Rh4DG433100
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013661
Physical Location & Seq
Forward (+)
63667034 .. 63670373
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG433100.1

Sequence Viewer

Length: 894 bp
ATGAGTACTAGCAGTAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAAGTGCCTCGTCTCAGGTGGACTCCTGAGCTTCATCACTGCTTTGTTCAAGCCATTGAGAGGCTTGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGATTATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGACCTTAGTAGAGCACCTGCAGATGGGAGTTTCACGCAGCAAAGAAAGCAAAGTTTTGAAGAGCATAGTGATGGGTGTCTTGATCATGAAGTAAATGTTATGGGTTTGGTCTCGGCTTCAAAACTCATCCCGGAATCAGATCCTCAGGTCATCTATAGTGTTCCACGCCGGTCAAAACCCATCAGAGAATCAGATCCTCAGGCCATCTACACTAATCCCAGCAGTTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAGTCTCAGAGCAGCAGCAGCGGCAATGGAGCCAAACAACACATGAAACGGCACCGTACACTTTTAATGATTACGGCGGGGTGCTGGCAAATGGGGTGTCTCTGCCACAGCAGCATCATTTTCTTTACAACTTCAACCCCTTCTTCAAATCTGCATTGCAGGAATCTGATTTCTTCAAGGTACCCAGCAAACAAAAACCGTTCTCGTTATACTCTCAATTTTTCTTTAATGAAGTGTCTAGTACTGGTTTCAAATTTCCAACTTTAGTTTTTTTTTTTAAAGTCAACCTACGTCACGTGTATGGCTTAACAGTAGTAGTTCGTAACTTATGGCAGATTCTCCTTAGTCCAAAGTACCTCCAAATTTTACTAGATGGGAAAATAAAGGTCCCTTCTTTTTAA

Protein Analysis

297

Amino Acids

33.88

Weight (kDa)

