Rh7BG193200

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015615
Physical Location & Seq
Forward (+)
15758608 .. 15761685
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG193200.1

Sequence Viewer

Length: 894 bp
ATGCAAGGGGGAAGAGGTGGAGGGCCTGGTGGCAGGGGTCCTTTTGATTTCAATGATCCTTTTGCTGGTTTTGGTGGATTTGGGGGTCAGGGGAGTTTGATGTCTAACGTCTTCGGAGGGAGGGATCCATTTGATGACCCTTTCTTTACTCGCCCGTTTGGAGGGATATTTGACTCGGGTTTTCCGGGTATGGGTGGAGGAATGTTTCCTGGAAGGGGTGGCGGTATGTTTCCTGGAATGGGTGGCGGTATGTTTCCTGCAATGGGTGGCGGTATGTTTCCTGCAATGGGTCCTGGTATGAATGGAGATATTTTTTCAGGTATGCGGCCAACTGGGTTCATTGAGAATCACGATCAGGCTCCAGAGCGGCAGAAATCTAGGGGCCCGATCATTGAGGAACTAGACTCTGATCATGAAGAAGAAGAGGCTAATAATGAGAAAAAGGAAAATCCGCGAAAGCGTGTTGGGCCAAGCAATGATCCTTATGTTGAGCACCCTGATGATGTAGTTGAAGAGAAGAAGAGCAAGCATTTGCAATCTAGGGACAACTACAGTCAGTTTGGTGCTATGCAATCACAGCCTCAAGCTCATAGCTACACGTTTCAGAGCTCCAGTGTCACTTATGGTGGTGGTAATGGTGCATACTATACATCTTCCAAGACAAGAAGGATGGGGAGTGATGGGGTTGCTTTTGAAGAAAGTAAGGAAGCTGATACTTCTTCTGGGAAAGCCACACACAGGGTATCTAAGGGGCTCCACAATAAGGGCCATTCAATTACTAGGAAGCTCAAAGATGGTAATGCAGATACAATGCAGACTTTGCATAACCTTAATGAAGGTATGTTATTTATATTCAACTCTGTCTGTGCCGGAAGGTTTATGGGAGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

297

Amino Acids

31.77

Weight (kDa)

