pycom13g00780

Chromosome segregation in meiosis protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010919
Physical Location & Seq
Reverse (-)
486555 .. 488588
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00780.3

Sequence Viewer

Length: 981 bp
ATGGCCTTTTCTAATTCCCTCCAATTCTTCCCACCAAAACATCACGATCCAGTCGTCGGATTCAGAAAGCAAAATCCGAAGAAGAAAATGGACAAGGCACCAGCAGCAACCGGCTGCTACAAGTGCGGCCGACCAGGCCACTGGTCACGTGACTGCCCCTCCTCCTCCGCCCCTACCCCCAATTCTAACGCCGATCCCAATCCCAATCCCAATCCCAACCCTAATCCCACCAATCCCAATTCCTCTTCATATCCTTTCAAAAGCGGTACTGGTACTGGGATCGGAGGGAAGGTTAAGAAGGTGTCGGTTCCGAAGACTCGGCCGAAGCTGACTCCGGAGCTGCTTCTCTCAGATGACGGCCTCGGCTACGTCCTCCGCCACTTCCCTCGCGCCTTCAAGTACCGCGGCCGCGGACACGAGGTTAGAGATTTGGGAAATCTAATTGGGTTGTACACACAATGGCATTCGCGTTTGCTCCCGTATTACTCATTTGATCAGTTTGTTCATAAGGTCGAACAAGTTGCCGCTACCAGACGAGTAAAGATGACGCTGAGGGAATTGAGAGAAAGAGTTGCAAGTGGAGGAGACCCAACAAAGTTGCGCGAACCACCAGCCGAGGAAGGCATTCCGAATGATCAACAGGAAACCTTGAACCCTGAGGGACCAAGTGATTACCAGGGGGGTTCGTCTTCAGGGAACCATGATGTGGATGATATGCAGGAAGAGATGCTTCATGAAATCTATGAGAAAGCTACTCAAGAACCGTCTGAGACGTTCCATGGTGAGATGGTTGCCGCTAGTGCTAGTATATCTGCAGCAGATAGTTTCCAGAAAGAAATAACCAATCAAGTCGAAAACAATGAAGCTAGGGAATCCACTGAAAATCAGATGACAGATGAACAGAAAGCGCGAATGGAAGCTAATAGATTGAAGGCACTTGAGAAAGCTGCAGCTAGGTGCCGCCAATTGCAGGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Swi3 zf-CCHC

Protein Analysis

327

Amino Acids

36.23

Weight (kDa)

