MD13G1013200.v1.1
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013661
Physical Location & Seq
Reverse (-)
825032 .. 829080
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1013200.v1.1.491

Sequence Viewer

Length: 846 bp
ATGACTACAAGTAGTTGCAGTGCAAGGAACGGCGCTGTTAGGCAGTATGTGAGATCCAAGGTGCCTCGTTTGAGATGGACTCCTGAGCTTCATCGCTGCTTTCTTCAGGCCATCGAAAGGCTCGGAGGCCATAGAAAGGCTACTCCAAAACTTGTTCTTCAGTTCATGGATGTCAAAGGGCTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTATAGAAGCATGAAAGGCTACCCGATTAGAAGACAAGATAGGGTGCAAACAAGAAAACTACATTCGTTTGAAGAGGCCAAGGATGATGGGTGTGTTGAAGAAGGAAATGGTCTGAGCTTTTACCCATCTTCCAAACCACCAGAGAATCCGATTCCCAGGTCATCTGCAACCCCCGCCGTTCAAAAAGCAAGAACCGAGACGATGAGTTCAAACATATCAGAGAATTCGCAGCTGCAGCAGCAGATGCAATGCAGCCAAGGAGGAATATATGTGAGAGTCTCAAATCCGTACTCTTTTGATGATTATATGCTGGCATTGGGAATAAAGGAGGATCCTCACCCTTCAGCCTTCAAATTTGCTTTGCCAGAGTCTGAGTTCTTGAAGGTTACCACCAAACAAGAGGCGGGAAGAGCACATGCCAAAGACGATGACGAAGCCAGTGAATGTGAATTATCACTGTCCCTCTCGTTACACCATCCCCCCTCCCACAAGAGTAATGCTTCTTCAAGTGACTTAAGTGGTGCAATCTCATCGTCCTACTCTAGGTCTAACTACAAAGACTGCTCCGCCTCTTCTTCCGGGAATCGGAGCCTTAATCTGAATCTTTCGATTGCTCTCTGCAGTAACTGA

Protein Analysis

282

Amino Acids

31.19

Weight (kDa)