6.0

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 142 - 280 1.6e-17 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 1 cut(s) 454
AciI CCGC 6 cut(s) 222, 246, 270, 325, 367, 452
AclWI GGATC 4 cut(s) 50, 119, 132, 473
AcoI YGGCCR 1 cut(s) 326
AfiI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 5 cut(s) 52, 512, 695, 774, 856
AjnI CCWGG 4 cut(s) 25, 208, 232, 292
AluBI AGCT 5 cut(s) 587, 594, 609, 710, 787
AluI AGCT 5 cut(s) 587, 594, 609, 710, 787
Alw21I GWGCWC 2 cut(s) 495, 611
AlwI GGATC 4 cut(s) 50, 119, 132, 473
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 23, 326, 382, 467, 766
ApaI GGGCCC 1 cut(s) 386
AspS9I GGNCC 7 cut(s) 23, 38, 290, 382, 383, 467, 766
AsuC2I CCSGG 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 2 cut(s) 38, 290
BaeGI GKGCMC 1 cut(s) 386
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 3 cut(s) 386, 611, 756
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 2 cut(s) 495, 611
BccI CCATC 3 cut(s) 664, 674, 788
BciT130I CCWGG 4 cut(s) 27, 210, 234, 294
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 4 cut(s) 378, 401, 540, 780
BfmI CTRYAG 1 cut(s) 550
BisI GCNGC 2 cut(s) 326, 368
BlsI GCNGC 2 cut(s) 327, 369
Bme1390I CCNGG 5 cut(s) 27, 186, 210, 234, 294
Bme18I GGWCC 2 cut(s) 38, 290
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 7 cut(s) 23, 38, 290, 382, 383, 467, 766
BmiI GGNNCC 7 cut(s) 39, 126, 291, 360, 383, 384, 755
BmrFI CCNGG 5 cut(s) 27, 186, 210, 234, 294
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 345, 595
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
Bse1I ACTGG 2 cut(s) 337, 612
Bse3DI GCAATG 3 cut(s) 267, 291, 481
BseBI CCWGG 4 cut(s) 27, 210, 234, 294
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
BseMI GCAATG 3 cut(s) 267, 291, 481
BseNI ACTGG 2 cut(s) 337, 612
BseSI GKGCMC 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 5 cut(s) 25, 328, 384, 469, 768
BsiHKAI GWGCWC 2 cut(s) 495, 611
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 185, 870
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 5 cut(s) 25, 328, 384, 469, 768
BsoBI CYCGRG 1 cut(s) 175
Bsp120I GGGCCC 1 cut(s) 382
Bsp1286I GDGCHC 4 cut(s) 386, 495, 611, 756
Bsp143I GATC 6 cut(s) 55, 124, 352, 387, 409, 478
BspACI CCGC 6 cut(s) 222, 246, 270, 325, 367, 452
BspANI GGCC 5 cut(s) 25, 328, 384, 469, 768
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 7 cut(s) 39, 126, 291, 360, 383, 384, 755
BspPI GGATC 4 cut(s) 50, 119, 132, 473
BspQI GCTCTTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 3 cut(s) 267, 291, 481
BsrI ACTGG 2 cut(s) 337, 612
BssMI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
Bst2UI CCWGG 4 cut(s) 27, 210, 234, 294
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 4 cut(s) 7, 417, 507, 515
BstAPI GCANNNNNTGC 1 cut(s) 820
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 1 cut(s) 747
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 6 cut(s) 58, 127, 355, 390, 412, 481
BstMBI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
BstMWI GCNNNNNNNGC 3 cut(s) 466, 577, 820
BstNI CCWGG 4 cut(s) 27, 210, 234, 294
BstSCI CCNGG 5 cut(s) 25, 184, 208, 232, 292
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 386
BstUI CGCG 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 5 cut(s) 25, 328, 384, 469, 768
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 527
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 7 cut(s) 23, 38, 290, 382, 383, 467, 766
CviAII CATG 1 cut(s) 413
DdeI CTNAG 1 cut(s) 747
DpnI GATC 6 cut(s) 57, 126, 354, 389, 411, 480
DpnII GATC 6 cut(s) 55, 124, 352, 387, 409, 478
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 7, 417, 507, 515
EarI CTCTTC 4 cut(s) 7, 417, 507, 515
Ecl136II GAGCTC 1 cut(s) 609
Eco24I GRGCYC 3 cut(s) 386, 611, 756
Eco47I GGWCC 2 cut(s) 38, 290
Eco53kI GAGCTC 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 609
EcoO109I RGGNCCY 4 cut(s) 23, 38, 290, 382
EcoRII CCWGG 4 cut(s) 25, 208, 232, 292
EcoT38I GRGCYC 3 cut(s) 386, 611, 756
FaeI CATG 1 cut(s) 416
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 326, 368
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 3 cut(s) 386, 611, 756
Fsp4HI GCNGC 2 cut(s) 326, 368
FspBI CTAG 4 cut(s) 378, 401, 540, 780
GluI GCNGC 2 cut(s) 326, 368
GsuI CTGGAG 2 cut(s) 345, 595
HaeIII GGCC 5 cut(s) 25, 328, 384, 469, 768
HapII CCGG 2 cut(s) 185, 870
Hin1II CATG 1 cut(s) 416
HinfI GANTC 3 cut(s) 173, 346, 404
HpaII CCGG 2 cut(s) 185, 870
Hpy188I TCNGA 3 cut(s) 116, 409, 606
Hpy188III TCNNGA 3 cut(s) 350, 362, 413
HpyAV CCTTC 4 cut(s) 207, 660, 830, 867
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 2 cut(s) 108, 599
HpyCH4V TGCA 9 cut(s) 4, 260, 284, 535, 571, 641, 803, 814, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 466, 577, 820
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 2 cut(s) 108, 599
Hsp92II CATG 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 6 cut(s) 55, 124, 352, 387, 409, 478
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 3 cut(s) 364, 614, 759
MaeI CTAG 4 cut(s) 378, 401, 540, 780
MaeII ACGT 2 cut(s) 108, 599
MaeIII GTNAC 1 cut(s) 616
MalI GATC 6 cut(s) 57, 126, 354, 389, 411, 480
MbiI CCGCTC 1 cut(s) 367
MboI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 386, 495, 611, 756
MluCI AATT 1 cut(s) 774
MlyI GAGTC 2 cut(s) 167, 398
MnlI CCTC 9 cut(s) 8, 14, 110, 114, 155, 191, 388, 418, 591
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 1 cut(s) 498
MspI CCGG 2 cut(s) 185, 870
MspR9I CCNGG 5 cut(s) 27, 186, 210, 234, 294
MvaI CCWGG 4 cut(s) 27, 210, 234, 294
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 466, 577, 820
NciI CCSGG 1 cut(s) 186
NdeII GATC 6 cut(s) 55, 124, 352, 387, 409, 478
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 7 cut(s) 39, 126, 291, 360, 383, 384, 755
NmuCI GTSAC 1 cut(s) 616
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 346
PfoI TCCNGGA 2 cut(s) 208, 232
PkrI GCNGC 2 cut(s) 327, 369
PleI GAGTC 2 cut(s) 167, 398
PpsI GAGTC 2 cut(s) 167, 398
PpuMI RGGWCCY 2 cut(s) 38, 290
Psp124BI GAGCTC 1 cut(s) 611
Psp5II RGGWCCY 2 cut(s) 38, 290
Psp6I CCWGG 4 cut(s) 25, 208, 232, 292
PspGI CCWGG 4 cut(s) 25, 208, 232, 292
PspN4I GGNNCC 7 cut(s) 39, 126, 291, 360, 383, 384, 755
PspOMI GGGCCC 1 cut(s) 382
PspPI GGNCC 7 cut(s) 23, 38, 290, 382, 383, 467, 766
PspPPI RGGWCCY 2 cut(s) 38, 290
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 831
SatI GCNGC 2 cut(s) 326, 368
Sau3AI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
Sau96I GGNCC 7 cut(s) 23, 38, 290, 382, 383, 467, 766
SchI GAGTC 2 cut(s) 167, 398
ScrFI CCNGG 5 cut(s) 27, 186, 210, 234, 294
SduI GDGCHC 4 cut(s) 386, 495, 611, 756
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 2 cut(s) 38, 290
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 1 cut(s) 774
SsiI CCGC 6 cut(s) 222, 246, 270, 325, 367, 452
SspMI CTAG 4 cut(s) 378, 401, 540, 780
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 5 cut(s) 25, 184, 208, 232, 292
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 2 cut(s) 111, 602
TasI AATT 1 cut(s) 774
TauI GCSGC 2 cut(s) 328, 370
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 616
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 314, 328, 429, 849
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 2 cut(s) 38, 290
XspI CTAG 4 cut(s) 378, 401, 540, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.