Rh4AG424800
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013661
Physical Location & Seq
Forward (+)
72118325 .. 72120982
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG424800.1

Sequence Viewer

Length: 921 bp
ATGAGTACTAGCAGTAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAAGTGCCTCGTCTCAGGTGGACTCCTGAGCTTCATCACTGCTTTGTTCAAGCCATTGAGAGGCTTGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGATTATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGACCTTAGTAGAGCACCTGCAGATGGGAGTTTCACGCAGCAAAGAAAGCAAAGTTTTGAAGAGCATAGTGATGGGTGTCTTGATCATGAAGTAAATGTTATGGGTTTGGTCTCGGCTTCAAAACTCATCCCGGAATCAGATCCTCAGGTCATCTATAGTGTTCCACGCCGGTCAAAACCCATCAGAGAATCAGATCCTCAGGCCATCTACACTAATCCCAGCAGTTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAGTCTCAGAGCAGCAGCAGCGGCAATGGAGCCAAACAACACATGAAACGGCACCGTACACTTTTAATGATTACGGCGGGGTGCTGGCAAATGGGGTGTCTCTGCCACAGCAGCATCATTTTCTTTACAACTTCAACCCCTTCTTCAAATCTGCATTGCAGGAATCTGATTTCTTCAAGATTGATGAAAAGCATGAACTGAAAATGCATAAACAGGAGAGTAGAGGAAGAGCACTCACCGAAGGTGGAGACTGTCAGTTATCGTTGTCTCTCTCGTTGCCTCATCCCTCTTCTCACATGAGCAATGCTTCTTCAAGTGAAGAGATGGGTGGTGCAATCTCATCATTAAAATATAAAGACTGTTCTGCCTTTTCTTCGGCAAGTCGTGGTGTTGATTTGAATCTTTCCATTGCTCTCTGTGGTAACTGA

Protein Analysis

306

Amino Acids

34.03

Weight (kDa)