8.24

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02820 AT3G02820
fragaria_vesca FvH4_4g36440 FvH4_4g36440
malus_domestica MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica Prupe.1G343500_v2.0.a1
pyrus_communis pycom13g00780 pycom16g00680
rosa_chinensis RchiOBHm_Chr4g0446201
rosa_laevigata RLG00000005683
rosa_multiflora Rmu_sc0002266.1_g000014
rosa_roxburghii Rroxscaffold_5G00386600
rosa_rugosa Rorug04G0368400
rosa_samantha Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana Rw4G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 961
Acc36I ACCTGC 1 cut(s) 961
AccB1I GGYRCC 2 cut(s) 97, 957
AccB7I CCANNNNNTGG 1 cut(s) 706
AccII CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
AccIII TCCGGA 1 cut(s) 334
AclWI GGATC 3 cut(s) 41, 188, 287
AcoI YGGCCR 3 cut(s) 127, 320, 406
AcuI CTGAAG 1 cut(s) 675
AcvI CACGTG 1 cut(s) 149
AfaI GTAC 4 cut(s) 268, 274, 401, 452
AfiI CCNNNNNNNGG 3 cut(s) 56, 706, 970
AgsI TTSAA 4 cut(s) 259, 397, 652, 931
AjnI CCWGG 2 cut(s) 133, 675
AluBI AGCT 7 cut(s) 328, 340, 752, 866, 920, 947, 953
AluI AGCT 7 cut(s) 328, 340, 752, 866, 920, 947, 953
Alw26I GTCTC 2 cut(s) 579, 764
AlwI GGATC 3 cut(s) 41, 188, 287
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 6 cut(s) 3, 127, 136, 320, 358, 406
ApeKI GCWGC 6 cut(s) 104, 114, 340, 815, 947, 950
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 3 cut(s) 392, 603, 910
AspS9I GGNCC 1 cut(s) 662
AsuHPI GGTGA 1 cut(s) 794
AvaII GGWCC 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 657
BanI GGYRCC 2 cut(s) 97, 957
BauI CACGAG 1 cut(s) 416
BbrPI CACGTG 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 320, 681
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 6 cut(s) 101, 116, 327, 827, 934, 962
BccI CCATC 1 cut(s) 781
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 2 cut(s) 135, 677
BclI TGATCA 2 cut(s) 493, 634
BcoDI GTCTC 2 cut(s) 579, 764
BfaI CTAG 4 cut(s) 798, 804, 867, 954
BfmI CTRYAG 2 cut(s) 813, 948
BfuAI ACCTGC 1 cut(s) 961
BglI GCCNNNNNGGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 135, 677
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 1 cut(s) 662
BmiI GGNNCC 5 cut(s) 99, 309, 663, 698, 959
BmrFI CCNGG 2 cut(s) 135, 677
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 285
BpiI GAAGAC 2 cut(s) 320, 681
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 741, 959
BsaAI YACGTR 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 579
BsaJI CCNNGG 6 cut(s) 361, 403, 409, 615, 676, 778
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 706, 970
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 4 cut(s) 50, 146, 274, 280
Bse21I CCTNAGG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 2 cut(s) 135, 677
BseDI CCNNGG 6 cut(s) 361, 403, 409, 615, 676, 778
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 56, 706, 970
BseMII CTCAG 4 cut(s) 363, 542, 648, 759
BseNI ACTGG 4 cut(s) 50, 146, 274, 280
BseRI GAGGAG 3 cut(s) 151, 154, 597
BseX3I CGGCCG 3 cut(s) 127, 320, 406
BseXI GCAGC 6 cut(s) 101, 116, 327, 827, 934, 962
Bsh1236I CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
Bsh1285I CGRYCG 3 cut(s) 130, 323, 409
BshFI GGCC 6 cut(s) 5, 129, 138, 322, 360, 408
BshNI GGYRCC 2 cut(s) 97, 957
BsiEI CGRYCG 3 cut(s) 130, 323, 409
BsiSI CCGG 2 cut(s) 111, 335
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 3 cut(s) 56, 706, 970
BsmAI GTCTC 2 cut(s) 579, 764
BsmBI CGTCTC 1 cut(s) 764
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 2 cut(s) 463, 624
BsnI GGCC 6 cut(s) 5, 129, 138, 322, 360, 408
Bso31I GGTCTC 1 cut(s) 579