9.12

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 74 1.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 3 cut(s) 390, 620, 783
AclWI GGATC 3 cut(s) 48, 542, 555
AcsI RAATTY 2 cut(s) 439, 569
AcuI CTGAAG 3 cut(s) 89, 143, 543
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 4 cut(s) 117, 136, 759, 801
AflII CTTAAG 1 cut(s) 730
AgsI TTSAA 7 cut(s) 287, 314, 398, 426, 568, 598, 723
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 3 cut(s) 88, 333, 448
AluI AGCT 3 cut(s) 88, 333, 448
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 407, 499
AlwI GGATC 3 cut(s) 48, 542, 555
AlwNI CAGNNNCTG 2 cut(s) 587, 843
AoxI GGCC 3 cut(s) 108, 127, 291
ApeKI GCWGC 6 cut(s) 96, 445, 448, 451, 454, 468
ApoI RAATTY 2 cut(s) 439, 569
AspLEI GCGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 2 cut(s) 175, 545
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 703, 735
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 6 cut(s) 83, 435, 457, 463, 466, 480
BccI CCATC 6 cut(s) 69, 119, 213, 296, 349, 699
BceAI ACGGC 2 cut(s) 46, 377
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 407, 499
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 2 cut(s) 449, 835
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 730
BisI GCNGC 6 cut(s) 97, 446, 449, 452, 455, 469
BlsI GCNGC 6 cut(s) 98, 447, 450, 453, 456, 470
Bme1390I CCNGG 2 cut(s) 373, 796
BmiI GGNNCC 3 cut(s) 63, 549, 806
BmrFI CCNGG 2 cut(s) 373, 796
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 796
BsaJI CCNNGG 4 cut(s) 57, 294, 371, 472
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 136, 759, 801
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 4 cut(s) 57, 294, 371, 472
BseGI GGATG 3 cut(s) 175, 304, 691
BseLI CCNNNNNNNGG 4 cut(s) 117, 136, 759, 801
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 3 cut(s) 75, 320, 579
BseNI ACTGG 1 cut(s) 654
BseXI GCAGC 6 cut(s) 83, 435, 457, 463, 466, 480
BshFI GGCC 3 cut(s) 110, 129, 293
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 4 cut(s) 117, 136, 759, 801
BsmAI GTCTC 2 cut(s) 407, 499
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 3 cut(s) 110, 129, 293
Bsp1286I GDGCHC 2 cut(s) 183, 631
Bsp143I GATC 2 cut(s) 53, 547
BspACI CCGC 3 cut(s) 390, 620, 783
BspANI GGCC 3 cut(s) 110, 129, 293
BspCNI CTCAG 3 cut(s) 76, 321, 580
BspLI GGNNCC 3 cut(s) 63, 549, 806
BspMAI CTGCAG 2 cut(s) 453, 839
BspPI GGATC 3 cut(s) 48, 542, 555
BspQI GCTCTTC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 1 cut(s) 654
BssECI CCNNGG 4 cut(s) 57, 294, 371, 472
BssMI GATC 2 cut(s) 53, 547
BssT1I CCWWGG 3 cut(s) 57, 294, 472
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 3 cut(s) 282, 619, 793
BstAFI CTTAAG 1 cut(s) 730
BstAPI GCANNNNNTGC 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 3 cut(s) 84, 329, 588
BstEII GGTNACC 1 cut(s) 601
BstENI CCTNNNNNAGG 1 cut(s) 757
BstF5I GGATG 3 cut(s) 175, 304, 691
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 56, 550
BstMAI GTCTC 2 cut(s) 407, 499
BstMBI GATC 2 cut(s) 53, 547
BstMWI GCNNNNNNNGC 6 cut(s) 231, 389, 451, 454, 460, 626
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 371, 794
BstSFI CTRYAG 2 cut(s) 449, 835
BstV1I GCAGC 6 cut(s) 83, 435, 457, 463, 466, 480
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 53, 547
BstYI RGATCY 2 cut(s) 53, 547
BsuRI GGCC 3 cut(s) 110, 129, 293
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 3 cut(s) 175, 304, 691
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 661, 671
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 2 cut(s) 587, 843
CfoI GCGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 505
CviAII CATG 4 cut(s) 166, 194, 226, 632
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 3 cut(s) 84, 329, 588
DpnI GATC 2 cut(s) 55, 549
DpnII GATC 2 cut(s) 53, 547
Eam1104I CTCTTC 3 cut(s) 282, 619, 793
EarI CTCTTC 3 cut(s) 282, 619, 793
EciI GGCGGA 1 cut(s) 772
Eco130I CCWWGG 3 cut(s) 57, 294, 472
