Rh7CG202300

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015615
Physical Location & Seq
Forward (+)
18011608 .. 18015869
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG202300.1

Sequence Viewer

Length: 903 bp
ATGCAAGGGGGAAGAGGTGGAGGGCCTGGTGGCAGGGGTCCTTTTGATTTCAATGATCCTTTTGCTGGTTTTGGGGGTCAGGGGAGTTTGATGTCTAACGTCTTTGGAGGGAGGGATCCGTTTGATGACCCTTTCTTTACTCGCCCGTTTGGAGGGATATTTGACTCGGGTTTTCCGGGTATGGGTGGAGGCATGTTTCCTGGAAGGGGTAGCGGTATGTTTCCTGGAATCGGTGGCGGTATGTTTCCTGGAATCGGTGGCAGTATGTTTCCTGGAATGGGTCCTGGTATGAATGGAGATATGTTTTCAGATATGCGGCCAACTGGGTTCATTGAGAATCACGATCAGGCGCCAGAGCGGCAGAAATCTAGGGGTCCGATCATTGAGGAACTAGACTCTGATCATGAAGAAGAAGAAGAGGCTAATAATGAGAAGAAGGAAAATCCACGGAAACGTGTTGGGCCAAGCAATGATCCTTATGTTGAGCACCCTGATGATGTAGTTGAAGAGAAGAAGAGCAAGCATTTGCAATCTAGGGACAACTACAGTCAGTTTGGTGCTATGCAATCACAGCCTCAAGCTCATAGCTACACATTTCAGAGCTCCAGTGTCACTTATGGCGGTGGTAATGGTGCATACTATACATCTTCCAAGACAAGAAGGATGGGGAGTGATGGGGTTGCTTTTGAAGAAAGCAAGGAAGCTGATACTTCTTCTGGGAAAGCGACACACAGGGTATCTAAGGGGCTCCACAATAAGGGCCATTCAATTACTAGGAAGCTCAAAGAGGGTAAGGTAGATACAATGCAGACTTTGCATAACCTTAATGAAGGTATGTCATTTATATTCAACTCTTGTCTGTGCAGGAAGGTTTATGGGAGTTGTTTAGTACATAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

300

Amino Acids

32.47

Weight (kDa)

