Rroxscaffold_5G00386090
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013661
Physical Location & Seq
Forward (+)
65038150 .. 65041396
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386090.1

Sequence Viewer

Length: 924 bp
ATGAGTACTAGTAGTAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAAGTGCCTCGTCTGAGGTGGACTCCTGAGCTTCATCATTGCTTTGTTCAAGCCATAGAGAGGCTTGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGATTATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGACCTTAGTAGAGCACCTGCAGATGGGAGTTTCACGCAGCAAAGAAAGCAAAGTTTTGAAGAGCATAGTGATGGGTGTCTTGATCATGAAGTAAATGTTATGGGTGTACTATCGGCTTCAAAACTCATCCCGGAATCAAATCCTCAGGTCATCTACAGTGTTCCACGCCGGTCAAAACCCATCAGAGAATCAGATCCTCAGGCCATCTACACTAATCCCAGCAGTTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAGTCTCAGAGCAGCAGCAGCAGCAGCAATGGAGCCAAACAACACATGAAACGGCACCGTACACTTTTGATGATTATGGCCGGGTGCTGGCAAGTGGGGTGTCTCTGCCACAGCAGCATCATTTTCTTTACAACTTCAACCCCTTCTTCAAATCTGCATTGCAAGAATCTGATTTCTTCAAGATTGATGAAAAGCATGAACTGAAAATGCATAAACAGGAGAGTAGAGGAAGAGCACACACCGAAGGTGGAGACTGTCAGTTATCGTTGTCTCTCTCGTTGCCTCATCCCTCTTCTCACATGAGCAATGCTTCTTCAAGTGAAGAGATGGGTGGTGCAATCTCATCATTAAACTATAAAGACTGTTCTGCCTTTTCTTCGGCAAATCGCGGTGTTGATTTGAATCTTTCCATTGCTCTCTGTGGTAACTGA

Protein Analysis

307

Amino Acids

34.24

Weight (kDa)

