Rh4DG438300

Chromosome segregation in meiosis protein 3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
64117848 .. 64120074
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG438300.1

Sequence Viewer

Length: 675 bp
ATGGAGAAGCCAGCAGCAACGGGATGCTACAAGTGTGGCCGACCTGGCCACTGGTCACGTGACTGCCCTTCCTCCGCCCCCAATTCCAACCCCGATTCCAACCCAAACCCTAACCCTAGGCCCGCCAATCCCAATTCCTCATCTTATGCTTTCAAGAACAGTACCGGCACCGGAGCCGGATCTTCGAAAGGGAAAAAGGTCTCGGCTCCGAAGACTCGGCCGAAGCTGACCCCGGAGCTGCTTCTTTCCGACGATGGCCTCGGGTACATCCTCCGCCATTTCCCTAAATCCTTCAAGTACCGCGGCCGCGGACACGAGGTTAGGGATTTGGGGAACCTAATTGGGTTGTACACAGAGTGGCACTCTCGTTTGCTTCCATATTACTCATTCGATCAGTTTGTGCATAAGGTGGAACAAGTGGCGGCCACGAAACGAGTCAAGATGTCTCTCAGAGAATTGAGAGAAAGAGTGGCCAGTGGAGGAGACCTAACAAAGTTGCATGAACCGCCAGTTATTGAAGAAGACATTCCAAATGATGAACACGAAACTTTGAACCCTGAGAGACCATCTGATGACCAGAAAGATCTATCTTCAGGGAACCATGATGATGATTTTATGCAGGAAGATATGCTTAACGAAATTTACAAGAAAGCCACTGAAGTATGTGTTATTTGA
Functional Annotation

Protein Analysis

224

Amino Acids

25.07

Weight (kDa)

