Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010919

Physical Location & Seq

Genomic Coordinates Forward (+)

58034577 .. 58036858

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAAGCCAGCAGCAACGGGATGCTACAAGTGTGGCCGACCTGGCCACTGGTCACGTGACTGCCCTTCCTCCGCTCCCAATTCCAACCCCGATTCCAACCCAAACCCTAACCCTAGGCCCGCCAATCCCAATTCCTCATCTTATGCTTTCAAGAACAGTACCGGCACCGGAGCCGGAGCTTCCAAAGGGAAAAAGGTCTCGGCTCCGAAGACTCGGCCGAAGCTGACCCCGGAGCTGCTTCTCTCCGACGATGGCCTCGGGTACATCCTCCGCCATTTCCCTAAATCCTTCAAGTACCGCGGCCGCGGACACGAGGTTAGGGATTTGGGGAACCTAATTGGGTTGTACACAGAGTGGCACTCTCGTTTGCTGCCGTATTACTCATTCGATCAGTTTGTGCATAAGGTGGAACAAGTGGCGGCCACGAAACGAGTCAAGATGTCTCTCAGAGAATTGAGAGAAAGAGTGGCCAGTGGAGGAGACCTAACAAAGTTGCATGAACCGCCTGTTATTGAAGAAGACATTCCAAATGACGAACACGGTATGCTCGTTTTTTCTTTGCAATATGGATACTTAGTTAGATGCCGGCTTTTCAATGCGTTTTTCTTCTTTTCGTTGCTGCTGAGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Swi3 zf-CCHC

