FvH4_4g36440

Chromosome segregation in meiosis protein 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
33386061 .. 33388838
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36440.t2

Sequence Viewer

Length: 1083 bp
ATGGAGAAGGCAGCAGCGACGGGGTGCTACAAGTGTGGCCGACCTGGCCACTGGTCACGTGACTGCCCTTCCTCTACTCAAACCCCCAATTCGAACCCCGATTCCGATCCAAACCCTAACCCTAGGCCGCCCAATCCCAATTCCTCATCTTATCCTTTCAAGAACACTACCGGCACCGCTTCCGAAGGGAAAAAGGTCTCCGCTCCGAAGACTCGTCCGAAGCTGACCCCGGAGGTGCTTCTCTCCGACGACGGCGGCCTCGGGTACATCCTCCGCCACTTCCCTAAGTCCTTCAAGTACCGCGGTCGCGGACACGAGGTTAAGGATTTGGGGAACCTGATTGGGTTGTACAGGGAGTGGCACTCTCGTCTGCTGCCGTATTACTCGTTTGATCAGTTTGTGCATAAGGTGGAACAAGTGGCGGCCACGAGACGAGTCAAGATGTCTCTTAGAGAATTGAGAGAAAGAGTGGCCAGCGGAGGAGACCTGACGAAGGTGCATGAACCTCCGGTTATTGACGAGGACATTCCAAAGGATGAACACGAAACTTTAAACCCTGAGGAACCATCTGATCACCAGGGAGATCCATATGCAGGGAACCAAGATGATGATTTTATGCAGGAAGATATGCTCAACGAAATTTATGAGAAAGCCACTGAAGAACCACTGTTGCATTGTGATATGGTCACTGCTAGCGTATCTGCACCAGATAGATTTCAGAAAGATTTAACAACACAGTTGCCAAATACAAATAAAGATATTGGTGAATCCAGTGAAAATCAGATTACAGATGAACAAAAAGCCAGAATGGAAGCTAACAGATTGAAGGCACTTGAGAAAGCTGCAGCTAGGCGCCGCCAATTGCAGGAACCACCATTGCAGTGCGATATGGTCACTGCTAGCATATCTGCACCAGATAGTTTTCAGAAAGATTCAGCGACACAGTTGCCAAATACAAATAATGAAGTTCGTGAATCCAGTGAAAATCAGATTACAGATGAACAGAAAGCCAGAATGGAAGCTAACAGATTGAAGGCGGTTGAGAAAGCTGCAGCTAGGCGCCGCCAATTGCAGGTGGCCTGA
Functional Annotation

Protein Analysis

361

Amino Acids

40.48

Weight (kDa)