8.79

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 547
AccII CGCG 1 cut(s) 882
AciI CCGC 1 cut(s) 882
AclWI GGATC 2 cut(s) 48, 422
AcoI YGGCCR 1 cut(s) 571
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 3 cut(s) 7, 342, 554
AfiI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 580
AgsI TTSAA 9 cut(s) 107, 293, 354, 462, 631, 643, 673, 810, 895
AhlI ACTAGT 1 cut(s) 8
AluBI AGCT 4 cut(s) 18, 88, 470, 489
AluI AGCT 4 cut(s) 18, 88, 470, 489
Alw21I GWGCWC 2 cut(s) 250, 730
Alw26I GTCTC 5 cut(s) 473, 502, 600, 738, 768
AlwI GGATC 2 cut(s) 48, 422
AoxI GGCC 4 cut(s) 41, 127, 435, 571
ApeKI GCWGC 7 cut(s) 271, 505, 508, 511, 514, 517, 607
AsuC2I CCSGG 2 cut(s) 365, 575
AsuHPI GGTGA 2 cut(s) 175, 245
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 250, 730
BbvI GCAGC 7 cut(s) 283, 517, 520, 523, 526, 529, 619
BccI CCATC 6 cut(s) 213, 251, 299, 422, 446, 814
BceAI ACGGC 1 cut(s) 561
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 2 cut(s) 365, 575
BcoDI GTCTC 5 cut(s) 473, 502, 600, 738, 768
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 471
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 7 cut(s) 272, 506, 509, 512, 515, 518, 608
BlsI GCNGC 7 cut(s) 273, 507, 510, 513, 516, 519, 609
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 365, 575
BmiI GGNNCC 2 cut(s) 527, 549
BmrFI CCNGG 2 cut(s) 365, 575
BmsI GCATC 1 cut(s) 619
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 365, 575
BsaBI GATNNNNATC 1 cut(s) 894
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 136, 257, 580
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 5 cut(s) 94, 527, 650, 805, 903
Bse8I GATNNNNATC 1 cut(s) 894
BseGI GGATG 3 cut(s) 175, 360, 778
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 580
BseMI GCAATG 5 cut(s) 94, 527, 650, 805, 903
BseMII CTCAG 5 cut(s) 62, 75, 392, 446, 513
BseXI GCAGC 7 cut(s) 283, 517, 520, 523, 526, 529, 619
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 882
BshFI GGCC 4 cut(s) 43, 129, 437, 573
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 250, 730
BsiSI CCGG 3 cut(s) 365, 403, 574
BslI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 580
BsmAI GTCTC 5 cut(s) 473, 502, 600, 738, 768
BsmBI CGTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 43, 129, 437, 573
Bsp1286I GDGCHC 2 cut(s) 250, 730
Bsp143I GATC 3 cut(s) 53, 316, 427
BspACI CCGC 1 cut(s) 882
BspANI GGCC 4 cut(s) 43, 129, 437, 573
BspCNI CTCAG 5 cut(s) 63, 76, 391, 445, 512
BspFNI CGCG 1 cut(s) 882
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 527, 549
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 2 cut(s) 48, 422
BspQI GCTCTTC 2 cut(s) 288, 718
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 5 cut(s) 94, 527, 650, 805, 903
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssMI GATC 3 cut(s) 53, 316, 427
Bst4CI ACNGT 4 cut(s) 392, 552, 749, 857
Bst6I CTCTTC 4 cut(s) 288, 718, 790, 810
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 175, 360, 778
BstFNI CGCG 1 cut(s) 882
BstKTI GATC 3 cut(s) 56, 319, 430
BstMAI GTCTC 5 cut(s) 473, 502, 600, 738, 768
BstMBI GATC 3 cut(s) 53, 316, 427
BstMWI GCNNNNNNNGC 5 cut(s) 280, 511, 514, 517, 607
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 363, 573
BstSFI CTRYAG 2 cut(s) 252, 388
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 7 cut(s) 283, 517, 520, 523, 526, 529, 619
BstX2I RGATCY 2 cut(s) 53, 427
BstYI RGATCY 2 cut(s) 53, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 4 cut(s) 43, 129, 437, 573
BtsCI GGATG 3 cut(s) 175, 360, 778
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 582
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 3 cut(s) 6, 341, 553
CviAII CATG 6 cut(s) 194, 226, 320, 539, 689, 793
CviQI GTAC 3 cut(s) 6, 341, 553
DdeI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
DpnI GATC 3 cut(s) 55, 318, 429
DpnII GATC 3 cut(s) 53, 316, 427
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 4 cut(s) 288, 718, 790, 810
EarI CTCTTC 4 cut(s) 288, 718, 790, 810
Eco147I AGGCCT 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 705
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 6 cut(s) 197, 229, 323, 542, 692, 796
FatI CATG 6 cut(s) 193, 225, 319, 538, 688, 792
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 7 cut(s) 272, 506, 509, 512, 515, 518, 608
FokI GGATG 3 cut(s) 182, 347, 765
Fsp4HI GCNGC 7 cut(s) 272, 506, 509, 512, 515, 518, 608
FspBI CTAG 2 cut(s) 9, 471
GluI GCNGC 7 cut(s) 272, 506, 509, 512, 515, 518, 608
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 4 cut(s) 43, 129, 437, 573
HapII CCGG 3 cut(s) 365, 403, 574
Hin1II CATG 6 cut(s) 197, 229, 323, 542, 692, 796
HinfI GANTC 7 cut(s) 79, 180, 368, 422, 474, 659, 895
HpaII CCGG 3 cut(s) 365, 403, 574
HphI GGTGA 2 cut(s) 175, 245
Hpy166II GTNNAC 3 cut(s) 78, 341, 555
Hpy188I TCNGA 6 cut(s) 72, 162, 419, 427, 502, 664
Hpy188III TCNNGA 6 cut(s) 83, 211, 314, 320, 478, 673
Hpy8I GTNNAC 3 cut(s) 78, 341, 555
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 646, 731
HpyCH4III ACNGT 4 cut(s) 392, 552, 749, 857
HpyCH4V TGCA 5 cut(s) 254, 650, 655, 703, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 511, 514, 517, 607
HpyF3I CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
Hsp92II CATG 6 cut(s) 197, 229, 323, 542, 692, 796
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 53, 316, 427
LguI GCTCTTC 2 cut(s) 288, 718
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 7 cut(s) 283, 517, 520, 523, 526, 529, 619
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 9, 471
MaeIII GTNAC 2 cut(s) 233, 917
MalI GATC 3 cut(s) 55, 318, 429
MboI GATC 3 cut(s) 53, 316, 427
MflI RGATCY 2 cut(s) 53, 427
MhlI GDGCHC 2 cut(s) 250, 730
MlyI GAGTC 2 cut(s) 73, 174
Mph1103I ATGCAT 1 cut(s) 705
MseI TTAA 1 cut(s) 842
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 3 cut(s) 365, 403, 574
MspR9I CCNGG 2 cut(s) 365, 575
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 5 cut(s) 280, 511, 514, 517, 607
NciI CCSGG 2 cut(s) 365, 575
NdeII GATC 3 cut(s) 53, 316, 427
NlaIII CATG 6 cut(s) 197, 229, 323, 542, 692, 796
NlaIV GGNNCC 2 cut(s) 527, 549
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 705
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 288, 718
PfeI GAWTC 5 cut(s) 368, 422, 474, 659, 895
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 7 cut(s) 273, 507, 510, 513, 516, 519, 609
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 527, 549
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 2 cut(s) 53, 427
RsaI GTAC 3 cut(s) 7, 342, 554
RsaNI GTAC 3 cut(s) 6, 341, 553
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 2 cut(s) 288, 718
SaqAI TTAA 1 cut(s) 842
SatI GCNGC 7 cut(s) 272, 506, 509, 512, 515, 518, 608
Sau3AI GATC 3 cut(s) 53, 316, 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 2 cut(s) 365, 575
SduI GDGCHC 2 cut(s) 250, 730
SetI ASST 9 cut(s) 20, 77, 90, 240, 253, 384, 472, 491, 742
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 2 cut(s) 252, 388
SmiMI CAYNNNNRTG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 1 cut(s) 882
SspMI CTAG 2 cut(s) 9, 471
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 363, 573
TaaI ACNGT 4 cut(s) 392, 552, 749, 857
TaqI TCGA 1 cut(s) 477
TatI WGTACW 2 cut(s) 5, 340
TfiI GAWTC 5 cut(s) 368, 422, 474, 659, 895
Tru1I TTAA 1 cut(s) 842
Tru9I TTAA 1 cut(s) 842
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 7 cut(s) 271, 505, 508, 511, 514, 517, 607
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 80, 336, 555, 696, 705
TspRI CASTG 1 cut(s) 397
XspI CTAG 2 cut(s) 9, 471
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.