RLG00000005683

Chromosome segregation in meiosis protein 3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
797935 .. 800012
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005683

Sequence Viewer

Length: 876 bp
ATGGAGAAGCCAGCAGCAACGGGATGCTACAAGTGTGGCCGACCTGGCCACTGGTCACGTGACTGCCCTTCCTCCGCTCCCAATTCCAACCCCGATTCCAACCCAAACCCTAACCCTAGGCCCGCCAATCCCAATTCCCCCTCTTATGCTTTCAAGAACAGTACCGGTCCCGGAGCCGGAGCTTCCAAAGGGAAAAAGGTCTCGGCTCCGAAGACTCGGCCGAAGCTGACCCCGGAGCTGCTTCTCTCCGACGATGGCCTCGGGTACATCCTCCGCCATTTCCCTAAATCCTTCAAGTACCGCGGCCGCGGACACGAGGTTAGGGATTTGGGGAACCTAATTGGGTTCTACACAGAGTGGCACTCTCGTTTGCTGCCATATTACTCATTCGATCAGTTTGTGCATAAGGTGGAACAAGTGGCAGCCACGAAACGAGTCAAGATGTCTCTCAGAGAATTGAGAGAAAGAGTGGCCAGTGGAGGAGACCTAACAAAGTTGCATGAACCGCCGGTTATTGAAGAAGACATTCCAAATGATGAACACGAAACTTTAAACCCCGAGAGACCATCTGATCACCAGAAAGATCCATCTTCAGAGAACCATGATGATGATTTTATGCAGGAAGATATGCTTAACGAAATTTACGAGAAAGCCACTGAAGAACCACCATTGCAGTGTGATATGGTCACTGCTAGCATATCTGCACCAGATAGTTTTCAGAAAGATTTAACAACACAGTTGCCAAATACAAATAATGAAGTTGGTGATTCCAGTGAAAATCGGATGACAGATGAACAGAGAGCCAGAATGGAAGCTAGCAGATTGAAGGCACTTGAGAAAGCTGCAGCCAGGCGCCGCCAATTGCAGGTGGCCTGA
Functional Annotation

Protein Analysis

292

Amino Acids

32.65

Weight (kDa)