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

9.45

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	8 - 24	2.3e-08	Zinc knuckle
Swi3	PF07962	75 - 156	9.9e-26	Replication Fork Protection Component Swi3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02820 AT3G02820
fragaria_vesca	FvH4_4g36440 FvH4_4g36440
malus_domestica	MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica	Prupe.1G343500_v2.0.a1
pyrus_communis	pycom13g00780 pycom16g00680
rosa_chinensis	RchiOBHm_Chr4g0446201
rosa_laevigata	RLG00000005683
rosa_multiflora	Rmu_sc0002266.1_g000014
rosa_roxburghii	Rroxscaffold_5G00386600
rosa_rugosa	Rorug04G0368400
rosa_samantha	Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana	Rw4G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	77
AccII	CGCG	2 cut(s)	303, 309
AciI	CCGC	9 cut(s)	75, 123, 274, 301, 303, 307, 309, 422, 506
AcoI	YGGCCR	6 cut(s)	37, 46, 218, 304, 423, 471
AcvI	CACGTG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	357
AfaI	GTAC	4 cut(s)	163, 266, 299, 350
AgsI	TTSAA	4 cut(s)	154, 295, 518, 598
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	182, 226, 238
AluI	AGCT	3 cut(s)	182, 226, 238
Alw26I	GTCTC	3 cut(s)	205, 450, 477
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	8 cut(s)	37, 46, 119, 218, 256, 304, 423, 471
ApeKI	GCWGC	4 cut(s)	14, 238, 373, 622
Asp700I	GAANNNNTTC	1 cut(s)	525
AspA2I	CCTAGG	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	260
AvrII	CCTAGG	1 cut(s)	116
BalI	TGGCCA	2 cut(s)	48, 473
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	218, 528
BbvI	GCAGC	4 cut(s)	26, 225, 360, 609
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	205, 450, 477
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	7 cut(s)	15, 239, 304, 307, 374, 423, 623
BlnI	CCTAGG	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	7 cut(s)	16, 240, 305, 308, 375, 424, 624
Bme1390I	CCNGG	2 cut(s)	45, 233
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	4 cut(s)	169, 175, 207, 335
BmrFI	CCNGG	2 cut(s)	45, 233
BmsI	GCATC	2 cut(s)	14, 575
BpiI	GAAGAC	2 cut(s)	218, 528
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
Bpu1102I	GCTNAGC	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	205, 477
BsaJI	CCNNGG	5 cut(s)	116, 231, 259, 301, 307
BsaWI	WCCGGW	1 cut(s)	170
Bse118I	RCCGGY	2 cut(s)	164, 588
Bse1I	ACTGG	2 cut(s)	56, 474
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	5 cut(s)	116, 231, 259, 301, 307
BseGI	GGATG	2 cut(s)	29, 267
BseMII	CTCAG	2 cut(s)	463, 617
BseNI	ACTGG	2 cut(s)	56, 474
BseRI	GAGGAG	1 cut(s)	495
BseX3I	CGGCCG	2 cut(s)	218, 304
BseXI	GCAGC	4 cut(s)	26, 225, 360, 609
Bsh1236I	CGCG	2 cut(s)	303, 309
Bsh1285I	CGRYCG	2 cut(s)	221, 307
BshFI	GGCC	8 cut(s)	39, 48, 121, 220, 258, 306, 425, 473
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	221, 307
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	5 cut(s)	165, 171, 177, 233, 589
BsmAI	GTCTC	3 cut(s)	205, 450, 477
BsnI	GGCC	8 cut(s)	39, 48, 121, 220, 258, 306, 425, 473
Bso31I	GGTCTC	2 cut(s)	205, 477
BsoBI	CYCGRG	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	626
BspACI	CCGC	9 cut(s)	75, 123, 274, 301, 303, 307, 309, 422, 506
BspANI	GGCC	8 cut(s)	39, 48, 121, 220, 258, 306, 425, 473
BspCNI	CTCAG	2 cut(s)	462, 618
BspFNI	CGCG	2 cut(s)	303, 309
BspLI	GGNNCC	4 cut(s)	169, 175, 207, 335
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	2 cut(s)	205, 477
BsrBI	CCGCTC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	164, 588
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	56, 474
BssAI	RCCGGY	2 cut(s)	164, 588
BssECI	CCNNGG	5 cut(s)	116, 231, 259, 301, 307
BssMI	GATC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	161, 545
BstAUI	TGTACA	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	12, 123, 590
BstDEI	CTNAG	3 cut(s)	449, 577, 626
BstDSI	CCRYGG	2 cut(s)	301, 307
BstF5I	GGATG	2 cut(s)	29, 267
BstFNI	CGCG	2 cut(s)	303, 309
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	3 cut(s)	205, 450, 477
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	2 cut(s)	221, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 505
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 231
BstUI	CGCG	2 cut(s)	303, 309
BstV1I	GCAGC	4 cut(s)	26, 225, 360, 609
BstV2I	GAAGAC	2 cut(s)	218, 528
BstZI	CGGCCG	2 cut(s)	218, 304
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	8 cut(s)	39, 48, 121, 220, 258, 306, 425, 473
