FvH4_5g00720

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015615
Physical Location & Seq
Reverse (-)
409956 .. 413072
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00720.t1

Sequence Viewer

Length: 1122 bp
ATGCAAGGGGGAAGAGGTGGCGGGCGTGGTGGTGGTGGTGGTAGGGGTCCTTTTGATTTCAATGATCCTTTTGGTGGTTTCGGTGGATTTGGGGGGCAGGGGAGTTTGATGCCTGGCTTCTTTGGAGGGAGGGATCCGTTTGATGATCCTTTCTTTACTCGCCCGTTTGGAGGGATTTTTGACTCAGGATTTCCGGGTATGGGTGGCAGCATGCTTCCTGGTATGGGTGGCGGCATGTTTCCTGGAATGGGTGGCGGAATGTTTCCTGGAATGGGTGGCGGTATGTTTCCTGGAATGGGTCCTGGTATGAATCGAGGTATGTTCTCAGGTATGGGGCCAAGTGGGTTTATTGAGAATCAGGCTCAGGCTGCAGTGCCGCAGACATCTAGGGGTCCAATCATTGAGGAGCTGGACTCTGATCATGAAGAAGAAGAGGCTGGTAATGTGAAAAAGGAAAATCCAAGAAAACGTGGTGGGCCAAGCAACGATCCTTATATTGAGCACCCAGATGATGTAGATGAAGAGACGAAGAGCAAGCATGTGGTGTCTAGGGACAACTTTGATCACTTTGGTGTTATGCAAACACGGCCTCAAGCTCATAGCTACACATTTCAGAGCTCCAGTGTCTCTTATGGTGGTACTAATGGTGCATATTATACTTCTTCCAAGGCAAGAAGGATGGGGAGTGATGGGGTTACTTTTGAAGAAAGCAAGGAAGCAGATACTTCTTCTGGGAAAGCCACACACAGAATATCTAAGGGGCTCCACAATAAGGGCCATTCAATTGCTAGGAAGCTCAAAACAGATGGTAAAGTTGATACAATGCAGACTTTGCATAACCTTAATGAAGATGAGCTTTCTGGTTTTGAACAAGCATGGAAGGGAGCTGCTCAAAAGCATATGCCTGGATTGAATGATCAGTTTGCGAGTTATGAAACTCTTGGAGCTGGTGGCAGCAGACATGGACAGGCCGGTCGGGGAGGTACTCTTCCTAGCAACGAACTTCTACAGAACACTGGAAACATGATAGCAGGTACTCTAGGTGAAGCAGTATCTTCTCGTAATATGAGAGTAGATGGTAGAGACAGGAGTAATTCTTCCCGTGGGAGAGCCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

374

Amino Acids

39.3

Weight (kDa)