5.82

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 8 - 24 4.5e-08 Zinc knuckle
Swi3 PF07962 74 - 156 1.8e-24 Replication Fork Protection Component Swi3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010919)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1063
Acc36I ACCTGC 1 cut(s) 1063
AccB1I GGYRCC 3 cut(s) 173, 852, 1059
AccBSI CCGCTC 1 cut(s) 203
AccII CGCG 2 cut(s) 303, 309
AclWI GGATC 2 cut(s) 101, 578
AcoI YGGCCR 4 cut(s) 37, 46, 423, 471
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 678
AcvI CACGTG 1 cut(s) 59
AcyI GRCGYC 2 cut(s) 853, 1060
AfaI GTAC 3 cut(s) 266, 299, 350
AfiI CCNNNNNNNGG 4 cut(s) 493, 593, 865, 1072
AgsI TTSAA 4 cut(s) 160, 295, 826, 1033
AjnI CCWGG 2 cut(s) 43, 576
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 7 cut(s) 223, 815, 842, 848, 1022, 1049, 1055
AluI AGCT 7 cut(s) 223, 815, 842, 848, 1022, 1049, 1055
Alw26I GTCTC 4 cut(s) 202, 424, 450, 477
AlwI GGATC 2 cut(s) 101, 578
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 7 cut(s) 37, 46, 125, 256, 423, 471, 1077
ApeKI GCWGC 7 cut(s) 11, 14, 373, 842, 845, 1049, 1052
ApoI RAATTY 1 cut(s) 639
AspA2I CCTAGG 1 cut(s) 122
AspLEI GCGC 2 cut(s) 855, 1062
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 566, 776
AsuII TTCGAA 1 cut(s) 92
AsuNHI GCTAGC 2 cut(s) 692, 899
AvaI CYCGRG 1 cut(s) 260
AvrII CCTAGG 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 558
BalI TGGCCA 2 cut(s) 48, 473
BanI GGYRCC 3 cut(s) 173, 852, 1059
BauI CACGAG 2 cut(s) 314, 427
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 7 cut(s) 23, 26, 360, 829, 857, 1036, 1064
BccI CCATC 1 cut(s) 574
BceAI ACGGC 2 cut(s) 268, 361
BcgI CGANNNNNNTGC 2 cut(s) 928, 962
BciT130I CCWGG 2 cut(s) 45, 578
BclI TGATCA 2 cut(s) 391, 571
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 4 cut(s) 202, 424, 450, 477
BfaI CTAG 5 cut(s) 123, 693, 849, 900, 1056
BfmI CTRYAG 2 cut(s) 843, 1050
BfoI RGCGCY 2 cut(s) 856, 1063
BfuAI ACCTGC 1 cut(s) 1063
BglI GCCNNNNNGGC 1 cut(s) 45
BlnI CCTAGG 1 cut(s) 122
Bme1390I CCNGG 3 cut(s) 45, 230, 578
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 7 cut(s) 175, 335, 564, 599, 854, 870, 1061
BmrFI CCNGG 3 cut(s) 45, 230, 578
BmtI GCTAGC 2 cut(s) 696, 903
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 853, 1060
BsaI GGTCTC 2 cut(s) 202, 477
BsaJI CCNNGG 5 cut(s) 122, 228, 259, 301, 577
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 593, 865, 1072
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 56, 771, 978
Bse21I CCTNAGG 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 875
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 45, 578
BseDI CCNNGG 5 cut(s) 122, 228, 259, 301, 577
BseGI GGATG 2 cut(s) 267, 541
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 493, 593, 865, 1072
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 56, 771, 978
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 7 cut(s) 23, 26, 360, 829, 857, 1036, 1064
BsgI GTGCAG 2 cut(s) 687, 894
Bsh1236I CGCG 2 cut(s) 303, 309
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 7 cut(s) 39, 48, 127, 258, 425, 473, 1079
BshNI GGYRCC 3 cut(s) 173, 852, 1059
BsiEI CGRYCG 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 3 cut(s) 171, 230, 509
BslI CCNNNNNNNGG 4 cut(s) 493, 593, 865, 1072
BsmAI GTCTC 4 cut(s) 202, 424, 450, 477
BsmBI CGTCTC 1 cut(s) 424
BsnI GGCC 7 cut(s) 39, 48, 127, 258, 425, 473, 1079
Bso31I GGTCTC 2 cut(s) 202, 477
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 4 cut(s) 106, 391, 571, 583