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 3 cut(s) 89, 143, 543
Eco91I GGTNACC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 757
EcoO65I GGTNACC 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 3 cut(s) 57, 294, 472
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 57, 294, 472
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 4 cut(s) 169, 197, 229, 635
FaqI GGGAC 1 cut(s) 661
FatI CATG 4 cut(s) 165, 193, 225, 631
FauI CCCGC 2 cut(s) 397, 613
Fnu4HI GCNGC 6 cut(s) 97, 446, 449, 452, 455, 469
FokI GGATG 3 cut(s) 182, 311, 678
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 6 cut(s) 97, 446, 449, 452, 455, 469
FspBI CTAG 1 cut(s) 759
GlaI GCGC 1 cut(s) 34
GluI GCNGC 6 cut(s) 97, 446, 449, 452, 455, 469
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 3 cut(s) 110, 129, 293
HapII CCGG 1 cut(s) 795
HhaI GCGC 1 cut(s) 35
Hin1II CATG 4 cut(s) 169, 197, 229, 635
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 7 cut(s) 79, 361, 367, 492, 584, 799, 817
HpaII CCGG 1 cut(s) 795
HphI GGTGA 2 cut(s) 175, 545
Hpy188I TCNGA 7 cut(s) 125, 330, 366, 436, 589, 804, 816
Hpy188III TCNNGA 3 cut(s) 83, 211, 595
HpyAV CCTTC 4 cut(s) 311, 567, 574, 592
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4V TGCA 9 cut(s) 18, 23, 262, 383, 451, 463, 468, 740, 837
HpyF10VI GCNNNNNNNGC 6 cut(s) 231, 389, 451, 454, 460, 626
HpyF3I CTNAG 3 cut(s) 84, 329, 588
Hsp92II CATG 4 cut(s) 169, 197, 229, 635
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 53, 547
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 2 cut(s) 785, 804
Lsp1109I GCAGC 6 cut(s) 83, 435, 457, 463, 466, 480
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 759
MaeIII GTNAC 4 cut(s) 601, 684, 725, 839
MalI GATC 2 cut(s) 55, 549
MboI GATC 2 cut(s) 53, 547
MflI RGATCY 2 cut(s) 53, 547
MhlI GDGCHC 2 cut(s) 183, 631
MluCI AATT 3 cut(s) 439, 569, 665
MlyI GAGTC 3 cut(s) 73, 501, 593
MseI TTAA 2 cut(s) 731, 810
MspA1I CMGCKG 1 cut(s) 448
MspCI CTTAAG 1 cut(s) 730
MspI CCGG 1 cut(s) 795
MspR9I CCNGG 2 cut(s) 373, 796
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 6 cut(s) 231, 389, 451, 454, 460, 626
NciI CCSGG 1 cut(s) 796
NdeII GATC 2 cut(s) 53, 547
NlaIII CATG 4 cut(s) 169, 197, 229, 635
NlaIV GGNNCC 3 cut(s) 63, 549, 806
NmuCI GTSAC 1 cut(s) 725
NspI RCATGY 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 619
PfeI GAWTC 4 cut(s) 361, 367, 799, 817
PfoI TCCNGGA 1 cut(s) 794
PkrI GCNGC 6 cut(s) 98, 447, 450, 453, 456, 470
PleI GAGTC 3 cut(s) 73, 500, 592
PpsI GAGTC 3 cut(s) 73, 500, 592
Psp6I CCWGG 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 601
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 63, 549, 806
PstI CTGCAG 2 cut(s) 453, 839
PstNI CAGNNNCTG 2 cut(s) 587, 843
PsuI RGATCY 2 cut(s) 53, 547
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 2 cut(s) 731, 810
SatI GCNGC 6 cut(s) 97, 446, 449, 452, 455, 469
Sau3AI GATC 2 cut(s) 53, 547
SchI GAGTC 3 cut(s) 73, 501, 593
ScrFI CCNGG 2 cut(s) 373, 796
SduI GDGCHC 2 cut(s) 183, 631
SetI ASST 7 cut(s) 63, 90, 335, 377, 450, 603, 764
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 2 cut(s) 449, 835
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
Sse9I AATT 3 cut(s) 439, 569, 665
SsiI CCGC 3 cut(s) 390, 620, 783
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 2 cut(s) 371, 794
StyI CCWWGG 3 cut(s) 57, 294, 472
TaaI ACNGT 1 cut(s) 675
TaqI TCGA 2 cut(s) 114, 824
TasI AATT 3 cut(s) 439, 569, 665
TfiI GAWTC 4 cut(s) 361, 367, 799, 817
Tru1I TTAA 2 cut(s) 731, 810
Tru9I TTAA 2 cut(s) 731, 810
TscAI CASTG 3 cut(s) 25, 661, 678
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 6 cut(s) 96, 445, 448, 451, 454, 468
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 3 cut(s) 80, 154, 242
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 3 cut(s) 25, 661, 678
Vha464I CTTAAG 1 cut(s) 730
XagI CCTNNNNNAGG 1 cut(s) 757
XapI RAATTY 2 cut(s) 439, 569
XceI RCATGY 1 cut(s) 635
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.