6.17

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 8 - 24 3.5e-08 Zinc knuckle
Swi3 PF07962 75 - 156 5.1e-26 Replication Fork Protection Component Swi3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010919)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 77
AccII CGCG 2 cut(s) 303, 309
AciI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 506, 856
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 5 cut(s) 37, 46, 218, 304, 471
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 2 cut(s) 576, 678
AcvI CACGTG 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 853
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 3 cut(s) 163, 266, 299
AfiI CCNNNNNNNGG 2 cut(s) 176, 865
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 154, 295, 518, 826
AjnI CCWGG 2 cut(s) 43, 848
AluBI AGCT 5 cut(s) 182, 226, 238, 815, 842
AluI AGCT 5 cut(s) 182, 226, 238, 815, 842
Alw26I GTCTC 4 cut(s) 205, 450, 477, 556
AlwI GGATC 1 cut(s) 578
Ama87I CYCGRG 2 cut(s) 260, 557
AoxI GGCC 8 cut(s) 37, 46, 119, 218, 256, 304, 471, 870
ApeKI GCWGC 6 cut(s) 14, 238, 373, 422, 842, 845
ApoI RAATTY 1 cut(s) 639
AsiGI ACCGGT 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 525
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 120, 167
AsuC2I CCSGG 2 cut(s) 171, 233
AsuHPI GGTGA 2 cut(s) 566, 776
AsuNHI GCTAGC 2 cut(s) 692, 815
AvaI CYCGRG 2 cut(s) 260, 557
AvaII GGWCC 1 cut(s) 167
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 2 cut(s) 48, 473
BanI GGYRCC 1 cut(s) 852
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 218, 528
BbvI GCAGC 6 cut(s) 26, 225, 360, 434, 829, 857
BccI CCATC 3 cut(s) 248, 574, 595
BciT130I CCWGG 2 cut(s) 45, 850
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 2 cut(s) 171, 233
BcoDI GTCTC 4 cut(s) 205, 450, 477, 556
BfaI CTAG 3 cut(s) 117, 693, 816
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 856
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 9 cut(s) 15, 239, 304, 307, 374, 423, 843, 846, 856
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 9 cut(s) 16, 240, 305, 308, 375, 424, 844, 847, 857
Bme1390I CCNGG 4 cut(s) 45, 171, 233, 850
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 2 cut(s) 260, 557
BmgT120I GGNCC 2 cut(s) 120, 167
BmiI GGNNCC 5 cut(s) 169, 175, 207, 335, 854
BmrFI CCNGG 4 cut(s) 45, 171, 233, 850
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 2 cut(s) 696, 819
BpiI GAAGAC 2 cut(s) 218, 528
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 2 cut(s) 171, 233
BsaAI YACGTR 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 853
BsaI GGTCTC 3 cut(s) 205, 477, 556
BsaJI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 865
Bse118I RCCGGY 2 cut(s) 164, 508
Bse1I ACTGG 3 cut(s) 56, 474, 771
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 2 cut(s) 45, 850
BseDI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BseGI GGATG 3 cut(s) 29, 267, 789
BseLI CCNNNNNNNGG 2 cut(s) 176, 865
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 3 cut(s) 56, 474, 771
BseRI GAGGAG 1 cut(s) 495
BseX3I CGGCCG 2 cut(s) 218, 304
BseXI GCAGC 6 cut(s) 26, 225, 360, 434, 829, 857
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 2 cut(s) 303, 309
Bsh1285I CGRYCG 2 cut(s) 221, 307
BshFI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 473, 872
BshNI GGYRCC 1 cut(s) 852
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 2 cut(s) 221, 307
BsiHKCI CYCGRG 2 cut(s) 260, 557
BsiSI CCGG 5 cut(s) 165, 171, 177, 233, 509
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 176, 865
BsmAI GTCTC 4 cut(s) 205, 450, 477, 556
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 473, 872
Bso31I GGTCTC 3 cut(s) 205, 477, 556
BsoBI CYCGRG 2 cut(s) 260, 557
Bsp143I GATC 3 cut(s) 391, 571, 583
BspACI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 506, 856
BspANI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 473, 872
