257
AgsI TTSAA 9 cut(s) 107, 293, 354, 462, 628, 640, 670, 807, 892
AluBI AGCT 4 cut(s) 18, 88, 470, 489
AluI AGCT 4 cut(s) 18, 88, 470, 489
Alw21I GWGCWC 2 cut(s) 250, 727
Alw26I GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
AlwI GGATC 3 cut(s) 48, 368, 422
AlwNI CAGNNNCTG 1 cut(s) 18
AoxI GGCC 3 cut(s) 41, 127, 435
ApeKI GCWGC 5 cut(s) 271, 505, 508, 511, 604
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 175, 245, 721
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 1 cut(s) 544
Bbv12I GWGCWC 2 cut(s) 250, 727
BbvI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BccI CCATC 6 cut(s) 213, 251, 299, 422, 446, 811
BceAI ACGGC 2 cut(s) 558, 583
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BfaI CTAG 2 cut(s) 9, 471
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
BlsI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 524, 546
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 349
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 257
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 4 cut(s) 524, 647, 802, 900
Bse8I GATNNNNATC 1 cut(s) 891
BseGI GGATG 3 cut(s) 175, 360, 775
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BseMI GCAATG 4 cut(s) 524, 647, 802, 900
BseMII CTCAG 5 cut(s) 75, 85, 392, 446, 513
BseXI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 3 cut(s) 43, 129, 437
BshNI GGYRCC 1 cut(s) 544
BsiHKAI GWGCWC 2 cut(s) 250, 727
BsiSI CCGG 2 cut(s) 365, 403
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BsmAI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BsmBI CGTCTC 2 cut(s) 74, 473
BsnI GGCC 3 cut(s) 43, 129, 437
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 250, 727
Bsp143I GATC 4 cut(s) 53, 316, 373, 427
BspACI CCGC 2 cut(s) 514, 570
BspANI GGCC 3 cut(s) 43, 129, 437
BspCNI CTCAG 5 cut(s) 76, 84, 391, 445, 512
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 524, 546
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 48, 368, 422
BspQI GCTCTTC 2 cut(s) 288, 715
BspT107I GGYRCC 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 4 cut(s) 524, 647, 802, 900
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssMI GATC 4 cut(s) 53, 316, 373, 427
Bst4CI ACNGT 3 cut(s) 549, 746, 854
Bst6I CTCTTC 4 cut(s) 288, 715, 787, 807
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 175, 360, 775
BstKTI GATC 4 cut(s) 56, 319, 376, 430
BstMAI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BstMBI GATC 4 cut(s) 53, 316, 373, 427
BstMWI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 2 cut(s) 252, 388
BstV1I GCAGC 5 cut(s) 283, 517, 520, 523, 616
BstX2I RGATCY 3 cut(s) 53, 373, 427
BstYI RGATCY 3 cut(s) 53, 373, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 3 cut(s) 43, 129, 437
BtsCI GGATG 3 cut(s) 175, 360, 775
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 2 cut(s) 6, 550
CviAII CATG 6 cut(s) 194, 226, 320, 536, 686, 790
CviQI GTAC 2 cut(s) 6, 550
DdeI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
DpnI GATC 4 cut(s) 55, 318, 375, 429
DpnII GATC 4 cut(s) 53, 316, 373, 427
Eam1104I CTCTTC 4 cut(s) 288, 715, 787, 807
EarI CTCTTC 4 cut(s) 288, 715, 787, 807
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 702
Esp3I CGTCTC 2 cut(s) 74, 473
FaeI CATG 6 cut(s) 197, 229, 323, 539, 689, 793
FatI CATG 6 cut(s) 193, 225, 319, 535, 685, 789
FauI CCCGC 1 cut(s) 563
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FokI GGATG 3 cut(s) 182, 347, 762
Fsp4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FspBI CTAG 2 cut(s) 9, 471
GluI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 43, 129, 437
HapII CCGG 2 cut(s) 365, 403
Hin1II CATG 6 cut(s) 197, 229, 323, 539, 689, 793
HinfI GANTC 7 cut(s) 79, 180, 368, 422, 474, 656, 892
HpaII CCGG 2 cut(s) 365, 403
HphI GGTGA 3 cut(s) 175, 245, 721
Hpy166II GTNNAC 2 cut(s) 78, 552
Hpy188I TCNGA 6 cut(s) 162, 373, 419, 427, 502, 661
Hpy188III TCNNGA 6 cut(s) 83, 211, 314, 320, 478, 670
Hpy8I GTNNAC 2 cut(s) 78, 552
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 643, 728
HpyCH4III ACNGT 3 cut(s) 549, 746, 854
HpyCH4V TGCA 5 cut(s) 254, 647, 652, 700, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
HpyF3I CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
Hsp92II CATG 6 cut(s) 197, 229, 323, 539, 689, 793
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 53, 316, 373, 427
LguI GCTCTTC 2 cut(s) 288, 715
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 5 cut(s) 283, 517, 520, 523, 616
LweI GCATC 1 cut(s) 616
MaeI CTAG 2 cut(s) 9, 471
MaeIII GTNAC 2 cut(s) 233, 914
MalI GATC 4 cut(s) 55, 318, 375, 429
MboI GATC 4 cut(s) 53, 316, 373, 427
MflI RGATCY 3 cut(s) 53, 373, 427
MhlI GDGCHC 2 cut(s) 250, 727
MlyI GAGTC 2 cut(s) 73, 174
MnlI CCTC 9 cut(s) 75, 111, 119, 222, 387, 441, 710, 783, 790
Mph1103I ATGCAT 1 cut(s) 702
MseI TTAA 2 cut(s) 558, 839
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 2 cut(s) 365, 403
MspR9I CCNGG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 53, 316, 373, 427
NlaIII CATG 6 cut(s) 197, 229, 323, 539, 689, 793
NlaIV GGNNCC 2 cut(s) 524, 546
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 702
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 288, 715
PfeI GAWTC 5 cut(s) 368, 422, 474, 656, 892
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 524, 546
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 53, 373, 427
RsaI GTAC 2 cut(s) 7, 551
RsaNI GTAC 2 cut(s) 6, 550
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 2 cut(s) 288, 715
SaqAI TTAA 2 cut(s) 558, 839
SatI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
Sau3AI GATC 4 cut(s) 53, 316, 373, 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 2 cut(s) 250, 727
SetI ASST 9 cut(s) 20, 77, 90, 240, 253, 384, 472, 491, 739
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 2 cut(s) 252, 388
SmiMI CAYNNNNRTG 1 cut(s) 303
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 514, 570
SspMI CTAG 2 cut(s) 9, 471
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 549, 746, 854
TaqI TCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 5 cut(s) 368, 422, 474, 656, 892
Tru1I TTAA 2 cut(s) 558, 839
Tru9I TTAA 2 cut(s) 558, 839
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 271, 505, 508, 511, 604
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 80, 336, 552, 693, 702
TspRI CASTG 1 cut(s) 101
XspI CTAG 2 cut(s) 9, 471
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.