9.78

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
Acc65I GGTACC 1 cut(s) 673
AccB1I GGYRCC 2 cut(s) 544, 673
AciI CCGC 2 cut(s) 514, 570
AclWI GGATC 3 cut(s) 48, 368, 422
AcsI RAATTY 2 cut(s) 746, 855
AcuI CTGAAG 1 cut(s) 143
AcvI CACGTG 1 cut(s) 790
AfaI GTAC 5 cut(s) 7, 551, 675, 736, 848
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 257
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 8 cut(s) 107, 293, 354, 462, 628, 640, 670, 745
AluBI AGCT 4 cut(s) 18, 88, 470, 489
AluI AGCT 4 cut(s) 18, 88, 470, 489
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 5 cut(s) 74, 349, 473, 502, 597
AlwI GGATC 3 cut(s) 48, 368, 422
AlwNI CAGNNNCTG 1 cut(s) 18
AoxI GGCC 3 cut(s) 41, 127, 435
ApeKI GCWGC 5 cut(s) 271, 505, 508, 511, 604
ApoI RAATTY 2 cut(s) 746, 855
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp718I GGTACC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 880
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 175, 245
AvaII GGWCC 1 cut(s) 880
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 2 cut(s) 544, 673
BbrPI CACGTG 1 cut(s) 790
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BccI CCATC 6 cut(s) 213, 251, 299, 422, 446, 860
BceAI ACGGC 2 cut(s) 558, 583
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 5 cut(s) 74, 349, 473, 502, 597
BfaI CTAG 4 cut(s) 9, 471, 732, 863
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
BlsI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
BmcAI AGTACT 2 cut(s) 7, 736
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 880
BmgT120I GGNCC 1 cut(s) 880
BmiI GGNNCC 4 cut(s) 524, 546, 675, 882
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 349
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 257
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 742
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 2 cut(s) 524, 647
BseGI GGATG 2 cut(s) 175, 360
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BseMI GCAATG 2 cut(s) 524, 647
BseMII CTCAG 5 cut(s) 75, 85, 392, 446, 513
BseNI ACTGG 1 cut(s) 742
BseXI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BseYI CCCAGC 2 cut(s) 452, 677
BshFI GGCC 3 cut(s) 43, 129, 437
BshNI GGYRCC 2 cut(s) 544, 673
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 365, 403
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BsmAI GTCTC 5 cut(s) 74, 349, 473, 502, 597
BsmBI CGTCTC 2 cut(s) 74, 473
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 3 cut(s) 43, 129, 437
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 53, 316, 373, 427
BspACI CCGC 2 cut(s) 514, 570
BspANI GGCC 3 cut(s) 43, 129, 437
BspCNI CTCAG 5 cut(s) 76, 84, 391, 445, 512
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 4 cut(s) 524, 546, 675, 882
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 48, 368, 422
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 2 cut(s) 544, 673
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 524, 647
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 742
BssAI RCCGGY 1 cut(s) 402
BssMI GATC 4 cut(s) 53, 316, 373, 427
Bst4CI ACNGT 3 cut(s) 549, 693, 805
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 7 cut(s) 71, 84, 239, 378, 432, 499, 836
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 175, 360
BstKTI GATC 4 cut(s) 56, 319, 376, 430
BstMAI GTCTC 5 cut(s) 74, 349, 473, 502, 597
BstMBI GATC 4 cut(s) 53, 316, 373, 427
BstMWI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 2 cut(s) 252, 388
BstV1I GCAGC 5 cut(s) 283, 517, 520, 523, 616
BstX2I RGATCY 3 cut(s) 53, 373, 427
BstYI RGATCY 3 cut(s) 53, 373, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 3 cut(s) 43, 129, 437
BtsCI GGATG 2 cut(s) 175, 360
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 880
Csp6I GTAC 5 cut(s) 6, 550, 674, 735, 847
CviAII CATG 4 cut(s) 194, 226, 320, 536
CviQI GTAC 5 cut(s) 6, 550, 674, 735, 847
DdeI CTNAG 7 cut(s) 71, 84, 239, 378, 432, 499, 836
DpnI GATC 4 cut(s) 55, 318, 375, 429
DpnII GATC 4 cut(s) 53, 316, 373, 427
DraI TTTAAA 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 143
Eco72I CACGTG 1 cut(s) 790
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 880
EcoO65I GGTNACC 1 cut(s) 233
Esp3I CGTCTC 2 cut(s) 74, 473
