Rorug04G0363000
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013661
Physical Location & Seq
Reverse (-)
53543481 .. 53545591
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0363000.1

Sequence Viewer

Length: 1161 bp
ATGAATGAGGAGAATTGGGAAGGAGCTCAAAAAATGAGATTGAATAAGAGGATCAGCACACTTCGACAAAAGATAAAGGCATTGGAGGATGAGAAATTTGAACAATATGAGGATGAAAGTGATAATCATACTGAGGTGCAGCAGCATGCAAAAGAATCAGATGACCAAGAGCAACTACAGGCTGGAGCAGGTGGAAAACAGAAGGATGATAATCCTACTGAGGGGCAGCAGCTACAAATGGTAATTTACCAAGAGCAAGACCAAGGAAATTTGAACACTGATGCACAGACCGAAATGGATGAGGCAACTTCAGTGATTATTGAATGCCTTGAAGACTTGAAGAAAGGGGAAGAGAAAGGAAAGAAAGCAGAAAATCCAGTGATAATGAAACTGAGAGGGGAGAATAGAAAGGACACAAAGGACTCCAGCAAATACATTGAACAATTTTGGGATGGAGGACAGTTTGGGAGTGTCTCAAAGCCTGATGTGAAAGCTCTGCTTGAAGGATCGTCAATAAATTCCAATGTGGTCAATGCTTACATAGACATAATCAAAGGCGATTTAGAGAAATCGGGCATTAGAAACCAAGGAATCATGACGACATATGTGTTGGATTCAGTGAGAGATACATCACCAAGATTGAAGTATAATAATGTCTTTGAACCCATGATGACTCTCTTAGGACACTGCGACAACATATTCATCCCATTGATCACAACTGAAGACTACCACTCCACAATGCTTAGGTTGAACAAGAAGGCAAAAGAATGGATTCATTACAATCCAATGCGCAAAAGAACAAATCCTGAAAAAGGCAAAGGCTACGAGAATGCCAAAGAAGTGATTGATGAAAATGCAGAGAAAACAATCGCTTGGATAAACAAAATTGATGTGGATAACTTAAAGCTGGTTGAAGACCTGTATTGTGGACAGCAACCTGATAATTCGTTGGACTGCGGACCTTATATCCTACACTATATAGAGAATATAGCAAAGAACAGGTTGCAGATAAGCAAAGCAGATAGAGGCGTTTTGGTTGACAAGGTTTTGGGATTAGAAAGAGAAATCAAAGAAAGCTTGAAGAACATGAGAAGAACCATGGTGGAGAGGTTTCTTAACCATGACGAGGGCTGGTATTCGAAAGTAGGTTACACTCAGTAA

Protein Analysis

386

Amino Acids

44.45

Weight (kDa)