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 2 cut(s) 303, 309
BspLI GGNNCC 5 cut(s) 169, 175, 207, 335, 854
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 856
BspOI GCTAGC 2 cut(s) 696, 819
BspPI GGATC 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 852
BspTNI GGTCTC 3 cut(s) 205, 477, 556
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 2 cut(s) 164, 508
BsrI ACTGG 3 cut(s) 56, 474, 771
BssAI RCCGGY 2 cut(s) 164, 508
BssECI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BssMI GATC 3 cut(s) 391, 571, 583
BssNI GRCGYC 1 cut(s) 853
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 45, 850
Bst4CI ACNGT 2 cut(s) 161, 738
BstACI GRCGYC 1 cut(s) 853
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 12, 123, 694, 817
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 2 cut(s) 301, 307
BstF5I GGATG 3 cut(s) 29, 267, 789
BstFNI CGCG 2 cut(s) 303, 309
BstH2I RGCGCY 1 cut(s) 856
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 3 cut(s) 394, 574, 586
BstMAI GTCTC 4 cut(s) 205, 450, 477, 556
BstMBI GATC 3 cut(s) 391, 571, 583
BstMCI CGRYCG 2 cut(s) 221, 307
BstMWI GCNNNNNNNGC 2 cut(s) 45, 505
BstNI CCWGG 2 cut(s) 45, 850
BstSCI CCNGG 4 cut(s) 43, 169, 231, 848
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 2 cut(s) 303, 309
BstV1I GCAGC 6 cut(s) 26, 225, 360, 434, 829, 857
BstV2I GAAGAC 2 cut(s) 218, 528
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BstZI CGGCCG 2 cut(s) 218, 304
BsuRI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 473, 872
BtgI CCRYGG 2 cut(s) 301, 307
BtsCI GGATG 3 cut(s) 29, 267, 789
BtsI GCAGTG 2 cut(s) 680, 687
BtsIMutI CAGTG 6 cut(s) 49, 481, 654, 680, 687, 778
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 4 cut(s) 12, 123, 694, 817
CciNI GCGGCCGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 855
Cfr10I RCCGGY 2 cut(s) 164, 508
Cfr13I GGNCC 2 cut(s) 120, 167
Cfr42I CCGCGG 2 cut(s) 304, 310
Csp6I GTAC 3 cut(s) 162, 265, 298
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 2 cut(s) 500, 602
CviQI GTAC 3 cut(s) 162, 265, 298
DdeI CTNAG 1 cut(s) 449
DinI GGCGCC 1 cut(s) 854
DpnI GATC 3 cut(s) 393, 573, 585
DpnII GATC 3 cut(s) 391, 571, 583
DraI TTTAAA 1 cut(s) 552
DraIII CACNNNGTG 1 cut(s) 357
EaeI YGGCCR 5 cut(s) 37, 46, 218, 304, 471
EagI CGGCCG 2 cut(s) 218, 304
EciI GGCGGA 1 cut(s) 263
EclXI CGGCCG 2 cut(s) 218, 304
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 3 cut(s) 205, 477, 556
Eco47I GGWCC 1 cut(s) 167
Eco52I CGGCCG 2 cut(s) 218, 304
Eco57I CTGAAG 2 cut(s) 576, 678
Eco72I CACGTG 1 cut(s) 59
Eco88I CYCGRG 2 cut(s) 260, 557
EcoRII CCWGG 2 cut(s) 43, 848
EcoT14I CCWWGG 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 854
EheI GGCGCC 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 503, 605
FaiI YATR 9 cut(s) 147, 379, 405, 501, 603, 617, 629, 683, 698
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 499, 601
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 9 cut(s) 15, 239, 304, 307, 374, 423, 843, 846, 856
FokI GGATG 3 cut(s) 36, 254, 796
Fsp4HI GCNGC 9 cut(s) 15, 239, 304, 307, 374, 423, 843, 846, 856
FspBI CTAG 3 cut(s) 117, 693, 816
GlaI GCGC 1 cut(s) 854
GluI GCNGC 9 cut(s) 15, 239, 304, 307, 374, 423, 843, 846, 856
HaeII RGCGCY 1 cut(s) 856
HaeIII GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 473, 872
HapII CCGG 5 cut(s) 165, 171, 177, 233, 509
HhaI GCGC 1 cut(s) 855
Hin1I GRCGYC 1 cut(s) 853
Hin1II CATG 2 cut(s) 503, 605
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HinfI GANTC 4 cut(s) 95, 214, 435, 767
HpaII CCGG 5 cut(s) 165, 171, 177, 233, 509
HphI GGTGA 2 cut(s) 566, 776
Hpy188I TCNGA 7 cut(s) 210, 250, 452, 571, 595, 720, 783
Hpy188III TCNNGA 2 cut(s) 154, 439
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 78, 301, 820
HpyCH4III ACNGT 2 cut(s) 161, 738