Bsp13I TCCGGA 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 5 cut(s) 46, 193, 279, 493, 634
Bsp19I CCATGG 1 cut(s) 778
BspANI GGCC 6 cut(s) 5, 129, 138, 322, 360, 408
BspCNI CTCAG 4 cut(s) 362, 543, 649, 760
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 5 cut(s) 99, 309, 663, 698, 959
BspMAI CTGCAG 2 cut(s) 817, 952
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 3 cut(s) 41, 188, 287
BspT107I GGYRCC 2 cut(s) 97, 957
BspTNI GGTCTC 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 4 cut(s) 50, 146, 274, 280
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 6 cut(s) 361, 403, 409, 615, 676, 778
BssMI GATC 5 cut(s) 46, 193, 279, 493, 634
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 778
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 135, 677
Bst4CI ACNGT 1 cut(s) 765
Bst6I CTCTTC 2 cut(s) 250, 717
BstAUI TGTACA 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 149
BstDEI CTNAG 4 cut(s) 349, 551, 657, 768
BstDSI CCRYGG 3 cut(s) 403, 409, 778
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
BstHHI GCGC 3 cut(s) 392, 603, 910
BstKTI GATC 5 cut(s) 49, 196, 282, 496, 637
BstMAI GTCTC 2 cut(s) 579, 764
BstMBI GATC 5 cut(s) 46, 193, 279, 493, 634
BstMCI CGRYCG 3 cut(s) 130, 323, 409
BstMWI GCNNNNNNNGC 4 cut(s) 104, 123, 135, 800
BstNI CCWGG 2 cut(s) 135, 677
BstSCI CCNGG 2 cut(s) 133, 675
BstSFI CTRYAG 2 cut(s) 813, 948
BstUI CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
BstV1I GCAGC 6 cut(s) 101, 116, 327, 827, 934, 962
BstV2I GAAGAC 2 cut(s) 320, 681
BstXI CCANNNNNNTGG 1 cut(s) 141
BstZI CGGCCG 3 cut(s) 127, 320, 406
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 6 cut(s) 5, 129, 138, 322, 360, 408
BtgI CCRYGG 3 cut(s) 403, 409, 778
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 139, 876
BveI ACCTGC 1 cut(s) 961
CciI TCATGA 1 cut(s) 733
CciNI GCGGCCGC 1 cut(s) 406
CfoI GCGC 3 cut(s) 392, 603, 910
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 662
Cfr42I CCGCGG 2 cut(s) 406, 412
CseI GACGC 1 cut(s) 556
Csp6I GTAC 4 cut(s) 267, 273, 400, 451
CviAII CATG 3 cut(s) 701, 734, 779
CviQI GTAC 4 cut(s) 267, 273, 400, 451
DdeI CTNAG 4 cut(s) 349, 551, 657, 768
DpnI GATC 5 cut(s) 48, 195, 281, 495, 636
DpnII GATC 5 cut(s) 46, 193, 279, 493, 634
EaeI YGGCCR 3 cut(s) 127, 320, 406
EagI CGGCCG 3 cut(s) 127, 320, 406
Eam1104I CTCTTC 2 cut(s) 250, 717
EarI CTCTTC 2 cut(s) 250, 717
EciI GGCGGA 2 cut(s) 157, 365
EclXI CGGCCG 3 cut(s) 127, 320, 406
Eco130I CCWWGG 1 cut(s) 778
Eco31I GGTCTC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 662
Eco52I CGGCCG 3 cut(s) 127, 320, 406
Eco57I CTGAAG 1 cut(s) 675
Eco72I CACGTG 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 133, 675
EcoT14I CCWWGG 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 764
FaeI CATG 3 cut(s) 704, 737, 782
FaiI YATR 8 cut(s) 250, 507, 702, 716, 735, 744, 780, 809
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 1 cut(s) 675
FatI CATG 3 cut(s) 700, 733, 778
FbaI TGATCA 2 cut(s) 493, 634
FokI GGATG 1 cut(s) 722
FspBI CTAG 4 cut(s) 798, 804, 867, 954
GlaI GCGC 3 cut(s) 391, 602, 909
HaeIII GGCC 6 cut(s) 5, 129, 138, 322, 360, 408
HapII CCGG 2 cut(s) 111, 335
HgaI GACGC 1 cut(s) 556
HhaI GCGC 3 cut(s) 392, 603, 910
Hin1II CATG 3 cut(s) 704, 737, 782
Hin6I GCGC 3 cut(s) 390, 601, 908
HinP1I GCGC 3 cut(s) 390, 601, 908
HinfI GANTC 4 cut(s) 60, 316, 331, 872
HpaII CCGG 2 cut(s) 111, 335
HphI GGTGA 1 cut(s) 794
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 9 cut(s) 59, 65, 78, 284, 312, 352, 630, 769, 888