6.71

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 8 - 24 2.5e-08 Zinc knuckle
Swi3 PF07962 75 - 156 1.1e-25 Replication Fork Protection Component Swi3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010919)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 2 cut(s) 303, 309
AciI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 422, 506
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 6 cut(s) 37, 46, 218, 304, 423, 471
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 576
AcvI CACGTG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 4 cut(s) 163, 266, 299, 350
AgsI TTSAA 4 cut(s) 154, 295, 518, 553
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 226, 238
AluI AGCT 2 cut(s) 226, 238
Alw26I GTCTC 4 cut(s) 205, 450, 477, 556
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 8 cut(s) 37, 46, 119, 218, 256, 304, 423, 471
ApeKI GCWGC 2 cut(s) 14, 238
ApoI RAATTY 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 525
AspA2I CCTAGG 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 260
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 2 cut(s) 48, 473
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 218, 528
BbvI GCAGC 2 cut(s) 26, 225
BccI CCATC 2 cut(s) 248, 574
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 4 cut(s) 205, 450, 477, 556
BfaI CTAG 1 cut(s) 117
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 583
BisI GCNGC 5 cut(s) 15, 239, 304, 307, 423
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 5 cut(s) 16, 240, 305, 308, 424
Bme1390I CCNGG 2 cut(s) 45, 233
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 5 cut(s) 169, 175, 207, 335, 599
BmrFI CCNGG 2 cut(s) 45, 233
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 218, 528
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu14I TTCGAA 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 59
BsaI GGTCTC 3 cut(s) 205, 477, 556
BsaJI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BsaWI WCCGGW 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 56, 474, 509
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BseGI GGATG 2 cut(s) 29, 267
BseMII CTCAG 2 cut(s) 463, 549
BseNI ACTGG 3 cut(s) 56, 474, 509
BseRI GAGGAG 1 cut(s) 495
BseX3I CGGCCG 2 cut(s) 218, 304
BseXI GCAGC 2 cut(s) 26, 225
Bsh1236I CGCG 2 cut(s) 303, 309
Bsh1285I CGRYCG 2 cut(s) 221, 307
BshFI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 425, 473
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 2 cut(s) 221, 307
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 4 cut(s) 165, 171, 177, 233
BsmAI GTCTC 4 cut(s) 205, 450, 477, 556
BsnI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 425, 473
Bso31I GGTCTC 3 cut(s) 205, 477, 556
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 185
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 179, 391, 583
BspACI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 422, 506
BspANI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 425, 473
BspCNI CTCAG 2 cut(s) 462, 550
BspFNI CGCG 2 cut(s) 303, 309
BspLI GGNNCC 5 cut(s) 169, 175, 207, 335, 599
BspPI GGATC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 3 cut(s) 205, 477, 556
BsrFI RCCGGY 1 cut(s) 164
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 56, 474, 509
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 5 cut(s) 116, 231, 259, 301, 307
BssMI GATC 3 cut(s) 179, 391, 583
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 348
BstBAI YACGTR 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 12, 123
BstDEI CTNAG 2 cut(s) 449, 558
BstDSI CCRYGG 2 cut(s) 301, 307
BstF5I GGATG 2 cut(s) 29, 267
BstFNI CGCG 2 cut(s) 303, 309
BstKTI GATC 3 cut(s) 182, 394, 586
BstMAI GTCTC 4 cut(s) 205, 450, 477, 556
BstMBI GATC 3 cut(s) 179, 391, 583
BstMCI CGRYCG 2 cut(s) 221, 307
BstMWI GCNNNNNNNGC 2 cut(s) 45, 505
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 43, 231
BstUI CGCG 2 cut(s) 303, 309
BstV1I GCAGC 2 cut(s) 26, 225
BstV2I GAAGAC 2 cut(s) 218, 528
BstX2I RGATCY 2 cut(s) 179, 583
BstYI RGATCY 2 cut(s) 179, 583
BstZI CGGCCG 2 cut(s) 218, 304
BsuRI GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 425, 473
BtgI CCRYGG 2 cut(s) 301, 307
BtsCI GGATG 2 cut(s) 29, 267
BtsIMutI CAGTG 3 cut(s) 49, 481, 654
Cac8I GCNNGC 2 cut(s) 12, 123
CciNI GCGGCCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 120
Cfr42I CCGCGG 2 cut(s) 304, 310