5.19

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 225 - 338 3.5e-08 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 179
Acc16I TGCGCA 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 1 cut(s) 957
AclWI GGATC 2 cut(s) 59, 514
AcsI RAATTY 3 cut(s) 95, 268, 517
AcuI CTGAAG 2 cut(s) 294, 741
AfiI CCNNNNNNNGG 3 cut(s) 221, 812, 1126
AluBI AGCT 5 cut(s) 26, 232, 494, 907, 1077
AluI AGCT 5 cut(s) 26, 232, 494, 907, 1077
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 478
AlwI GGATC 2 cut(s) 59, 514
ApeKI GCWGC 4 cut(s) 139, 142, 226, 229
ApoI RAATTY 3 cut(s) 95, 268, 517
Asp700I GAANNNNTTC 1 cut(s) 771
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 624
AsuII TTCGAA 1 cut(s) 1139
AvaII GGWCC 1 cut(s) 959
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 3 cut(s) 339, 729, 921
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 4 cut(s) 151, 154, 238, 241
BccI CCATC 1 cut(s) 446
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 140, 143, 227, 230
BlsI GCNGC 4 cut(s) 141, 144, 228, 231
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 959
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 3 cut(s) 339, 729, 921
BpmI CTGGAG 2 cut(s) 204, 409
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 1139
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 262, 586, 1098
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 812, 1126
Bse1I ACTGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 262, 586, 1098
BseGI GGATG 6 cut(s) 94, 118, 211, 304, 457, 702
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 221, 812, 1126
BseMII CTCAG 3 cut(s) 123, 210, 383
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 151, 154, 238, 241
BsgI GTGCAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 221, 812, 1126
BsmAI GTCTC 1 cut(s) 478
BsmI GAATGC 2 cut(s) 329, 835
Bsp119I TTCGAA 1 cut(s) 1139
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 51, 506, 711
Bsp19I CCATGG 1 cut(s) 1098
BspACI CCGC 1 cut(s) 957
BspCNI CTCAG 3 cut(s) 124, 211, 384
BspHI TCATGA 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 59, 514
BspT104I TTCGAA 1 cut(s) 1139
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 262, 586, 1098
BssMI GATC 3 cut(s) 51, 506, 711
BssT1I CCWWGG 3 cut(s) 262, 586, 1098
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 1139
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 6 cut(s) 132, 219, 392, 679, 743, 1155
BstDSI CCRYGG 1 cut(s) 1098
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 6 cut(s) 94, 118, 211, 304, 457, 702
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 3 cut(s) 54, 509, 714
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 3 cut(s) 51, 506, 711
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 4 cut(s) 151, 154, 238, 241
BstV2I GAAGAC 3 cut(s) 339, 729, 921
BtgI CCRYGG 1 cut(s) 1098
BtsCI GGATG 6 cut(s) 94, 118, 211, 304, 457, 702
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 5 cut(s) 276, 318, 384, 624, 685
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 792
Cfr13I GGNCC 1 cut(s) 959
CviAII CATG 6 cut(s) 146, 595, 667, 1087, 1099, 1121
CviJI RGCY 9 cut(s) 26, 182, 232, 481, 494, 822, 907, 1077, 1131
CviKI_1 RGCY 9 cut(s) 26, 182, 232, 481, 494, 822, 907, 1077, 1131
DdeI CTNAG 6 cut(s) 132, 219, 392, 679, 743, 1155
DpnI GATC 3 cut(s) 53, 508, 713
DpnII GATC 3 cut(s) 51, 506, 711
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 3 cut(s) 262, 586, 1098
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 294, 741
EcoICRI GAGCTC 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoT14I CCWWGG 3 cut(s) 262, 586, 1098
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 3 cut(s) 262, 586, 1098
FaeI CATG 6 cut(s) 149, 598, 670, 1090, 1102, 1124
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 6 cut(s) 145, 594, 666, 1086, 1098, 1120
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 4 cut(s) 140, 143, 227, 230
FokI GGATG 6 cut(s) 101, 125, 218, 311, 464, 689
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 4 cut(s) 140, 143, 227, 230
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 1 cut(s) 791
GluI GCNGC 4 cut(s) 140, 143, 227, 230
GsuI CTGGAG 2 cut(s) 204, 409
HhaI GCGC 1 cut(s) 792
Hin1II CATG 6 cut(s) 149, 598, 670, 1090, 1102, 1124
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 6 cut(s) 155, 422, 591, 614, 673, 772
HphI GGTGA 1 cut(s) 624
Hpy166II GTNNAC 2 cut(s) 929, 1039
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 595, 806
Hpy8I GTNNAC 2 cut(s) 929, 1039
HpyAV CCTTC 4 cut(s) 14, 196, 497, 751
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4V TGCA 5 cut(s) 139, 149, 284, 857, 1006
HpyF3I CTNAG 6 cut(s) 132, 219, 392, 679, 743, 1155
Hsp92II CATG 6 cut(s) 149, 598, 670, 1090, 1102, 1124
HspAI GCGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 3 cut(s) 51, 506, 711
LmnI GCTCC 2 cut(s) 23, 185
Lsp1109I GCAGC 4 cut(s) 151, 154, 238, 241
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 1148
MalI GATC 3 cut(s) 53, 508, 713
MboI GATC 3 cut(s) 51, 506, 711
MboII GAAGA 7 cut(s) 344, 352, 362, 734, 926, 1093, 1104
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 8 cut(s) 13, 95, 243, 268, 443, 517, 885, 943
MlyI GAGTC 2 cut(s) 416, 667
MmeI TCCRAC 2 cut(s) 591, 930
MroXI GAANNNNTTC 1 cut(s) 771
MseI TTAA 2 cut(s) 902, 1116
Mva1269I GAATGC 2 cut(s) 329, 835
NcoI CCATGG 1 cut(s) 1098
NdeI CATATG 1 cut(s) 604
NdeII GATC 3 cut(s) 51, 506, 711
NlaIII CATG 6 cut(s) 149, 598, 670, 1090, 1102, 1124
NsbI TGCGCA 1 cut(s) 791
NspI RCATGY 1 cut(s) 149
NspV TTCGAA 1 cut(s) 1139
PaeI GCATGC 1 cut(s) 149
PagI TCATGA 1 cut(s) 594
PaqCI CACCTGC 1 cut(s) 179
PctI GAATGC 2 cut(s) 329, 835
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 4 cut(s) 155, 591, 614, 772
PkrI GCNGC 4 cut(s) 141, 144, 228, 231
PleI GAGTC 2 cut(s) 416, 667
PpsI GAGTC 2 cut(s) 416, 667
Psp124BI GAGCTC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 959
SacI GAGCTC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 902, 1116
SatI GCNGC 4 cut(s) 140, 143, 227, 230
Sau3AI GATC 3 cut(s) 51, 506, 711
Sau96I GGNCC 1 cut(s) 959
SchI GAGTC 2 cut(s) 416, 667
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 176
SfuI TTCGAA 1 cut(s) 1139
SinI GGWCC 1 cut(s) 959
SphI GCATGC 1 cut(s) 149
Sse9I AATT 8 cut(s) 13, 95, 243, 268, 443, 517, 885, 943
SsiI CCGC 1 cut(s) 957
SstI GAGCTC 1 cut(s) 28
StyI CCWWGG 3 cut(s) 262, 586, 1098
TaaI ACNGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 64, 1139
TaqII GACCGA 1 cut(s) 305
TasI AATT 8 cut(s) 13, 95, 243, 268, 443, 517, 885, 943
TfiI GAWTC 4 cut(s) 155, 591, 614, 772
Tru1I TTAA 2 cut(s) 902, 1116
Tru9I TTAA 2 cut(s) 902, 1116
TscAI CASTG 5 cut(s) 283, 318, 384, 624, 692
TseI GCWGC 4 cut(s) 139, 142, 226, 229
TspDTI ATGAA 6 cut(s) 17, 129, 401, 691, 764, 864
TspRI CASTG 5 cut(s) 283, 318, 384, 624, 692
VpaK11BI GGWCC 1 cut(s) 959
XagI CCTNNNNNAGG 1 cut(s) 810
XapI RAATTY 3 cut(s) 95, 268, 517
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.