Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000107.1

Orthogroup ID

OG0013661

Physical Location & Seq

Genomic Coordinates Forward (+)

26525 .. 27747

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000107.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgagtactagcagtagctgtggaagaaatggtgctgttaggccttatataagatccaaagtgcctcgtctcaggtggactcctgagcttcatcactgctttgttcaagccattgagaggcttggaggccataaaaaggctactccaaaacttgttcttcagattatggatgtcaaaggactcaccatttctcatgtcaaaagccatctccagatgtttagaagcatgaggggtgaccttagtagagcacctgcagatgggagtttcacgcagcatagaaagcaaagttttgaagagcatagtgatgggtgtcttgatcaagaagtaaatgttatgggtttgctctcggcttcaaaactcatcccggaatcagatcctcaggtcatctacagtgttccacgccggtcaaaacccatcagagaatcagatcctcaggccatctacactaatcccagcagttcaaaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

9.96

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35980
malus_domestica	MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica	Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis	pycom13g01120 pycom16g00990
rosa_chinensis	RchiOBHm_Chr4g0445611
rosa_laevigata	RLG00000005725
rosa_multiflora	Rmu_ssc0000107.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386090
rosa_rugosa	Rorug04G0363000
rosa_samantha	Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana	Rw4G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AclWI	GGATC	3 cut(s)	48, 368, 422
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	117, 136, 257
AgsI	TTSAA	4 cut(s)	107, 293, 354, 462
AluBI	AGCT	2 cut(s)	18, 88
AluI	AGCT	2 cut(s)	18, 88
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	48, 368, 422
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	3 cut(s)	41, 127, 435
ApeKI	GCWGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	175, 245
AxyI	CCTNAGG	2 cut(s)	378, 432
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	5 cut(s)	213, 251, 299, 422, 446
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	252, 388
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 136, 257
Bse118I	RCCGGY	1 cut(s)	402
Bse21I	CCTNAGG	2 cut(s)	378, 432
BseGI	GGATG	2 cut(s)	175, 360
BseLI	CCNNNNNNNGG	3 cut(s)	117, 136, 257
BseMII	CTCAG	4 cut(s)	75, 85, 392, 446
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	3 cut(s)	43, 129, 437
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	365, 403
BslI	CCNNNNNNNGG	3 cut(s)	117, 136, 257
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	43, 129, 437
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	53, 316, 373, 427
BspANI	GGCC	3 cut(s)	43, 129, 437
BspCNI	CTCAG	4 cut(s)	76, 84, 391, 445
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	48, 368, 422
BspQI	GCTCTTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	402
BssMI	GATC	4 cut(s)	53, 316, 373, 427
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	5 cut(s)	71, 84, 239, 378, 432
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	175, 360
BstKTI	GATC	4 cut(s)	56, 319, 376, 430
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	53, 316, 373, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	2 cut(s)	252, 388
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	53, 373, 427
BstYI	RGATCY	3 cut(s)	53, 373, 427
Bsu36I	CCTNAGG	2 cut(s)	378, 432
BsuRI	GGCC	3 cut(s)	43, 129, 437
BtsCI	GGATG	2 cut(s)	175, 360
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 397
BveI	ACCTGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	194, 226
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	71, 84, 239, 378, 432
DpnI	GATC	4 cut(s)	55, 318, 375, 429
DpnII	GATC	4 cut(s)	53, 316, 373, 427
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	2 cut(s)	378, 432
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	197, 229
FaiI	YATR	9 cut(s)	48, 50, 132, 167, 195, 227, 276, 300, 335
FatI	CATG	2 cut(s)	193, 225
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	182, 347
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	43, 129, 437
HapII	CCGG	2 cut(s)	365, 403
Hin1II	CATG	2 cut(s)	197, 229
HinfI	GANTC	4 cut(s)	79, 180, 368, 422
HpaII	CCGG	2 cut(s)	365, 403
HphI	GGTGA	2 cut(s)	175, 245
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	4 cut(s)	162, 373, 419, 427
Hpy188III	TCNNGA	4 cut(s)	83, 211, 314, 320
Hpy8I	GTNNAC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	5 cut(s)	71, 84, 239, 378, 432
Hsp92II	CATG	2 cut(s)	197, 229
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	53, 316, 373, 427
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	58, 96, 224, 264, 365, 378, 416, 419, 466
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	55, 318, 375, 429
MboI	GATC	4 cut(s)	53, 316, 373, 427
MboII	GAAGA	3 cut(s)	36, 149, 305
MflI	RGATCY	3 cut(s)	53, 373, 427
MhlI	GDGCHC	1 cut(s)	250
MlyI	GAGTC	2 cut(s)	73, 174
MnlI	CCTC	6 cut(s)	75, 111, 119, 222, 387, 441
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	2 cut(s)	365, 403
MspR9I	CCNGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	4 cut(s)	53, 316, 373, 427
NlaIII	CATG	2 cut(s)	197, 229
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	368, 422
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	2 cut(s)	73, 174
PpsI	GAGTC	2 cut(s)	73, 174
PspEI	GGTNACC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	3 cut(s)	53, 373, 427
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	4 cut(s)	53, 316, 373, 427
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	2 cut(s)	73, 174
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	7 cut(s)	20, 77, 90, 240, 253, 384, 470
SfcI	CTRYAG	2 cut(s)	252, 388
SmiMI	CAYNNNNRTG	1 cut(s)	303
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	392
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	2 cut(s)	368, 422
TscAI	CASTG	2 cut(s)	101, 397
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	101, 397
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.