6.27

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 150 - 295 3.1e-21 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 972
Acc36I ACCTGC 1 cut(s) 1022
AciI CCGC 5 cut(s) 21, 231, 255, 279, 377
AclWI GGATC 5 cut(s) 59, 128, 140, 141, 482
AfaI GTAC 3 cut(s) 640, 985, 1036
AfiI CCNNNNNNNGG 8 cut(s) 74, 170, 200, 224, 248, 272, 296, 772
AgsI TTSAA 5 cut(s) 61, 704, 783, 869, 913
AjnI CCWGG 7 cut(s) 112, 217, 241, 265, 289, 301, 904
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 8 cut(s) 409, 596, 603, 618, 796, 856, 887, 947
AluI AGCT 8 cut(s) 409, 596, 603, 618, 796, 856, 887, 947
Alw21I GWGCWC 2 cut(s) 504, 620
Alw26I GTCTC 3 cut(s) 518, 631, 1077
AlwI GGATC 5 cut(s) 59, 128, 140, 141, 482
AoxI GGCC 5 cut(s) 335, 476, 587, 775, 969
ApeKI GCWGC 4 cut(s) 207, 368, 887, 954
AspS9I GGNCC 6 cut(s) 47, 299, 335, 392, 476, 775
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 1055
AvaII GGWCC 3 cut(s) 47, 299, 392
BamHI GGATCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 620, 765
Bbv12I GWGCWC 2 cut(s) 504, 620
BbvI GCAGC 4 cut(s) 219, 355, 874, 966
BccI CCATC 4 cut(s) 673, 683, 800, 1070
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 7 cut(s) 114, 219, 243, 267, 291, 303, 906
BclI TGATCA 3 cut(s) 418, 562, 916
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 518, 631, 1077
BfaI CTAG 5 cut(s) 387, 549, 789, 993, 1040
BfmI CTRYAG 2 cut(s) 369, 1007
BfuAI ACCTGC 1 cut(s) 1022
BisI GCNGC 6 cut(s) 208, 232, 369, 377, 888, 955
BlsI GCNGC 6 cut(s) 209, 233, 370, 378, 889, 956
Bme1390I CCNGG 8 cut(s) 114, 195, 219, 243, 267, 291, 303, 906
Bme18I GGWCC 3 cut(s) 47, 299, 392
BmgT120I GGNCC 6 cut(s) 47, 299, 335, 392, 476, 775
BmiI GGNNCC 6 cut(s) 48, 135, 300, 336, 393, 764
BmrFI CCNGG 8 cut(s) 114, 195, 219, 243, 267, 291, 303, 906
BmsI GCATC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 398, 430
BpmI CTGGAG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 666, 1102
Bsc4I CCNNNNNNNGG 8 cut(s) 74, 170, 200, 224, 248, 272, 296, 772
Bse118I RCCGGY 1 cut(s) 971
Bse1I ACTGG 2 cut(s) 621, 1021
BseBI CCWGG 7 cut(s) 114, 219, 243, 267, 291, 303, 906
BseDI CCNNGG 2 cut(s) 666, 1102
BseGI GGATG 1 cut(s) 684
BseLI CCNNNNNNNGG 8 cut(s) 74, 170, 200, 224, 248, 272, 296, 772
BseMII CTCAG 3 cut(s) 198, 339, 377
BseNI ACTGG 2 cut(s) 621, 1021
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 4 cut(s) 219, 355, 874, 966
Bsh1285I CGRYCG 1 cut(s) 976
BshFI GGCC 5 cut(s) 337, 478, 589, 777, 971
BsiEI CGRYCG 1 cut(s) 976
BsiHKAI GWGCWC 2 cut(s) 504, 620
BsiSI CCGG 2 cut(s) 194, 972
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 8 cut(s) 74, 170, 200, 224, 248, 272, 296, 772
BsmAI GTCTC 3 cut(s) 518, 631, 1077
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 5 cut(s) 337, 478, 589, 777, 971
Bsp1286I GDGCHC 3 cut(s) 504, 620, 765
Bsp143I GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
BspACI CCGC 5 cut(s) 21, 231, 255, 279, 377
BspANI GGCC 5 cut(s) 337, 478, 589, 777, 971
BspCNI CTCAG 3 cut(s) 197, 338, 376
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 6 cut(s) 48, 135, 300, 336, 393, 764
BspMAI CTGCAG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 1022
BspPI GGATC 5 cut(s) 59, 128, 140, 141, 482
BspQI GCTCTTC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 971