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 7 cut(s) 403, 499, 619, 673, 704, 845, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 505
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 853
Hsp92II CATG 2 cut(s) 503, 605
HspAI GCGC 1 cut(s) 853
KasI GGCGCC 1 cut(s) 852
Ksp22I TGATCA 1 cut(s) 571
KspI CCGCGG 2 cut(s) 304, 310
Kzo9I GATC 3 cut(s) 391, 571, 583
LmnI GCTCC 5 cut(s) 82, 173, 179, 211, 235
Lsp1109I GCAGC 6 cut(s) 26, 225, 360, 434, 829, 857
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 117, 693, 816
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 54, 59, 685
MalI GATC 3 cut(s) 393, 573, 585
MbiI CCGCTC 1 cut(s) 77
MboI GATC 3 cut(s) 391, 571, 583
MboII GAAGA 6 cut(s) 223, 530, 533, 582, 635, 671
MfeI CAATTG 1 cut(s) 860
MflI RGATCY 1 cut(s) 583
MlsI TGGCCA 2 cut(s) 48, 473
MluCI AATT 6 cut(s) 82, 133, 339, 455, 639, 860
MluNI TGGCCA 2 cut(s) 48, 473
Mly113I GGCGCC 1 cut(s) 853
MlyI GAGTC 2 cut(s) 208, 444
MmeI TCCRAC 3 cut(s) 111, 123, 273
MnlI CCTC 6 cut(s) 82, 151, 269, 281, 310, 473
Mox20I TGGCCA 2 cut(s) 48, 473
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 2 cut(s) 48, 473
MseI TTAA 3 cut(s) 551, 633, 728
MslI CAYNNNNRTG 2 cut(s) 606, 673
Msp20I TGGCCA 2 cut(s) 48, 473
MspA1I CMGCKG 2 cut(s) 303, 309
MspI CCGG 5 cut(s) 165, 171, 177, 233, 509
MspR9I CCNGG 4 cut(s) 45, 171, 233, 850
MunI CAATTG 1 cut(s) 860
MvaI CCWGG 2 cut(s) 45, 850
MvnI CGCG 2 cut(s) 303, 309
MwoI GCNNNNNNNGC 2 cut(s) 45, 505
NarI GGCGCC 1 cut(s) 853
NciI CCSGG 2 cut(s) 171, 233
NdeII GATC 3 cut(s) 391, 571, 583
NheI GCTAGC 2 cut(s) 692, 815
NlaIII CATG 2 cut(s) 503, 605
NlaIV GGNNCC 5 cut(s) 169, 175, 207, 335, 854
NmeAIII GCCGAG 2 cut(s) 182, 196
NmuCI GTSAC 3 cut(s) 54, 59, 685
NotI GCGGCCGC 1 cut(s) 304
PaqCI CACCTGC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 95, 767
PfoI TCCNGGA 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 9 cut(s) 16, 240, 305, 308, 375, 424, 844, 847, 857
PleI GAGTC 2 cut(s) 208, 443
PluTI GGCGCC 1 cut(s) 856
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 208, 443
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 43, 848
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 2 cut(s) 43, 848
PspN4I GGNNCC 5 cut(s) 169, 175, 207, 335, 854
PspPI GGNCC 2 cut(s) 120, 167
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 163, 266, 299
RsaNI GTAC 3 cut(s) 162, 265, 298
RseI CAYNNNNRTG 2 cut(s) 606, 673
SacII CCGCGG 2 cut(s) 304, 310
SaqAI TTAA 3 cut(s) 551, 633, 728
SatI GCNGC 9 cut(s) 15, 239, 304, 307, 374, 423, 843, 846, 856
Sau3AI GATC 3 cut(s) 391, 571, 583
Sau96I GGNCC 2 cut(s) 120, 167
SchI GAGTC 2 cut(s) 208, 444
ScrFI CCNGG 4 cut(s) 45, 171, 233, 850
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 843
SfiI GGCCNNNNNGGCC 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 854
Sfr303I CCGCGG 2 cut(s) 304, 310
SgrBI CCGCGG 2 cut(s) 304, 310
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 606, 673
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 6 cut(s) 82, 133, 339, 455, 639, 860
SsiI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 506, 856
SspDI GGCGCC 1 cut(s) 852
SspMI CTAG 3 cut(s) 117, 693, 816
StyD4I CCNGG 4 cut(s) 43, 169, 231, 848
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 161, 738
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 390
TasI AATT 6 cut(s) 82, 133, 339, 455, 639, 860
TauI GCSGC 3 cut(s) 306, 309, 858
TfiI GAWTC 2 cut(s) 95, 767
Tru1I TTAA 3 cut(s) 551, 633, 728
Tru9I TTAA 3 cut(s) 551, 633, 728
TscAI CASTG 6 cut(s) 56, 481, 661, 680, 694, 778
TseFI GTSAC 3 cut(s) 54, 59, 685
TseI GCWGC 6 cut(s) 14, 238, 373, 422, 842, 845
Tsp45I GTSAC 3 cut(s) 54, 59, 685
TspDTI ATGAA 4 cut(s) 516, 552, 771, 807
TspRI CASTG 6 cut(s) 56, 481, 661, 680, 694, 778
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 639
XmaJI CCTAGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 117, 693, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.