pycom16g00680

Chromosome segregation in meiosis protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010919
Physical Location & Seq
Reverse (-)
411171 .. 412982
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00680.3

Sequence Viewer

Length: 750 bp
ATGGACAAGGCACCAGCAGCAACCGGCTGTTACAAGTGCGGCCGACCAGGCCACTGGTCACGTGACTGCCCTTCCTCCGCCCCTACCCCCAATTCTATCCCCGATCCTAATTCCAACCCTAACCCTAACCCCACAAATCTCAATTCCTCTTCTTATCCTTTCAAAAGCGGTACCGGTACTGGGATCGAAGGGAAGGCGAAGAAGGTGTCGGTTCCGAAGACTCGGCCGAAGCTGACGCTGGAGCTGCTTCTCTCAGACGATGGGCTCGGCTACGTCCTCCGCCACTTCCCTCGCGCCTTCAAGTATCGCGGCCGCGGACACGAGGTTAGAGATTTGGGGAATCTAATTGGTTTGTACACACAATGGCATTCGCGATTGCTACCATATTACTCATTTGATCAGTTTGTTCATAAGGTCGAACAAGTTGCCGCCACCAGACGAGTGAAGATGACTCTTAGGGATTTGAGAGAAAGAGTTGCAAGTGGAGGAGACCCGACAAAGTTGCGTGAAACAGCGGTCGAGGAAGGCGTTCCAAATGATCAAGAGGAAACCTTGAACCCTGAGGGACCAAGTGATCACCAGGGAGGTTCGTCTTCAGGGAACGATGATGTGGATGATACGCAGGAAGAGATGCTTCACGAAATCTACGAGAAAGCCACTCAGTGTCGGAACCGTCTCAGACGTTCCATGGTGAGATGGTTGCTCCTAGTGCTGGTATACCTGCATCAGAAAGTTTCCAGAAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0019219 GO:0019222 GO:0022402 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0042127 GO:0043111 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044773 GO:0044774 GO:0045005 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Swi3 zf-CCHC

Protein Analysis

250

Amino Acids

27.98

Weight (kDa)