BspANI GGCC 7 cut(s) 39, 48, 127, 258, 425, 473, 1079
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 2 cut(s) 303, 309
BspLI GGNNCC 7 cut(s) 175, 335, 564, 599, 854, 870, 1061
BspMAI CTGCAG 2 cut(s) 847, 1054
BspMI ACCTGC 1 cut(s) 1063
BspOI GCTAGC 2 cut(s) 696, 903
BspPI GGATC 2 cut(s) 101, 578
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 3 cut(s) 173, 852, 1059
BspTNI GGTCTC 2 cut(s) 202, 477
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 875
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 56, 771, 978
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 5 cut(s) 122, 228, 259, 301, 577
BssMI GATC 4 cut(s) 106, 391, 571, 583
BssNI GRCGYC 2 cut(s) 853, 1060
BssSI CACGAG 2 cut(s) 314, 427
BssT1I CCWWGG 1 cut(s) 122
Bst2BI CACGAG 2 cut(s) 314, 427
Bst2UI CCWGG 2 cut(s) 45, 578
Bst4CI ACNGT 3 cut(s) 669, 738, 945
BstACI GRCGYC 2 cut(s) 853, 1060
BstAUI TGTACA 1 cut(s) 348
BstBAI YACGTR 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 475, 694, 901
BstDEI CTNAG 3 cut(s) 285, 449, 558
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 267, 541
BstFNI CGCG 2 cut(s) 303, 309
BstH2I RGCGCY 2 cut(s) 856, 1063
BstHHI GCGC 2 cut(s) 855, 1062
BstKTI GATC 4 cut(s) 109, 394, 574, 586
BstMAI GTCTC 4 cut(s) 202, 424, 450, 477
BstMBI GATC 4 cut(s) 106, 391, 571, 583
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 2 cut(s) 45, 578
BstSCI CCNGG 3 cut(s) 43, 228, 576
BstSFI CTRYAG 2 cut(s) 843, 1050
BstUI CGCG 2 cut(s) 303, 309
BstV1I GCAGC 7 cut(s) 23, 26, 360, 829, 857, 1036, 1064
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 7 cut(s) 39, 48, 127, 258, 425, 473, 1079
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 2 cut(s) 267, 541
BtsI GCAGTG 3 cut(s) 687, 887, 894
BtsIMutI CAGTG 8 cut(s) 49, 654, 665, 687, 778, 887, 894, 985
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 3 cut(s) 475, 694, 901
CfoI GCGC 2 cut(s) 855, 1062
Cfr10I RCCGGY 1 cut(s) 170
Cfr42I CCGCGG 1 cut(s) 304
Csp6I GTAC 3 cut(s) 265, 298, 349
CviAII CATG 1 cut(s) 500
CviQI GTAC 3 cut(s) 265, 298, 349
DdeI CTNAG 3 cut(s) 285, 449, 558
DinI GGCGCC 2 cut(s) 854, 1061
DpnI GATC 4 cut(s) 108, 393, 573, 585
DpnII GATC 4 cut(s) 106, 391, 571, 583
DraI TTTAAA 1 cut(s) 552
EaeI YGGCCR 4 cut(s) 37, 46, 423, 471
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 2 cut(s) 202, 477
Eco57I CTGAAG 1 cut(s) 678
Eco72I CACGTG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 43, 576
EcoT14I CCWWGG 1 cut(s) 122
EgeI GGCGCC 2 cut(s) 854, 1061
EheI GGCGCC 2 cut(s) 854, 1061
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 1 cut(s) 503
FatI CATG 1 cut(s) 499
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 2 cut(s) 391, 571
FokI GGATG 2 cut(s) 254, 548
FspBI CTAG 5 cut(s) 123, 693, 849, 900, 1056
GlaI GCGC 2 cut(s) 854, 1061
HaeII RGCGCY 2 cut(s) 856, 1063
HaeIII GGCC 7 cut(s) 39, 48, 127, 258, 425, 473, 1079
HapII CCGG 3 cut(s) 171, 230, 509
HhaI GCGC 2 cut(s) 855, 1062
Hin1I GRCGYC 2 cut(s) 853, 1060
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 2 cut(s) 853, 1060
HinP1I GCGC 2 cut(s) 853, 1060
HinfI GANTC 6 cut(s) 101, 211, 435, 767, 932, 974
HpaII CCGG 3 cut(s) 171, 230, 509
HphI GGTGA 2 cut(s) 566, 776
Hpy188III TCNNGA 3 cut(s) 160, 439, 971
Hpy99I CGWCG 3 cut(s) 22, 251, 254
HpyAV CCTTC 6 cut(s) 78, 179, 301, 487, 820, 1027
HpyCH4III ACNGT 3 cut(s) 669, 738, 945
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 3 cut(s) 285, 449, 558
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 2 cut(s) 853, 1060
