Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002266.1

Orthogroup ID

OG0010919

Physical Location & Seq

Genomic Coordinates Reverse (-)

87832 .. 88528

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002266.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgttgcggaacttgagagatgccagtgaaccaccattgcagtgtgatatggtcactgctagcatatctgcaccagagagttttcagaaagatttaacaacacagttgccaaatacaaataatgaagttggtgattccagtgaaaatcagatgacagatgaacagagagccagaatggaagctagcaggttgaaggcacttgagaaagctgcagctaggcgccgccaattgcaggtggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Swi3 zf-CCHC

Protein Analysis

80

Amino Acids

8.96

Weight (kDa)

5.36

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02820 AT3G02820
fragaria_vesca	FvH4_4g36440 FvH4_4g36440
malus_domestica	MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica	Prupe.1G343500_v2.0.a1
pyrus_communis	pycom13g00780 pycom16g00680
rosa_chinensis	RchiOBHm_Chr4g0446201
rosa_laevigata	RLG00000005683
rosa_multiflora	Rmu_sc0002266.1_g000014
rosa_roxburghii	Rroxscaffold_5G00386600
rosa_rugosa	Rorug04G0368400
rosa_samantha	Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana	Rw4G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	2 cut(s)	177, 223
AccB1I	GGYRCC	1 cut(s)	219
AciI	CCGC	2 cut(s)	7, 223
AcyI	GRCGYC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	3 cut(s)	182, 209, 215
AluI	AGCT	3 cut(s)	182, 209, 215
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	209, 212
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	143
AsuNHI	GCTAGC	2 cut(s)	59, 182
BanI	GGYRCC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	196, 224
BfaI	CTAG	3 cut(s)	60, 183, 216
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	223
BfuAI	ACCTGC	2 cut(s)	177, 223
BisI	GCNGC	3 cut(s)	210, 213, 223
BlsI	GCNGC	3 cut(s)	211, 214, 224
BmiI	GGNNCC	1 cut(s)	221
BmsI	GCATC	1 cut(s)	10
BmtI	GCTAGC	2 cut(s)	63, 186
BpuEI	CTTGAG	2 cut(s)	34, 221
BsaHI	GRCGYC	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	24, 138
Bse3DI	GCAATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	24, 138
BseXI	GCAGC	2 cut(s)	196, 224
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	1 cut(s)	239
BspACI	CCGC	2 cut(s)	7, 223
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	2 cut(s)	177, 223
BspOI	GCTAGC	2 cut(s)	63, 186
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	24, 138
BssNI	GRCGYC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	61, 184
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	196, 224
BsuRI	GGCC	1 cut(s)	239
BtsI	GCAGTG	2 cut(s)	47, 54
BtsIMutI	CAGTG	4 cut(s)	31, 47, 54, 145
BveI	ACCTGC	2 cut(s)	177, 223
Cac8I	GCNNGC	2 cut(s)	61, 184
CfoI	GCGC	1 cut(s)	222
CviJI	RGCY	5 cut(s)	170, 182, 209, 215, 239
CviKI_1	RGCY	5 cut(s)	170, 182, 209, 215, 239
DinI	GGCGCC	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	221
EheI	GGCGCC	1 cut(s)	221
FaiI	YATR	2 cut(s)	50, 65
Fnu4HI	GCNGC	3 cut(s)	210, 213, 223
Fsp4HI	GCNGC	3 cut(s)	210, 213, 223
FspBI	CTAG	3 cut(s)	60, 183, 216
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	210, 213, 223
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	87, 150
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	40, 71, 212, 232
Hsp92I	GRCGYC	1 cut(s)	220
HspAI	GCGC	1 cut(s)	220
KasI	GGCGCC	1 cut(s)	219
LpnPI	CCDG	6 cut(s)	37, 87, 151, 172, 184, 218
Lsp1109I	GCAGC	2 cut(s)	196, 224
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	60, 183, 216
MaeIII	GTNAC	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	227
MluCI	AATT	1 cut(s)	227
Mly113I	GGCGCC	1 cut(s)	220
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	220
NheI	GCTAGC	2 cut(s)	59, 182
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	211, 214, 224
PluTI	GGCGCC	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	3 cut(s)	210, 213, 223
SetI	ASST	5 cut(s)	184, 191, 211, 217, 237
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	13, 200
SmoI	CTYRAG	2 cut(s)	13, 200
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	7, 223
SspDI	GGCGCC	1 cut(s)	219
SspMI	CTAG	3 cut(s)	60, 183, 216
TaaI	ACNGT	1 cut(s)	105
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	4 cut(s)	31, 47, 61, 145
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	209, 212
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	138, 174
TspRI	CASTG	4 cut(s)	31, 47, 61, 145
XspI	CTAG	3 cut(s)	60, 183, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.