9.21

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02820 AT3G02820
fragaria_vesca FvH4_4g36440 FvH4_4g36440
malus_domestica MD04G1110600.v1.1 MD13G1009200.v1.1 MD16G1007200.v1.1
prunus_persica Prupe.1G343500_v2.0.a1
pyrus_communis pycom13g00780 pycom16g00680
rosa_chinensis RchiOBHm_Chr4g0446201
rosa_laevigata RLG00000005683
rosa_multiflora Rmu_sc0002266.1_g000014
rosa_roxburghii Rroxscaffold_5G00386600
rosa_rugosa Rorug04G0368400
rosa_samantha Rh4AG430400 Rh4BG439800 Rh4CG457100 Rh4DG438300
rosa_wichuraiana Rw4G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 10, 170
AccI GTMKAC 1 cut(s) 717
AccII CGCG 4 cut(s) 294, 309, 315, 373
AciI CCGC 9 cut(s) 39, 78, 168, 280, 309, 313, 315, 429, 515
AclWI GGATC 2 cut(s) 98, 191
AcoI YGGCCR 3 cut(s) 40, 224, 310
AcuI CTGAAG 1 cut(s) 579
AcvI CACGTG 1 cut(s) 62
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 3 cut(s) 172, 178, 356
AfiI CCNNNNNNNGG 2 cut(s) 180, 712
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 3 cut(s) 163, 301, 556
AjnI CCWGG 2 cut(s) 46, 579
AluBI AGCT 2 cut(s) 232, 244
AluI AGCT 2 cut(s) 232, 244
Alw26I GTCTC 2 cut(s) 483, 680
AlwI GGATC 2 cut(s) 98, 191
AoxI GGCC 4 cut(s) 40, 49, 224, 310
ApeKI GCWGC 2 cut(s) 17, 244
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AsiGI ACCGGT 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 528
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 569, 703
AvaII GGWCC 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 561
BanI GGYRCC 2 cut(s) 10, 170
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 224, 585
BbvI GCAGC 2 cut(s) 29, 231
BccI CCATC 2 cut(s) 254, 690
BcgI CGANNNNNNTGC 4 cut(s) 407, 441, 484, 518
BciT130I CCWGG 2 cut(s) 48, 581
BclI TGATCA 3 cut(s) 397, 538, 574
BcoDI GTCTC 2 cut(s) 483, 680
BfaI CTAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 729
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 6 cut(s) 18, 40, 245, 310, 313, 429
BlsI GCNGC 6 cut(s) 19, 41, 246, 311, 314, 430
Bme1390I CCNGG 2 cut(s) 48, 581
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 5 cut(s) 12, 172, 213, 567, 671
BmrFI CCNGG 2 cut(s) 48, 581
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 621, 733
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 224, 585
BpmI CTGGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 313, 580, 687
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 712
Bse118I RCCGGY 2 cut(s) 23, 173
Bse1I ACTGG 2 cut(s) 59, 184
Bse21I CCTNAGG 1 cut(s) 561
BseBI CCWGG 2 cut(s) 48, 581
BseDI CCNNGG 3 cut(s) 313, 580, 687
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 2 cut(s) 180, 712
BseMII CTCAG 4 cut(s) 267, 552, 674, 691
BseNI ACTGG 2 cut(s) 59, 184
BseRI GAGGAG 1 cut(s) 501
BseX3I CGGCCG 3 cut(s) 40, 224, 310
BseXI GCAGC 2 cut(s) 29, 231
Bsh1236I CGCG 4 cut(s) 294, 309, 315, 373
Bsh1285I CGRYCG 4 cut(s) 43, 227, 313, 519
BshFI GGCC 4 cut(s) 42, 51, 226, 312
BshNI GGYRCC 2 cut(s) 10, 170
BshTI ACCGGT 1 cut(s) 173
BsiEI CGRYCG 4 cut(s) 43, 227, 313, 519
BsiSI CCGG 2 cut(s) 24, 174
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 2 cut(s) 180, 712
BsmAI GTCTC 2 cut(s) 483, 680
BsmBI CGTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 4 cut(s) 42, 51, 226, 312
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 103, 183, 397, 538, 574
Bsp19I CCATGG 1 cut(s) 687
Bsp68I TCGCGA 1 cut(s) 373
BspACI CCGC 9 cut(s) 39, 78, 168, 280, 309, 313, 315, 429, 515
BspANI GGCC 4 cut(s) 42, 51, 226, 312
BspCNI CTCAG 4 cut(s) 266, 553, 673, 690
BspFNI CGCG 4 cut(s) 294, 309, 315, 373
BspLI GGNNCC 5 cut(s) 12, 172, 213, 567, 671
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 2 cut(s) 98, 191
BspT107I GGYRCC 2 cut(s) 10, 170
BspTNI GGTCTC 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 23, 173
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 2 cut(s) 59, 184
BssAI RCCGGY 2 cut(s) 23, 173
BssECI CCNNGG 3 cut(s) 313, 580, 687
BssMI GATC 5 cut(s) 103, 183, 397, 538, 574
BssNAI GTATAC 1 cut(s) 718
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 687
Bst1107I GTATAC 1 cut(s) 718
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 48, 581
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 2 cut(s) 154, 621
BstAUI TGTACA 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 62
BstDEI CTNAG 5 cut(s) 253, 455, 561, 660, 677
BstDSI CCRYGG 2 cut(s) 313, 687
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 4 cut(s) 294, 309, 315, 373
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 106, 186, 400, 541, 577
BstMAI GTCTC 2 cut(s) 483, 680
BstMBI GATC 5 cut(s) 103, 183, 397, 538, 574
BstMCI CGRYCG 4 cut(s) 43, 227, 313, 519
BstMWI GCNNNNNNNGC 4 cut(s) 17, 48, 244, 709
BstNI CCWGG 2 cut(s) 48, 581
BstSCI CCNGG 2 cut(s) 46, 579
BstUI CGCG 4 cut(s) 294, 309, 315, 373
BstV1I GCAGC 2 cut(s) 29, 231
BstV2I GAAGAC 2 cut(s) 224, 585
BstXI CCANNNNNNTGG 1 cut(s) 54
BstZ17I GTATAC 1 cut(s) 718
BstZI CGGCCG 3 cut(s) 40, 224, 310
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 4 cut(s) 42, 51, 226, 312
BtgI CCRYGG 2 cut(s) 313, 687