BtgI	CCRYGG	2 cut(s)	301, 307
BtsCI	GGATG	2 cut(s)	29, 267
BtsIMutI	CAGTG	2 cut(s)	49, 481
Cac8I	GCNNGC	3 cut(s)	12, 123, 590
CciNI	GCGGCCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	164, 588
Cfr13I	GGNCC	1 cut(s)	120
Cfr42I	CCGCGG	2 cut(s)	304, 310
Csp6I	GTAC	4 cut(s)	162, 265, 298, 349
CviAII	CATG	1 cut(s)	500
CviQI	GTAC	4 cut(s)	162, 265, 298, 349
DdeI	CTNAG	3 cut(s)	449, 577, 626
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	357
EaeI	YGGCCR	6 cut(s)	37, 46, 218, 304, 423, 471
EagI	CGGCCG	2 cut(s)	218, 304
EciI	GGCGGA	1 cut(s)	263
EclXI	CGGCCG	2 cut(s)	218, 304
Eco130I	CCWWGG	1 cut(s)	116
Eco31I	GGTCTC	2 cut(s)	205, 477
Eco52I	CGGCCG	2 cut(s)	218, 304
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	1 cut(s)	503
FaiI	YATR	5 cut(s)	147, 405, 501, 548, 570
FatI	CATG	1 cut(s)	499
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	7 cut(s)	15, 239, 304, 307, 374, 423, 623
FokI	GGATG	2 cut(s)	36, 254
Fsp4HI	GCNGC	7 cut(s)	15, 239, 304, 307, 374, 423, 623
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	7 cut(s)	15, 239, 304, 307, 374, 423, 623
HaeIII	GGCC	8 cut(s)	39, 48, 121, 220, 258, 306, 425, 473
HapII	CCGG	5 cut(s)	165, 171, 177, 233, 589
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	3 cut(s)	95, 214, 435
HpaII	CCGG	5 cut(s)	165, 171, 177, 233, 589
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	3 cut(s)	210, 250, 452
Hpy188III	TCNNGA	2 cut(s)	154, 439
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	78, 301
HpyCH4III	ACNGT	2 cut(s)	161, 545
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	403, 499, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 505
HpyF3I	CTNAG	3 cut(s)	449, 577, 626
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
KspI	CCGCGG	2 cut(s)	304, 310
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	5 cut(s)	82, 173, 179, 211, 235
Lsp1109I	GCAGC	4 cut(s)	26, 225, 360, 609
LweI	GCATC	2 cut(s)	14, 575
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	54, 59
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	1 cut(s)	391
MboII	GAAGA	4 cut(s)	223, 530, 533, 601
MlsI	TGGCCA	2 cut(s)	48, 473
MluCI	AATT	4 cut(s)	82, 133, 339, 455
MluNI	TGGCCA	2 cut(s)	48, 473
MlyI	GAGTC	2 cut(s)	208, 444
MmeI	TCCRAC	3 cut(s)	111, 123, 273
MnlI	CCTC	6 cut(s)	82, 148, 269, 281, 310, 473
Mox20I	TGGCCA	2 cut(s)	48, 473
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	2 cut(s)	48, 473
MseI	TTAA	1 cut(s)	634
Msp20I	TGGCCA	2 cut(s)	48, 473
MspA1I	CMGCKG	2 cut(s)	303, 309
MspI	CCGG	5 cut(s)	165, 171, 177, 233, 589
MspR9I	CCNGG	2 cut(s)	45, 233
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	2 cut(s)	303, 309
MwoI	GCNNNNNNNGC	2 cut(s)	45, 505
NaeI	GCCGGC	1 cut(s)	590
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	391
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	4 cut(s)	169, 175, 207, 335
NmeAIII	GCCGAG	2 cut(s)	182, 196
NmuCI	GTSAC	2 cut(s)	54, 59
NotI	GCGGCCGC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	16, 240, 305, 308, 375, 424, 624
PleI	GAGTC	2 cut(s)	208, 443
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	2 cut(s)	208, 443
Ppu21I	YACGTR	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	169, 175, 207, 335
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	4 cut(s)	163, 266, 299, 350
RsaNI	GTAC	4 cut(s)	162, 265, 298, 349
SacII	CCGCGG	2 cut(s)	304, 310
SaqAI	TTAA	1 cut(s)	634
SatI	GCNGC	7 cut(s)	15, 239, 304, 307, 374, 423, 623
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	208, 444
ScrFI	CCNGG	2 cut(s)	45, 233
SfaNI	GCATC	2 cut(s)	14, 575
SfiI	GGCCNNNNNGGCC	1 cut(s)	45
Sfr303I	CCGCGG	2 cut(s)	304, 310
SgrBI	CCGCGG	2 cut(s)	304, 310
Sse9I	AATT	4 cut(s)	82, 133, 339, 455
SsiI	CCGC	9 cut(s)	75, 123, 274, 301, 303, 307, 309, 422, 506
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	43, 231
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	161, 545
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	82, 133, 339, 455
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	3 cut(s)	306, 309, 425
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	634
Tru9I	TTAA	1 cut(s)	634
TscAI	CASTG	2 cut(s)	56, 481
TseFI	GTSAC	2 cut(s)	54, 59
TseI	GCWGC	4 cut(s)	14, 238, 373, 622
Tsp45I	GTSAC	2 cut(s)	54, 59
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	56, 481
XmaJI	CCTAGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.