BsrI ACTGG 2 cut(s) 621, 1021
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 2 cut(s) 666, 1102
BssMI GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
BssT1I CCWWGG 1 cut(s) 666
Bst2UI CCWGG 7 cut(s) 114, 219, 243, 267, 291, 303, 906
Bst6I CTCTTC 5 cut(s) 7, 426, 516, 524, 993
BstAPI GCANNNNNTGC 1 cut(s) 832
BstC8I GCNNGC 3 cut(s) 23, 212, 536
BstDEI CTNAG 4 cut(s) 184, 325, 363, 756
BstDSI CCRYGG 1 cut(s) 1102
BstF5I GGATG 1 cut(s) 684
BstKTI GATC 7 cut(s) 67, 136, 148, 421, 490, 565, 919
BstMAI GTCTC 3 cut(s) 518, 631, 1077
BstMBI GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
BstMCI CGRYCG 1 cut(s) 976
BstMWI GCNNNNNNNGC 3 cut(s) 368, 586, 832
BstNI CCWGG 7 cut(s) 114, 219, 243, 267, 291, 303, 906
BstNSI RCATGY 3 cut(s) 214, 238, 542
BstSCI CCNGG 8 cut(s) 112, 193, 217, 241, 265, 289, 301, 904
BstSFI CTRYAG 2 cut(s) 369, 1007
BstV1I GCAGC 4 cut(s) 219, 355, 874, 966
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 5 cut(s) 337, 478, 589, 777, 971
BtgI CCRYGG 1 cut(s) 1102
BtsCI GGATG 1 cut(s) 684
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 378, 628, 1014
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 3 cut(s) 23, 212, 536
CciI TCATGA 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 6 cut(s) 47, 299, 335, 392, 476, 775
Csp6I GTAC 3 cut(s) 639, 984, 1035
CviAII CATG 7 cut(s) 211, 235, 422, 539, 876, 962, 1024
CviQI GTAC 3 cut(s) 639, 984, 1035
DdeI CTNAG 4 cut(s) 184, 325, 363, 756
DpnI GATC 7 cut(s) 66, 135, 147, 420, 489, 564, 918
DpnII GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
DrdI GACNNNNNNGTC 1 cut(s) 972
DseDI GACNNNNNNGTC 1 cut(s) 972
Eam1104I CTCTTC 5 cut(s) 7, 426, 516, 524, 993
EarI CTCTTC 5 cut(s) 7, 426, 516, 524, 993
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 666
Eco24I GRGCYC 2 cut(s) 620, 765
Eco47I GGWCC 3 cut(s) 47, 299, 392
Eco53kI GAGCTC 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 618
EcoO109I RGGNCCY 2 cut(s) 47, 299
EcoRII CCWGG 7 cut(s) 112, 217, 241, 265, 289, 301, 904
EcoT14I CCWWGG 1 cut(s) 666
EcoT38I GRGCYC 2 cut(s) 620, 765
ErhI CCWWGG 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 7 cut(s) 214, 238, 425, 542, 879, 965, 1027
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 1 cut(s) 566
FatI CATG 7 cut(s) 210, 234, 421, 538, 875, 961, 1023
FauI CCCGC 1 cut(s) 14
FauNDI CATATG 1 cut(s) 900
FbaI TGATCA 3 cut(s) 418, 562, 916
Fnu4HI GCNGC 6 cut(s) 208, 232, 369, 377, 888, 955
FokI GGATG 1 cut(s) 691
FriOI GRGCYC 2 cut(s) 620, 765
Fsp4HI GCNGC 6 cut(s) 208, 232, 369, 377, 888, 955
FspBI CTAG 5 cut(s) 387, 549, 789, 993, 1040
GluI GCNGC 6 cut(s) 208, 232, 369, 377, 888, 955
GsuI CTGGAG 1 cut(s) 604
HaeIII GGCC 5 cut(s) 337, 478, 589, 777, 971
HapII CCGG 2 cut(s) 194, 972
Hin1II CATG 7 cut(s) 214, 238, 425, 542, 879, 965, 1027
HinfI GANTC 4 cut(s) 182, 310, 355, 413
HpaII CCGG 2 cut(s) 194, 972
HphI GGTGA 1 cut(s) 1055
Hpy188I TCNGA 2 cut(s) 418, 615
Hpy188III TCNNGA 2 cut(s) 186, 422
HpyAV CCTTC 2 cut(s) 669, 874
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 6 cut(s) 4, 371, 580, 650, 826, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 586, 832
HpyF3I CTNAG 4 cut(s) 184, 325, 363, 756
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 7 cut(s) 214, 238, 425, 542, 879, 965, 1027
