Rmu_co8397869.1_g000001

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8397869.1
OG0015615
Physical Location & Seq
Forward (+)
78 .. 1167
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8397869.1_g000001.1.cds

Sequence Viewer

Length: 438 bp
atgcaatcacagcctcaagctcatagctacacatttcagagctccagtgtcacttatggcggtggtaatggtgcatactatacatcttccaagacaagaaggatggggagtgatggggttgcttttgaagaaagcaaagaagctgatacttcttctgggaaagcgacacacagggtatctaaggggctccacaataagggccattcaattactaggaagctcaaagagggtaaggtagatacaatgcagactttgcataaccttaatgaagatgagctttccggttttgaacatgcatggaagggagctgctcaaaaacatatgcctggattgaatgatcagtttgctagttatgaaagtctagtacccggcatggtagtgaatgatgttaattgtgagactgcatttgtctatgtgtatgtagctattgcttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

145

Amino Acids

15.82

Weight (kDa)

6.64

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 4 cut(s) 128, 207, 290, 334
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 8 cut(s) 20, 27, 42, 143, 220, 277, 308, 425
AluI AGCT 8 cut(s) 20, 27, 42, 143, 220, 277, 308, 425
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 369
BanII GRGCYC 2 cut(s) 44, 189
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 97, 107
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 3 cut(s) 213, 348, 362
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 327, 369
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 327, 369
BpmI CTGGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 282, 369
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 44, 189
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 10, 253
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 325, 367
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 293, 297, 373
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 2 cut(s) 44, 189
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 44, 189
FaeI CATG 3 cut(s) 296, 300, 376
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 3 cut(s) 292, 296, 372
FauNDI CATATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 2 cut(s) 44, 189
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 3 cut(s) 213, 348, 362
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 282, 369
Hin1II CATG 3 cut(s) 296, 300, 376
HpaII CCGG 2 cut(s) 282, 369
Hpy188I TCNGA 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 93, 295
HpyCH4V TGCA 6 cut(s) 4, 74, 247, 256, 296, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 253
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 3 cut(s) 296, 300, 376
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 3 cut(s) 47, 192, 305
LpnPI CCDG 7 cut(s) 58, 141, 157, 295, 312, 339, 382
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 3 cut(s) 213, 348, 362
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 4 cut(s) 78, 140, 144, 281
MhlI GDGCHC 2 cut(s) 44, 189
MluCI AATT 2 cut(s) 207, 391
MnlI CCTC 2 cut(s) 24, 220
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 2 cut(s) 264, 390
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 2 cut(s) 282, 369
MspR9I CCNGG 2 cut(s) 327, 369
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 10, 253
NciI CCSGG 1 cut(s) 369
NdeI CATATG 1 cut(s) 321
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 296, 300, 376
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 296
PkrI GCNGC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 264, 390
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 327, 369
SduI GDGCHC 2 cut(s) 44, 189
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 2 cut(s) 207, 391
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 213, 348, 362
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 325, 367
TasI AATT 2 cut(s) 207, 391
Tru1I TTAA 2 cut(s) 264, 390
Tru9I TTAA 2 cut(s) 264, 390
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 282, 369
TspRI CASTG 1 cut(s) 52
XceI RCATGY 1 cut(s) 296
XspI CTAG 3 cut(s) 213, 348, 362
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.