Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010919

Physical Location & Seq

Genomic Coordinates Forward (+)

72585896 .. 72587308

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG430400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCTCTCAGAGAATTGAGAGAAAGAGTGGCCAGTGGAGGAGACCTAACAAAGTTGCATGAACCGCCAGTTATTGAAGAAGACATTCCAAATGATGAACACGAAACTTTAAACCCTGAGAGACCATCTGATCACCAGAAAGATCCATCTTCAGGGAACCATGATGATGATTTTATGCAGGAAGATATGCTTAACGAAATTTACGAGAAAGCCACTGAAGAACCACCATTGCAGTGTGATATGGTCACTGCTAGCATATCTGCACCAGATAGTTTTCAGAAAGATTTAACAACACAGTTGCCAAATACAAATAATGAAGTTGGTGATTCCAGTGAAAATCAGATGACAGATGAACAGAGAGCCAGAATGGAAGCTAGCAGATTGAAGGCACTTGAGAAAGCTGCAGCTAGGCGCCGCCAATTGCAGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Swi3 zf-CCHC

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

4.51

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02820 AT3G02820
fragaria_vesca	FvH4_4g36440 FvH4_4g36440
malus_domestica	MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica	Prupe.1G343500_v2.0.a1
pyrus_communis	pycom13g00780 pycom16g00680
rosa_chinensis	RchiOBHm_Chr4g0446201
rosa_laevigata	RLG00000005683
rosa_multiflora	Rmu_sc0002266.1_g000014
rosa_roxburghii	Rroxscaffold_5G00386600
rosa_rugosa	Rorug04G0368400
rosa_samantha	Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana	Rw4G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	411
AciI	CCGC	2 cut(s)	65, 415
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	135, 237
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	152, 424
AgsI	TTSAA	2 cut(s)	77, 385
AluBI	AGCT	3 cut(s)	374, 401, 407
AluI	AGCT	3 cut(s)	374, 401, 407
Alw26I	GTCTC	3 cut(s)	9, 36, 115
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	30, 429
ApeKI	GCWGC	2 cut(s)	401, 404
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	125, 335
AsuNHI	GCTAGC	2 cut(s)	251, 374
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	388, 416
BccI	CCATC	2 cut(s)	133, 154
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	9, 36, 115
BfaI	CTAG	3 cut(s)	252, 375, 408
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	3 cut(s)	402, 405, 415
BlsI	GCNGC	3 cut(s)	403, 406, 416
BmiI	GGNNCC	2 cut(s)	158, 413
BmtI	GCTAGC	2 cut(s)	255, 378
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	2 cut(s)	36, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 424
Bse1I	ACTGG	3 cut(s)	33, 68, 330
Bse3DI	GCAATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	152, 424
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	22, 108
BseNI	ACTGG	3 cut(s)	33, 68, 330
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	388, 416
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	32, 431
BshNI	GGYRCC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	152, 424
BsmAI	GTCTC	3 cut(s)	9, 36, 115
BsnI	GGCC	2 cut(s)	32, 431
Bso31I	GGTCTC	2 cut(s)	36, 115
Bsp143I	GATC	2 cut(s)	130, 142
BspACI	CCGC	2 cut(s)	65, 415
BspANI	GGCC	2 cut(s)	32, 431
BspCNI	CTCAG	2 cut(s)	21, 109
BspLI	GGNNCC	2 cut(s)	158, 413
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	415
BspOI	GCTAGC	2 cut(s)	255, 378
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	2 cut(s)	36, 115
BsrDI	GCAATG	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	33, 68, 330
BssMI	GATC	2 cut(s)	130, 142
BssNI	GRCGYC	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	253, 376
BstDEI	CTNAG	2 cut(s)	8, 117
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	2 cut(s)	133, 145
BstMAI	GTCTC	3 cut(s)	9, 36, 115
BstMBI	GATC	2 cut(s)	130, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	388, 416
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	32, 431
BtsI	GCAGTG	2 cut(s)	239, 246
BtsIMutI	CAGTG	5 cut(s)	40, 213, 239, 246, 337
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	253, 376
CfoI	GCGC	1 cut(s)	414
CviAII	CATG	2 cut(s)	59, 161
CviJI	RGCY	7 cut(s)	32, 212, 362, 374, 401, 407, 431
CviKI_1	RGCY	7 cut(s)	32, 212, 362, 374, 401, 407, 431
DdeI	CTNAG	2 cut(s)	8, 117
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	2 cut(s)	132, 144
DpnII	GATC	2 cut(s)	130, 142
DraI	TTTAAA	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	36, 115
Eco57I	CTGAAG	2 cut(s)	135, 237
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	2 cut(s)	62, 164
FaiI	YATR	6 cut(s)	60, 162, 176, 188, 242, 257
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	2 cut(s)	58, 160
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	402, 405, 415
Fsp4HI	GCNGC	3 cut(s)	402, 405, 415
FspBI	CTAG	3 cut(s)	252, 375, 408
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	3 cut(s)	402, 405, 415
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	32, 431
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	62, 164
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	2 cut(s)	125, 335
Hpy188I	TCNGA	4 cut(s)	11, 130, 279, 342
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	6 cut(s)	58, 178, 232, 263, 404, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	8, 117
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	62, 164
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 142
Lsp1109I	GCAGC	2 cut(s)	388, 416
MaeI	CTAG	3 cut(s)	252, 375, 408
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	132, 144
MboI	GATC	2 cut(s)	130, 142
MboII	GAAGA	5 cut(s)	89, 92, 141, 194, 230
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	3 cut(s)	14, 198, 419
MluNI	TGGCCA	1 cut(s)	32
Mly113I	GGCGCC	1 cut(s)	412
MnlI	CCTC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	110, 192, 287
MslI	CAYNNNNRTG	2 cut(s)	165, 232
Msp20I	TGGCCA	1 cut(s)	32
MunI	CAATTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	2 cut(s)	130, 142
NheI	GCTAGC	2 cut(s)	251, 374
NlaIII	CATG	2 cut(s)	62, 164
NlaIV	GGNNCC	2 cut(s)	158, 413
NmuCI	GTSAC	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	403, 406, 416
PluTI	GGCGCC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	158, 413
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	165, 232
SaqAI	TTAA	3 cut(s)	110, 192, 287
SatI	GCNGC	3 cut(s)	402, 405, 415
Sau3AI	GATC	2 cut(s)	130, 142
SetI	ASST	5 cut(s)	48, 376, 403, 409, 429
SfcI	CTRYAG	1 cut(s)	402
SfoI	GGCGCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	165, 232
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	14, 198, 419
SsiI	CCGC	2 cut(s)	65, 415
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	3 cut(s)	252, 375, 408
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	3 cut(s)	14, 198, 419
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	110, 192, 287
Tru9I	TTAA	3 cut(s)	110, 192, 287
TscAI	CASTG	5 cut(s)	40, 220, 239, 253, 337
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	401, 404
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	75, 111, 330, 366
TspRI	CASTG	5 cut(s)	40, 220, 239, 253, 337
XapI	RAATTY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	3 cut(s)	252, 375, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.