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 2 cut(s) 853, 1060
KasI GGCGCC 2 cut(s) 852, 1059
Ksp22I TGATCA 2 cut(s) 391, 571
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 4 cut(s) 106, 391, 571, 583
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 7 cut(s) 23, 26, 360, 829, 857, 1036, 1064
MaeI CTAG 5 cut(s) 123, 693, 849, 900, 1056
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 4 cut(s) 54, 59, 685, 892
MalI GATC 4 cut(s) 108, 393, 573, 585
MbiI CCGCTC 1 cut(s) 203
MboI GATC 4 cut(s) 106, 391, 571, 583
MboII GAAGA 3 cut(s) 220, 635, 671
MfeI CAATTG 2 cut(s) 860, 1067
MflI RGATCY 1 cut(s) 583
MlsI TGGCCA 2 cut(s) 48, 473
MluCI AATT 6 cut(s) 88, 139, 455, 639, 860, 1067
MluNI TGGCCA 2 cut(s) 48, 473
Mly113I GGCGCC 2 cut(s) 853, 1060
MlyI GAGTC 2 cut(s) 205, 444
MmeI TCCRAC 1 cut(s) 270
Mox20I TGGCCA 2 cut(s) 48, 473
MscI TGGCCA 2 cut(s) 48, 473
MseI TTAA 3 cut(s) 321, 551, 728
MslI CAYNNNNRTG 1 cut(s) 880
Msp20I TGGCCA 2 cut(s) 48, 473
MspA1I CMGCKG 2 cut(s) 303, 477
MspI CCGG 3 cut(s) 171, 230, 509
MspR9I CCNGG 3 cut(s) 45, 230, 578
MunI CAATTG 2 cut(s) 860, 1067
MvaI CCWGG 2 cut(s) 45, 578
MvnI CGCG 2 cut(s) 303, 309
MwoI GCNNNNNNNGC 1 cut(s) 45
NarI GGCGCC 2 cut(s) 853, 1060
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 589
NdeII GATC 4 cut(s) 106, 391, 571, 583
NheI GCTAGC 2 cut(s) 692, 899
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 7 cut(s) 175, 335, 564, 599, 854, 870, 1061
NmuCI GTSAC 4 cut(s) 54, 59, 685, 892
NspV TTCGAA 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 1063
PfeI GAWTC 4 cut(s) 101, 767, 932, 974
PleI GAGTC 2 cut(s) 205, 443
PluTI GGCGCC 2 cut(s) 856, 1063
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 205, 443
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 43, 576
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 2 cut(s) 43, 576
PspN4I GGNNCC 7 cut(s) 175, 335, 564, 599, 854, 870, 1061
PstI CTGCAG 2 cut(s) 847, 1054
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 266, 299, 350
RsaNI GTAC 3 cut(s) 265, 298, 349
RseI CAYNNNNRTG 1 cut(s) 880
SacII CCGCGG 1 cut(s) 304
SaqAI TTAA 3 cut(s) 321, 551, 728
Sau3AI GATC 4 cut(s) 106, 391, 571, 583
SchI GAGTC 2 cut(s) 205, 444
ScrFI CCNGG 3 cut(s) 45, 230, 578
SfcI CTRYAG 2 cut(s) 843, 1050
SfiI GGCCNNNNNGGCC 1 cut(s) 45
SfoI GGCGCC 2 cut(s) 854, 1061
Sfr303I CCGCGG 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 92
SgrBI CCGCGG 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 6 cut(s) 88, 139, 455, 639, 860, 1067
SspDI GGCGCC 2 cut(s) 852, 1059
SspMI CTAG 5 cut(s) 123, 693, 849, 900, 1056
StyD4I CCNGG 3 cut(s) 43, 228, 576
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 669, 738, 945
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 92
TasI AATT 6 cut(s) 88, 139, 455, 639, 860, 1067
TatI WGTACW 1 cut(s) 348
TauI GCSGC 5 cut(s) 130, 258, 425, 858, 1065
TfiI GAWTC 4 cut(s) 101, 767, 932, 974
Tru1I TTAA 3 cut(s) 321, 551, 728
Tru9I TTAA 3 cut(s) 321, 551, 728
TscAI CASTG 8 cut(s) 56, 661, 672, 694, 778, 887, 901, 985
TseFI GTSAC 4 cut(s) 54, 59, 685, 892
TseI GCWGC 7 cut(s) 11, 14, 373, 842, 845, 1049, 1052
Tsp45I GTSAC 4 cut(s) 54, 59, 685, 892
TspDTI ATGAA 5 cut(s) 516, 552, 807, 978, 1014
TspRI CASTG 8 cut(s) 56, 661, 672, 694, 778, 887, 901, 985
XagI CCTNNNNNAGG 1 cut(s) 491
XapI RAATTY 1 cut(s) 639
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 5 cut(s) 123, 693, 849, 900, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.