Csp6I GTAC 4 cut(s) 162, 265, 298, 349
CviAII CATG 2 cut(s) 500, 602
CviQI GTAC 4 cut(s) 162, 265, 298, 349
DdeI CTNAG 2 cut(s) 449, 558
DpnI GATC 3 cut(s) 181, 393, 585
DpnII GATC 3 cut(s) 179, 391, 583
DraIII CACNNNGTG 1 cut(s) 357
EaeI YGGCCR 6 cut(s) 37, 46, 218, 304, 423, 471
EagI CGGCCG 2 cut(s) 218, 304
EciI GGCGGA 2 cut(s) 64, 263
EclXI CGGCCG 2 cut(s) 218, 304
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 3 cut(s) 205, 477, 556
Eco52I CGGCCG 2 cut(s) 218, 304
Eco57I CTGAAG 1 cut(s) 576
Eco72I CACGTG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 503, 605
FaiI YATR 8 cut(s) 147, 379, 405, 501, 603, 617, 629, 664
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 2 cut(s) 499, 601
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 15, 239, 304, 307, 423
FokI GGATG 2 cut(s) 36, 254
Fsp4HI GCNGC 5 cut(s) 15, 239, 304, 307, 423
FspBI CTAG 1 cut(s) 117
GluI GCNGC 5 cut(s) 15, 239, 304, 307, 423
HaeIII GGCC 8 cut(s) 39, 48, 121, 220, 258, 306, 425, 473
HapII CCGG 4 cut(s) 165, 171, 177, 233
Hin1II CATG 2 cut(s) 503, 605
HinfI GANTC 3 cut(s) 95, 214, 435
HpaII CCGG 4 cut(s) 165, 171, 177, 233
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 4 cut(s) 210, 250, 452, 571
Hpy188III TCNNGA 2 cut(s) 154, 439
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 78, 301
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 403, 499, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 505
HpyF3I CTNAG 2 cut(s) 449, 558
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 503, 605
KspI CCGCGG 2 cut(s) 304, 310
Kzo9I GATC 3 cut(s) 179, 391, 583
LmnI GCTCC 3 cut(s) 173, 211, 235
Lsp1109I GCAGC 2 cut(s) 26, 225
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 54, 59
MalI GATC 3 cut(s) 181, 393, 585
MboI GATC 3 cut(s) 179, 391, 583
MboII GAAGA 6 cut(s) 174, 223, 530, 533, 582, 635
MflI RGATCY 2 cut(s) 179, 583
MlsI TGGCCA 2 cut(s) 48, 473
MluCI AATT 5 cut(s) 82, 133, 339, 455, 639
MluNI TGGCCA 2 cut(s) 48, 473
MlyI GAGTC 2 cut(s) 208, 444
MmeI TCCRAC 3 cut(s) 111, 123, 273
MnlI CCTC 6 cut(s) 82, 148, 269, 281, 310, 473
Mox20I TGGCCA 2 cut(s) 48, 473
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 2 cut(s) 48, 473
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 606
Msp20I TGGCCA 2 cut(s) 48, 473
MspA1I CMGCKG 2 cut(s) 303, 309
MspI CCGG 4 cut(s) 165, 171, 177, 233
MspR9I CCNGG 2 cut(s) 45, 233
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 303, 309
MwoI GCNNNNNNNGC 2 cut(s) 45, 505
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 179, 391, 583
NlaIII CATG 2 cut(s) 503, 605
NlaIV GGNNCC 5 cut(s) 169, 175, 207, 335, 599
NmeAIII GCCGAG 2 cut(s) 182, 196
NmuCI GTSAC 2 cut(s) 54, 59
NotI GCGGCCGC 1 cut(s) 304
NspV TTCGAA 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 5 cut(s) 16, 240, 305, 308, 424
PleI GAGTC 2 cut(s) 208, 443
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 208, 443
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 43
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 5 cut(s) 169, 175, 207, 335, 599
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 2 cut(s) 179, 583
RsaI GTAC 4 cut(s) 163, 266, 299, 350
RsaNI GTAC 4 cut(s) 162, 265, 298, 349
RseI CAYNNNNRTG 1 cut(s) 606
SacII CCGCGG 2 cut(s) 304, 310
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 5 cut(s) 15, 239, 304, 307, 423
Sau3AI GATC 3 cut(s) 179, 391, 583
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 208, 444
ScrFI CCNGG 2 cut(s) 45, 233
SetI ASST 9 cut(s) 46, 61, 201, 228, 240, 321, 339, 411, 489
SfaNI GCATC 1 cut(s) 14
SfiI GGCCNNNNNGGCC 1 cut(s) 45
Sfr303I CCGCGG 2 cut(s) 304, 310
SfuI TTCGAA 1 cut(s) 185
SgrBI CCGCGG 2 cut(s) 304, 310
SmiMI CAYNNNNRTG 1 cut(s) 606
Sse9I AATT 5 cut(s) 82, 133, 339, 455, 639
SsiI CCGC 9 cut(s) 75, 123, 274, 301, 303, 307, 309, 422, 506
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 43, 231
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 185, 390
TasI AATT 5 cut(s) 82, 133, 339, 455, 639
TatI WGTACW 1 cut(s) 348
TauI GCSGC 3 cut(s) 306, 309, 425
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 3 cut(s) 56, 481, 661
TseFI GTSAC 2 cut(s) 54, 59
TseI GCWGC 2 cut(s) 14, 238
Tsp45I GTSAC 2 cut(s) 54, 59
TspDTI ATGAA 2 cut(s) 516, 552
TspRI CASTG 3 cut(s) 56, 481, 661
XapI RAATTY 1 cut(s) 639
XmaJI CCTAGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.