FaeI CATG 4 cut(s) 197, 229, 323, 539
FaqI GGGAC 1 cut(s) 866
FatI CATG 4 cut(s) 193, 225, 319, 535
FauI CCCGC 1 cut(s) 563
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FokI GGATG 2 cut(s) 182, 347
Fsp4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FspBI CTAG 4 cut(s) 9, 471, 732, 863
GluI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
GsaI CCCAGC 2 cut(s) 456, 681
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 43, 129, 437
HapII CCGG 2 cut(s) 365, 403
Hin1II CATG 4 cut(s) 197, 229, 323, 539
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 7 cut(s) 79, 180, 368, 422, 474, 656, 829
HpaII CCGG 2 cut(s) 365, 403
HphI GGTGA 2 cut(s) 175, 245
Hpy166II GTNNAC 3 cut(s) 78, 552, 778
Hpy188I TCNGA 6 cut(s) 162, 373, 419, 427, 502, 661
Hpy188III TCNNGA 5 cut(s) 83, 211, 314, 320, 478
Hpy8I GTNNAC 3 cut(s) 78, 552, 778
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 643, 894
HpyCH4III ACNGT 3 cut(s) 549, 693, 805
HpyCH4IV ACGT 2 cut(s) 784, 789
HpyCH4V TGCA 3 cut(s) 254, 647, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
HpyF3I CTNAG 7 cut(s) 71, 84, 239, 378, 432, 499, 836
HpySE526I ACGT 2 cut(s) 784, 789
Hsp92II CATG 4 cut(s) 197, 229, 323, 539
KpnI GGTACC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 53, 316, 373, 427
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 5 cut(s) 283, 517, 520, 523, 616
LweI GCATC 1 cut(s) 616
MaeI CTAG 4 cut(s) 9, 471, 732, 863
MaeII ACGT 2 cut(s) 784, 789
MaeIII GTNAC 3 cut(s) 233, 785, 815
MalI GATC 4 cut(s) 55, 318, 375, 429
MboI GATC 4 cut(s) 53, 316, 373, 427
MboII GAAGA 5 cut(s) 36, 149, 305, 628, 658
MflI RGATCY 3 cut(s) 53, 373, 427
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 3 cut(s) 710, 746, 855
MlyI GAGTC 2 cut(s) 73, 174
MmeI TCCRAC 1 cut(s) 776
MnlI CCTC 7 cut(s) 75, 111, 119, 222, 387, 441, 860
MseI TTAA 5 cut(s) 558, 720, 771, 800, 892
MslI CAYNNNNRTG 2 cut(s) 303, 792
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 2 cut(s) 365, 403
MspR9I CCNGG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 53, 316, 373, 427
NlaIII CATG 4 cut(s) 197, 229, 323, 539
NlaIV GGNNCC 4 cut(s) 524, 546, 675, 882
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 2 cut(s) 233, 785
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 5 cut(s) 368, 422, 474, 656, 829
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
PleI GAGTC 2 cut(s) 73, 174
PmaCI CACGTG 1 cut(s) 790
PmlI CACGTG 1 cut(s) 790
PpsI GAGTC 2 cut(s) 73, 174
Ppu21I YACGTR 1 cut(s) 790
PpuMI RGGWCCY 1 cut(s) 880
Psp5II RGGWCCY 1 cut(s) 880
PspCI CACGTG 1 cut(s) 790
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 2 cut(s) 452, 677
PspN4I GGNNCC 4 cut(s) 524, 546, 675, 882
PspPI GGNCC 1 cut(s) 880
PspPPI RGGWCCY 1 cut(s) 880
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 53, 373, 427
RsaI GTAC 5 cut(s) 7, 551, 675, 736, 848
RsaNI GTAC 5 cut(s) 6, 550, 674, 735, 847
RseI CAYNNNNRTG 2 cut(s) 303, 792
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 5 cut(s) 558, 720, 771, 800, 892
SatI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
Sau3AI GATC 4 cut(s) 53, 316, 373, 427
Sau96I GGNCC 1 cut(s) 880
ScaI AGTACT 2 cut(s) 7, 736
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 2 cut(s) 252, 388
SinI GGWCC 1 cut(s) 880
SmiMI CAYNNNNRTG 2 cut(s) 303, 792
Sse9I AATT 3 cut(s) 710, 746, 855
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 514, 570
SspMI CTAG 4 cut(s) 9, 471, 732, 863
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 549, 693, 805
TaiI ACGT 2 cut(s) 787, 792
TaqI TCGA 1 cut(s) 477
TasI AATT 3 cut(s) 710, 746, 855
TatI WGTACW 2 cut(s) 5, 734
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 5 cut(s) 368, 422, 474, 656, 829
Tru1I TTAA 5 cut(s) 558, 720, 771, 800, 892
Tru9I TTAA 5 cut(s) 558, 720, 771, 800, 892
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 2 cut(s) 233, 785
TseI GCWGC 5 cut(s) 271, 505, 508, 511, 604
Tsp45I GTSAC 2 cut(s) 233, 785
TspDTI ATGAA 4 cut(s) 80, 336, 552, 738
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 880
XapI RAATTY 2 cut(s) 746, 855
XspI CTAG 4 cut(s) 9, 471, 732, 863
ZrmI AGTACT 2 cut(s) 7, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.