Hpy188III TCNNGA 5 cut(s) 44, 335, 734, 758, 829
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 283, 292, 403, 614, 925
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4IV ACGT 3 cut(s) 148, 369, 773
HpyCH4V TGCA 5 cut(s) 575, 718, 815, 950, 970
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 123, 135, 800
HpyF3I CTNAG 4 cut(s) 349, 551, 657, 768
HpySE526I ACGT 3 cut(s) 148, 369, 773
Hsp92II CATG 3 cut(s) 704, 737, 782
HspAI GCGC 3 cut(s) 390, 601, 908
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 2 cut(s) 493, 634
KspI CCGCGG 2 cut(s) 406, 412
Kzo9I GATC 5 cut(s) 46, 193, 279, 493, 634
LmnI GCTCC 2 cut(s) 337, 480
Lsp1109I GCAGC 6 cut(s) 101, 116, 327, 827, 934, 962
LweI GCATC 1 cut(s) 717
MaeI CTAG 4 cut(s) 798, 804, 867, 954
MaeII ACGT 3 cut(s) 148, 369, 773
MaeIII GTNAC 2 cut(s) 144, 149
MalI GATC 5 cut(s) 48, 195, 281, 495, 636
MboI GATC 5 cut(s) 46, 193, 279, 493, 634
MboII GAAGA 7 cut(s) 19, 91, 94, 237, 325, 681, 734
MfeI CAATTG 1 cut(s) 965
MluCI AATT 7 cut(s) 13, 23, 181, 238, 441, 557, 965
MlyI GAGTC 2 cut(s) 310, 325
MmeI TCCRAC 1 cut(s) 37
MroI TCCGGA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 2 cut(s) 405, 411
MspI CCGG 2 cut(s) 111, 335
MspR9I CCNGG 2 cut(s) 135, 677
MunI CAATTG 1 cut(s) 965
Mva1269I GAATGC 2 cut(s) 463, 624
MvaI CCWGG 2 cut(s) 135, 677
MvnI CGCG 6 cut(s) 390, 405, 411, 469, 603, 910
MwoI GCNNNNNNNGC 4 cut(s) 104, 123, 135, 800
NcoI CCATGG 1 cut(s) 778
NdeII GATC 5 cut(s) 46, 193, 279, 493, 634
NlaIII CATG 3 cut(s) 704, 737, 782
NlaIV GGNNCC 5 cut(s) 99, 309, 663, 698, 959
NmeAIII GCCGAG 3 cut(s) 298, 342, 640
NmuCI GTSAC 2 cut(s) 144, 149
NotI GCGGCCGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 733
PaqCI CACCTGC 1 cut(s) 961
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 463, 624
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 60, 872
PflMI CCANNNNNTGG 1 cut(s) 706
PleI GAGTC 2 cut(s) 310, 325
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
PpsI GAGTC 2 cut(s) 310, 325
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 133, 675
PspCI CACGTG 1 cut(s) 149
PspGI CCWGG 2 cut(s) 133, 675
PspN4I GGNNCC 5 cut(s) 99, 309, 663, 698, 959
PspPI GGNCC 1 cut(s) 662
PstI CTGCAG 2 cut(s) 817, 952
RsaI GTAC 4 cut(s) 268, 274, 401, 452
RsaNI GTAC 4 cut(s) 267, 273, 400, 451
SacII CCGCGG 2 cut(s) 406, 412
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 5 cut(s) 46, 193, 279, 493, 634
Sau96I GGNCC 1 cut(s) 662
SchI GAGTC 2 cut(s) 310, 325
ScrFI CCNGG 2 cut(s) 135, 677
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 2 cut(s) 813, 948
SfiI GGCCNNNNNGGCC 1 cut(s) 135
Sfr303I CCGCGG 2 cut(s) 406, 412
SgrBI CCGCGG 2 cut(s) 406, 412
SinI GGWCC 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 756, 938
SmoI CTYRAG 2 cut(s) 756, 938
Sse9I AATT 7 cut(s) 13, 23, 181, 238, 441, 557, 965
SspMI CTAG 4 cut(s) 798, 804, 867, 954
StyD4I CCNGG 2 cut(s) 133, 675
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 1 cut(s) 765
TaiI ACGT 3 cut(s) 151, 372, 776
TaqI TCGA 2 cut(s) 513, 852
TasI AATT 7 cut(s) 13, 23, 181, 238, 441, 557, 965
TatI WGTACW 1 cut(s) 450
TauI GCSGC 6 cut(s) 129, 408, 411, 527, 797, 963
TfiI GAWTC 2 cut(s) 60, 872
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 146, 883
TseFI GTSAC 2 cut(s) 144, 149
TseI GCWGC 6 cut(s) 104, 114, 340, 815, 947, 950
Tsp45I GTSAC 2 cut(s) 144, 149
TspDTI ATGAA 6 cut(s) 237, 494, 722, 750, 876, 912
TspRI CASTG 2 cut(s) 146, 883
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 4 cut(s) 798, 804, 867, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.