MD04G1110600.v1.1

Chromosome segregation in meiosis protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0010919
Physical Location & Seq
Forward (+)
19521667 .. 19523653
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1110600.v1.1.491

Sequence Viewer

Length: 174 bp
ATGCAGGAAGAGACGATTCATGAAATCTATGAGAAAGCTACTCAAGAACCGTATGAGACGTTCCATGGTGAGATGGTTGCTGCTAGTGCTTGTATATCTGCAGCAGATAGTTTCCAGAAAGAAATAACCAATCAAGTCGAAAACAATGAAGCTAGGGAATCCACTGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Swi3 zf-CCHC

Protein Analysis

58

Amino Acids

6.48

Weight (kDa)

4.23

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02820 AT3G02820
fragaria_vesca FvH4_4g36440 FvH4_4g36440
malus_domestica MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica Prupe.1G343500_v2.0.a1
pyrus_communis pycom13g00780 pycom16g00680
rosa_chinensis RchiOBHm_Chr4g0446201
rosa_laevigata RLG00000005683
rosa_multiflora Rmu_sc0002266.1_g000014
rosa_roxburghii Rroxscaffold_5G00386600
rosa_rugosa Rorug04G0368400
rosa_samantha Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana Rw4G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 38, 152
AluI AGCT 2 cut(s) 38, 152
Alw26I GTCTC 2 cut(s) 5, 50
ApeKI GCWGC 2 cut(s) 80, 101
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 2 cut(s) 67, 113
BccI CCATC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 5, 50
BfaI CTAG 2 cut(s) 84, 153
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 81, 102
BlsI GCNGC 2 cut(s) 82, 103
BpuEI CTTGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 67, 113
BsmAI GTCTC 2 cut(s) 5, 50
BsmBI CGTCTC 2 cut(s) 5, 50
Bsp19I CCATGG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 64
BstMAI GTCTC 2 cut(s) 5, 50
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 67, 113
BtgI CCRYGG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 19
CviAII CATG 2 cut(s) 20, 65
CviJI RGCY 2 cut(s) 38, 152
CviKI_1 RGCY 2 cut(s) 38, 152
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 2 cut(s) 5, 50
FaeI CATG 2 cut(s) 23, 68
FaiI YATR 5 cut(s) 21, 30, 54, 66, 95
FatI CATG 2 cut(s) 19, 64
Fnu4HI GCNGC 2 cut(s) 81, 102
Fsp4HI GCNGC 2 cut(s) 81, 102
FspBI CTAG 2 cut(s) 84, 153
FspEI CC 8 cut(s) 51, 59, 63, 77, 128, 139, 140, 142
GluI GCNGC 2 cut(s) 81, 102
Hin1II CATG 2 cut(s) 23, 68
HinfI GANTC 2 cut(s) 16, 158
HphI GGTGA 1 cut(s) 80
Hpy188III TCNNGA 3 cut(s) 20, 44, 115
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 4, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 2 cut(s) 23, 68
LpnPI CCDG 1 cut(s) 128
Lsp1109I GCAGC 2 cut(s) 67, 113
MaeI CTAG 2 cut(s) 84, 153
MaeII ACGT 1 cut(s) 59
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 64
NlaIII CATG 2 cut(s) 23, 68
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 2 cut(s) 16, 158
PkrI GCNGC 2 cut(s) 82, 103
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PstI CTGCAG 1 cut(s) 103
SatI GCNGC 2 cut(s) 81, 102
SetI ASST 3 cut(s) 40, 62, 154
SfcI CTRYAG 1 cut(s) 99
SgeI CNNG 9 cut(s) 17, 32, 56, 77, 96, 102, 127, 146, 165
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 1 cut(s) 169
SspMI CTAG 2 cut(s) 84, 153
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 169
TfiI GAWTC 2 cut(s) 16, 158
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 80, 101
TspDTI ATGAA 3 cut(s) 8, 36, 162
TspRI CASTG 1 cut(s) 169
XspI CTAG 2 cut(s) 84, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.