Ksp22I TGATCA 3 cut(s) 418, 562, 916
Kzo9I GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 5 cut(s) 406, 623, 768, 884, 944
Lsp1109I GCAGC 4 cut(s) 219, 355, 874, 966
LweI GCATC 1 cut(s) 99
MaeI CTAG 5 cut(s) 387, 549, 789, 993, 1040
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 1 cut(s) 694
MalI GATC 7 cut(s) 66, 135, 147, 420, 489, 564, 918
MboI GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 504, 620, 765
MluCI AATT 2 cut(s) 783, 1093
MlyI GAGTC 2 cut(s) 176, 407
MnlI CCTC 9 cut(s) 8, 119, 123, 164, 308, 397, 427, 600, 974
MseI TTAA 2 cut(s) 843, 1120
MslI CAYNNNNRTG 2 cut(s) 507, 570
MspI CCGG 2 cut(s) 194, 972
MspR9I CCNGG 8 cut(s) 114, 195, 219, 243, 267, 291, 303, 906
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 7 cut(s) 114, 219, 243, 267, 291, 303, 906
MwoI GCNNNNNNNGC 3 cut(s) 368, 586, 832
NciI CCSGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 900
NdeII GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
NlaIII CATG 7 cut(s) 214, 238, 425, 542, 879, 965, 1027
NlaIV GGNNCC 6 cut(s) 48, 135, 300, 336, 393, 764
NspI RCATGY 3 cut(s) 214, 238, 542
OliI CACNNNNGTG 1 cut(s) 570
PaeI GCATGC 1 cut(s) 214
PagI TCATGA 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 524
PfeI GAWTC 2 cut(s) 310, 355
PfoI TCCNGGA 3 cut(s) 241, 265, 289
PkrI GCNGC 6 cut(s) 209, 233, 370, 378, 889, 956
PleI GAGTC 2 cut(s) 176, 407
PpsI GAGTC 2 cut(s) 176, 407
PpuMI RGGWCCY 2 cut(s) 47, 299
Psp124BI GAGCTC 1 cut(s) 620
Psp5II RGGWCCY 2 cut(s) 47, 299
Psp6I CCWGG 7 cut(s) 112, 217, 241, 265, 289, 301, 904
PspGI CCWGG 7 cut(s) 112, 217, 241, 265, 289, 301, 904
PspN4I GGNNCC 6 cut(s) 48, 135, 300, 336, 393, 764
PspPI GGNCC 6 cut(s) 47, 299, 335, 392, 476, 775
PspPPI RGGWCCY 2 cut(s) 47, 299
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 3 cut(s) 640, 985, 1036
RsaNI GTAC 3 cut(s) 639, 984, 1035
RseI CAYNNNNRTG 2 cut(s) 507, 570
SacI GAGCTC 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 843, 1120
SatI GCNGC 6 cut(s) 208, 232, 369, 377, 888, 955
Sau3AI GATC 7 cut(s) 64, 133, 145, 418, 487, 562, 916
Sau96I GGNCC 6 cut(s) 47, 299, 335, 392, 476, 775
SchI GAGTC 2 cut(s) 176, 407
ScrFI CCNGG 8 cut(s) 114, 195, 219, 243, 267, 291, 303, 906
SduI GDGCHC 3 cut(s) 504, 620, 765
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 2 cut(s) 369, 1007
SinI GGWCC 3 cut(s) 47, 299, 392
SmiMI CAYNNNNRTG 2 cut(s) 507, 570
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 214
Sse9I AATT 2 cut(s) 783, 1093
SsiI CCGC 5 cut(s) 21, 231, 255, 279, 377
SspMI CTAG 5 cut(s) 387, 549, 789, 993, 1040
SstI GAGCTC 1 cut(s) 620
StyD4I CCNGG 8 cut(s) 112, 193, 217, 241, 265, 289, 301, 904
StyI CCWWGG 1 cut(s) 666
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 783, 1093
TauI GCSGC 2 cut(s) 234, 379
TfiI GAWTC 2 cut(s) 310, 355
Tru1I TTAA 2 cut(s) 843, 1120
Tru9I TTAA 2 cut(s) 843, 1120
TscAI CASTG 3 cut(s) 378, 628, 1021
TseI GCWGC 4 cut(s) 207, 368, 887, 954
TspDTI ATGAA 5 cut(s) 323, 438, 534, 861, 948
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 3 cut(s) 378, 628, 1021
VpaK11BI GGWCC 3 cut(s) 47, 299, 392
XceI RCATGY 3 cut(s) 214, 238, 542
XspI CTAG 5 cut(s) 387, 549, 789, 993, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.