BtsCI GGATG 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 52, 668
BtuMI TCGCGA 1 cut(s) 373
BveI ACCTGC 1 cut(s) 729
CciNI GCGGCCGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 23, 173
Cfr13I GGNCC 1 cut(s) 566
Cfr42I CCGCGG 1 cut(s) 316
CseI GACGC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 171, 177, 355
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 1 cut(s) 688
CviQI GTAC 3 cut(s) 171, 177, 355
DdeI CTNAG 5 cut(s) 253, 455, 561, 660, 677
DpnI GATC 5 cut(s) 105, 185, 399, 540, 576
DpnII GATC 5 cut(s) 103, 183, 397, 538, 574
DraIII CACNNNGTG 1 cut(s) 663
EaeI YGGCCR 3 cut(s) 40, 224, 310
EagI CGGCCG 3 cut(s) 40, 224, 310
Eam1104I CTCTTC 2 cut(s) 154, 621
EarI CTCTTC 2 cut(s) 154, 621
EciI GGCGGA 2 cut(s) 67, 269
EclXI CGGCCG 3 cut(s) 40, 224, 310
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 566
Eco52I CGGCCG 3 cut(s) 40, 224, 310
Eco57I CTGAAG 1 cut(s) 579
Eco72I CACGTG 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 561
EcoRII CCWGG 2 cut(s) 46, 579
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 1 cut(s) 691
FaiI YATR 4 cut(s) 385, 411, 689, 718
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 579
FatI CATG 1 cut(s) 687
FbaI TGATCA 3 cut(s) 397, 538, 574
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 6 cut(s) 18, 40, 245, 310, 313, 429
FokI GGATG 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 6 cut(s) 18, 40, 245, 310, 313, 429
FspBI CTAG 1 cut(s) 707
GlaI GCGC 1 cut(s) 295
GluI GCNGC 6 cut(s) 18, 40, 245, 310, 313, 429
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 4 cut(s) 42, 51, 226, 312
HapII CCGG 2 cut(s) 24, 174
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 691
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 220, 340, 451
HpaII CCGG 2 cut(s) 24, 174
HphI GGTGA 2 cut(s) 569, 703
Hpy166II GTNNAC 2 cut(s) 357, 718
Hpy188I TCNGA 5 cut(s) 216, 256, 669, 680, 729
Hpy188III TCNNGA 4 cut(s) 372, 542, 638, 738
Hpy8I GTNNAC 2 cut(s) 357, 718
HpyAV CCTTC 6 cut(s) 81, 182, 187, 196, 307, 518
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 3 cut(s) 61, 273, 682
HpyCH4V TGCA 2 cut(s) 479, 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 48, 244, 709
HpyF3I CTNAG 5 cut(s) 253, 455, 561, 660, 677
HpySE526I ACGT 3 cut(s) 61, 273, 682
Hsp92II CATG 1 cut(s) 691
HspAI GCGC 1 cut(s) 294
KpnI GGTACC 1 cut(s) 174
Ksp22I TGATCA 3 cut(s) 397, 538, 574
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 5 cut(s) 103, 183, 397, 538, 574
LmnI GCTCC 2 cut(s) 241, 708
Lsp1109I GCAGC 2 cut(s) 29, 231
LweI GCATC 2 cut(s) 621, 733
MaeI CTAG 1 cut(s) 707
MaeII ACGT 3 cut(s) 61, 273, 682
MaeIII GTNAC 3 cut(s) 29, 57, 62
MalI GATC 5 cut(s) 105, 185, 399, 540, 576
MboI GATC 5 cut(s) 103, 183, 397, 538, 574
MboII GAAGA 6 cut(s) 141, 211, 229, 457, 585, 638
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 91, 109, 142, 345
MlyI GAGTC 2 cut(s) 214, 445
MmeI TCCRAC 2 cut(s) 138, 647
MroXI GAANNNNTTC 1 cut(s) 528
MspA1I CMGCKG 2 cut(s) 315, 515
MspI CCGG 2 cut(s) 24, 174
MspR9I CCNGG 2 cut(s) 48, 581
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 48, 581
MvnI CGCG 4 cut(s) 294, 309, 315, 373
MwoI GCNNNNNNNGC 4 cut(s) 17, 48, 244, 709
NcoI CCATGG 1 cut(s) 687
NdeII GATC 5 cut(s) 103, 183, 397, 538, 574
NlaIII CATG 1 cut(s) 691
NlaIV GGNNCC 5 cut(s) 12, 172, 213, 567, 671
NmeAIII GCCGAG 2 cut(s) 202, 246
NmuCI GTSAC 2 cut(s) 57, 62
NotI GCGGCCGC 1 cut(s) 310
NruI TCGCGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 525, 645
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 340
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 6 cut(s) 19, 41, 246, 311, 314, 430
PleI GAGTC 2 cut(s) 214, 445
PmaCI CACGTG 1 cut(s) 62
PmlI CACGTG 1 cut(s) 62
PpsI GAGTC 2 cut(s) 214, 445
Ppu21I YACGTR 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 46, 579
PspCI CACGTG 1 cut(s) 62
PspGI CCWGG 2 cut(s) 46, 579
PspN4I GGNNCC 5 cut(s) 12, 172, 213, 567, 671
PspPI GGNCC 1 cut(s) 566
RruI TCGCGA 1 cut(s) 373
RsaI GTAC 3 cut(s) 172, 178, 356
RsaNI GTAC 3 cut(s) 171, 177, 355
SacII CCGCGG 1 cut(s) 316
SatI GCNGC 6 cut(s) 18, 40, 245, 310, 313, 429
Sau3AI GATC 5 cut(s) 103, 183, 397, 538, 574
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 2 cut(s) 214, 445
ScrFI CCNGG 2 cut(s) 48, 581
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 2 cut(s) 621, 733
SfiI GGCCNNNNNGGCC 1 cut(s) 48
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 1 cut(s) 566
Sse9I AATT 4 cut(s) 91, 109, 142, 345
SsiI CCGC 9 cut(s) 39, 78, 168, 280, 309, 313, 315, 429, 515
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 46, 579
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 3 cut(s) 64, 276, 685
TaqI TCGA 3 cut(s) 186, 417, 519
TasI AATT 4 cut(s) 91, 109, 142, 345
TatI WGTACW 1 cut(s) 354
TauI GCSGC 4 cut(s) 42, 312, 315, 431
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 2 cut(s) 59, 668
TseFI GTSAC 2 cut(s) 57, 62
TseI GCWGC 2 cut(s) 17, 244
Tsp45I GTSAC 2 cut(s) 57, 62
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 2 cut(s) 59, 668
VpaK11BI GGWCC 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.