8.92

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 544
AciI CCGC 2 cut(s) 514, 570
AclWI GGATC 3 cut(s) 48, 368, 422
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 2 cut(s) 7, 551
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 257
AgsI TTSAA 9 cut(s) 107, 293, 354, 462, 628, 640, 670, 807, 892
AluBI AGCT 4 cut(s) 18, 88, 470, 489
AluI AGCT 4 cut(s) 18, 88, 470, 489
Alw21I GWGCWC 2 cut(s) 250, 727
Alw26I GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
AlwI GGATC 3 cut(s) 48, 368, 422
AlwNI CAGNNNCTG 1 cut(s) 18
AoxI GGCC 3 cut(s) 41, 127, 435
ApeKI GCWGC 5 cut(s) 271, 505, 508, 511, 604
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 175, 245, 721
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 1 cut(s) 544
Bbv12I GWGCWC 2 cut(s) 250, 727
BbvI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BccI CCATC 6 cut(s) 213, 251, 299, 422, 446, 811
BceAI ACGGC 2 cut(s) 558, 583
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BfaI CTAG 2 cut(s) 9, 471
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
BlsI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 524, 546
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 349
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 257
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 4 cut(s) 524, 647, 802, 900
Bse8I GATNNNNATC 1 cut(s) 891
BseGI GGATG 3 cut(s) 175, 360, 775
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BseMI GCAATG 4 cut(s) 524, 647, 802, 900
BseMII CTCAG 5 cut(s) 75, 85, 392, 446, 513
BseXI GCAGC 5 cut(s) 283, 517, 520, 523, 616
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 3 cut(s) 43, 129, 437
BshNI GGYRCC 1 cut(s) 544
BsiHKAI GWGCWC 2 cut(s) 250, 727
BsiSI CCGG 2 cut(s) 365, 403
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BsmAI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BsmBI CGTCTC 2 cut(s) 74, 473
BsnI GGCC 3 cut(s) 43, 129, 437
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 250, 727
Bsp143I GATC 4 cut(s) 53, 316, 373, 427
BspACI CCGC 2 cut(s) 514, 570
BspANI GGCC 3 cut(s) 43, 129, 437
BspCNI CTCAG 5 cut(s) 76, 84, 391, 445, 512
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 524, 546
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 48, 368, 422
BspQI GCTCTTC 2 cut(s) 288, 715
BspT107I GGYRCC 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 4 cut(s) 524, 647, 802, 900
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssMI GATC 4 cut(s) 53, 316, 373, 427
Bst4CI ACNGT 3 cut(s) 549, 746, 854
Bst6I CTCTTC 4 cut(s) 288, 715, 787, 807
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 175, 360, 775
BstKTI GATC 4 cut(s) 56, 319, 376, 430
BstMAI GTCTC 7 cut(s) 74, 349, 473, 502, 597, 735, 765
BstMBI GATC 4 cut(s) 53, 316, 373, 427
BstMWI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 2 cut(s) 252, 388
BstV1I GCAGC 5 cut(s) 283, 517, 520, 523, 616
BstX2I RGATCY 3 cut(s) 53, 373, 427
BstYI RGATCY 3 cut(s) 53, 373, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 3 cut(s) 43, 129, 437
BtsCI GGATG 3 cut(s) 175, 360, 775
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 2 cut(s) 6, 550
CviAII CATG 6 cut(s) 194, 226, 320, 536, 686, 790
CviQI GTAC 2 cut(s) 6, 550
DdeI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
DpnI GATC 4 cut(s) 55, 318, 375, 429
DpnII GATC 4 cut(s) 53, 316, 373, 427
Eam1104I CTCTTC 4 cut(s) 288, 715, 787, 807
EarI CTCTTC 4 cut(s) 288, 715, 787, 807
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 702
Esp3I CGTCTC 2 cut(s) 74, 473
FaeI CATG 6 cut(s) 197, 229, 323, 539, 689, 793
FatI CATG 6 cut(s) 193, 225, 319, 535, 685, 789
FauI CCCGC 1 cut(s) 563
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FokI GGATG 3 cut(s) 182, 347, 762
Fsp4HI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
FspBI CTAG 2 cut(s) 9, 471
GluI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 43, 129, 437
HapII CCGG 2 cut(s) 365, 403
Hin1II CATG 6 cut(s) 197, 229, 323, 539, 689, 793
HinfI GANTC 7 cut(s) 79, 180, 368, 422, 474, 656, 892
HpaII CCGG 2 cut(s) 365, 403
HphI GGTGA 3 cut(s) 175, 245, 721
Hpy166II GTNNAC 2 cut(s) 78, 552
Hpy188I TCNGA 6 cut(s) 162, 373, 419, 427, 502, 661
Hpy188III TCNNGA 6 cut(s) 83, 211, 314, 320, 478, 670
Hpy8I GTNNAC 2 cut(s) 78, 552
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 643, 728
HpyCH4III ACNGT 3 cut(s) 549, 746, 854
HpyCH4V TGCA 5 cut(s) 254, 647, 652, 700, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
HpyF3I CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
Hsp92II CATG 6 cut(s) 197, 229, 323, 539, 689, 793
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 53, 316, 373, 427
LguI GCTCTTC 2 cut(s) 288, 715
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 5 cut(s) 283, 517, 520, 523, 616
LweI GCATC 1 cut(s) 616
MaeI CTAG 2 cut(s) 9, 471
MaeIII GTNAC 2 cut(s) 233, 914
MalI GATC 4 cut(s) 55, 318, 375, 429
MboI GATC 4 cut(s) 53, 316, 373, 427
MflI RGATCY 3 cut(s) 53, 373, 427
MhlI GDGCHC 2 cut(s) 250, 727
MlyI GAGTC 2 cut(s) 73, 174
MnlI CCTC 9 cut(s) 75, 111, 119, 222, 387, 441, 710, 783, 790
Mph1103I ATGCAT 1 cut(s) 702
MseI TTAA 2 cut(s) 558, 839
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 2 cut(s) 365, 403
MspR9I CCNGG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 280, 511, 514, 604
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 53, 316, 373, 427
NlaIII CATG 6 cut(s) 197, 229, 323, 539, 689, 793
NlaIV GGNNCC 2 cut(s) 524, 546
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 702
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 288, 715
PfeI GAWTC 5 cut(s) 368, 422, 474, 656, 892
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 6 cut(s) 273, 507, 510, 513, 516, 606
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 524, 546
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 53, 373, 427
RsaI GTAC 2 cut(s) 7, 551
RsaNI GTAC 2 cut(s) 6, 550
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 2 cut(s) 288, 715
SaqAI TTAA 2 cut(s) 558, 839
SatI GCNGC 6 cut(s) 272, 506, 509, 512, 515, 605
Sau3AI GATC 4 cut(s) 53, 316, 373, 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 2 cut(s) 250, 727
SetI ASST 9 cut(s) 20, 77, 90, 240, 253, 384, 472, 491, 739
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 2 cut(s) 252, 388
SmiMI CAYNNNNRTG 1 cut(s) 303
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 514, 570
SspMI CTAG 2 cut(s) 9, 471
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 549, 746, 854
TaqI TCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 5 cut(s) 368, 422, 474, 656, 892
Tru1I TTAA 2 cut(s) 558, 839
Tru9I TTAA 2 cut(s) 558, 839
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 271, 505, 508, 511, 604
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 80, 336, 552, 693, 702
TspRI CASTG 1 cut(s) 101
XspI CTAG 2 cut(s) 9, 471
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.