6.37

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 136 - 278 1.2e-16 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 358
AciI CCGC 5 cut(s) 213, 237, 316, 358, 621
AclWI GGATC 4 cut(s) 50, 110, 123, 467
AcoI YGGCCR 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 1 cut(s) 891
AfiI CCNNNNNNNGG 8 cut(s) 65, 152, 182, 206, 230, 254, 278, 757
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 5 cut(s) 52, 506, 689, 768, 850
AjnI CCWGG 6 cut(s) 25, 199, 223, 247, 271, 283
AluBI AGCT 5 cut(s) 581, 588, 603, 704, 781
AluI AGCT 5 cut(s) 581, 588, 603, 704, 781
Alw21I GWGCWC 2 cut(s) 489, 605
AlwI GGATC 4 cut(s) 50, 110, 123, 467
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 4 cut(s) 23, 317, 461, 760
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 6 cut(s) 23, 38, 281, 374, 461, 760
AsuC2I CCSGG 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 38, 281, 374
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 2 cut(s) 605, 750
Bbv12I GWGCWC 2 cut(s) 489, 605
BccI CCATC 2 cut(s) 658, 668
BciT130I CCWGG 6 cut(s) 27, 201, 225, 249, 273, 285
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 4 cut(s) 369, 392, 534, 774
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 358
BisI GCNGC 2 cut(s) 317, 359
BlsI GCNGC 2 cut(s) 318, 360
Bme1390I CCNGG 7 cut(s) 27, 177, 201, 225, 249, 273, 285
Bme18I GGWCC 3 cut(s) 38, 281, 374
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 6 cut(s) 23, 38, 281, 374, 461, 760
BmiI GGNNCC 6 cut(s) 39, 117, 282, 351, 375, 749
BmrFI CCNGG 7 cut(s) 27, 177, 201, 225, 249, 273, 285
BmrI ACTGGG 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 152, 182, 206, 230, 254, 278, 757
Bse1I ACTGG 2 cut(s) 328, 606
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 6 cut(s) 27, 201, 225, 249, 273, 285
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 8 cut(s) 65, 152, 182, 206, 230, 254, 278, 757
BseMI GCAATG 1 cut(s) 475
BseNI ACTGG 2 cut(s) 328, 606
BsgI GTGCAG 1 cut(s) 883
BshFI GGCC 4 cut(s) 25, 319, 463, 762
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 489, 605
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 8 cut(s) 65, 152, 182, 206, 230, 254, 278, 757
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 4 cut(s) 25, 319, 463, 762
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 3 cut(s) 489, 605, 750
Bsp143I GATC 6 cut(s) 55, 115, 343, 378, 400, 472
BspACI CCGC 5 cut(s) 213, 237, 316, 358, 621
BspANI GGCC 4 cut(s) 25, 319, 463, 762
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 6 cut(s) 39, 117, 282, 351, 375, 749
BspPI GGATC 4 cut(s) 50, 110, 123, 467
BspQI GCTCTTC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 2 cut(s) 328, 606
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 6 cut(s) 55, 115, 343, 378, 400, 472
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 6 cut(s) 27, 201, 225, 249, 273, 285
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 4 cut(s) 7, 411, 501, 509
BstACI GRCGYC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 814
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 741
BstDSI CCRYGG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 669
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 6 cut(s) 58, 118, 346, 381, 403, 475
BstMBI GATC 6 cut(s) 55, 115, 343, 378, 400, 472
BstMWI GCNNNNNNNGC 3 cut(s) 358, 571, 814
BstNI CCWGG 6 cut(s) 27, 201, 225, 249, 273, 285
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 7 cut(s) 25, 175, 199, 223, 247, 271, 283
BstSFI CTRYAG 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 25, 319, 463, 762
BtgI CCRYGG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 6 cut(s) 23, 38, 281, 374, 461, 760
Csp6I GTAC 1 cut(s) 890
CviAII CATG 2 cut(s) 193, 404
CviQI GTAC 1 cut(s) 890
DdeI CTNAG 1 cut(s) 741
DinI GGCGCC 1 cut(s) 351
DpnI GATC 6 cut(s) 57, 117, 345, 380, 402, 474
DpnII GATC 6 cut(s) 55, 115, 343, 378, 400, 472
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 4 cut(s) 7, 411, 501, 509
EarI CTCTTC 4 cut(s) 7, 411, 501, 509
Ecl136II GAGCTC 1 cut(s) 603
Eco24I GRGCYC 2 cut(s) 605, 750
Eco47I GGWCC 3 cut(s) 38, 281, 374
Eco53kI GAGCTC 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 603
EcoO109I RGGNCCY 3 cut(s) 23, 38, 281
EcoRII CCWGG 6 cut(s) 25, 199, 223, 247, 271, 283
EcoT38I GRGCYC 2 cut(s) 605, 750
EgeI GGCGCC 1 cut(s) 351
EheI GGCGCC 1 cut(s) 351
FaeI CATG 2 cut(s) 196, 407
FaqI GGGAC 1 cut(s) 551
FatI CATG 2 cut(s) 192, 403
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 317, 359
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 2 cut(s) 605, 750
Fsp4HI GCNGC 2 cut(s) 317, 359
FspBI CTAG 4 cut(s) 369, 392, 534, 774
GlaI GCGC 1 cut(s) 351
GluI GCNGC 2 cut(s) 317, 359
GsuI CTGGAG 1 cut(s) 589
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 4 cut(s) 25, 319, 463, 762
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 2 cut(s) 196, 407
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 5 cut(s) 164, 228, 252, 337, 395
HpaII CCGG 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 310, 378, 400, 600
Hpy188III TCNNGA 2 cut(s) 341, 404
HpyAV CCTTC 5 cut(s) 198, 430, 654, 824, 862
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 99, 454
HpyCH4V TGCA 7 cut(s) 4, 529, 565, 635, 808, 817, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 571, 814
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 2 cut(s) 99, 454
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 2 cut(s) 196, 407
HspAI GCGC 1 cut(s) 350
KasI GGCGCC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 55, 115, 343, 378, 400, 472
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 2 cut(s) 608, 753
MaeI CTAG 4 cut(s) 369, 392, 534, 774
MaeII ACGT 2 cut(s) 99, 454
MaeIII GTNAC 1 cut(s) 610
MalI GATC 6 cut(s) 57, 117, 345, 380, 402, 474
MbiI CCGCTC 1 cut(s) 358
MboI GATC 6 cut(s) 55, 115, 343, 378, 400, 472
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 489, 605, 750
MluCI AATT 1 cut(s) 768
Mly113I GGCGCC 1 cut(s) 350
MlyI GAGTC 2 cut(s) 158, 389
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 7 cut(s) 27, 177, 201, 225, 249, 273, 285
MvaI CCWGG 6 cut(s) 27, 201, 225, 249, 273, 285
MwoI GCNNNNNNNGC 3 cut(s) 358, 571, 814
NarI GGCGCC 1 cut(s) 350
NciI CCSGG 1 cut(s) 177
NdeII GATC 6 cut(s) 55, 115, 343, 378, 400, 472
NlaIII CATG 2 cut(s) 196, 407
NlaIV GGNNCC 6 cut(s) 39, 117, 282, 351, 375, 749
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 228, 252, 337
PfoI TCCNGGA 4 cut(s) 199, 223, 247, 271
PkrI GCNGC 2 cut(s) 318, 360
PleI GAGTC 2 cut(s) 158, 389
PluTI GGCGCC 1 cut(s) 353
PpsI GAGTC 2 cut(s) 158, 389
PpuMI RGGWCCY 2 cut(s) 38, 281
Psp124BI GAGCTC 1 cut(s) 605
Psp5II RGGWCCY 2 cut(s) 38, 281
Psp6I CCWGG 6 cut(s) 25, 199, 223, 247, 271, 283
PspGI CCWGG 6 cut(s) 25, 199, 223, 247, 271, 283
PspN4I GGNNCC 6 cut(s) 39, 117, 282, 351, 375, 749
PspPI GGNCC 6 cut(s) 23, 38, 281, 374, 461, 760
PspPPI RGGWCCY 2 cut(s) 38, 281
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 891
RsaNI GTAC 1 cut(s) 890
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 605
SapI GCTCTTC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 2 cut(s) 317, 359
Sau3AI GATC 6 cut(s) 55, 115, 343, 378, 400, 472
Sau96I GGNCC 6 cut(s) 23, 38, 281, 374, 461, 760
SchI GAGTC 2 cut(s) 158, 389
ScrFI CCNGG 7 cut(s) 27, 177, 201, 225, 249, 273, 285
SduI GDGCHC 3 cut(s) 489, 605, 750
SfcI CTRYAG 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 351
SinI GGWCC 3 cut(s) 38, 281, 374
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 1 cut(s) 768
SsiI CCGC 5 cut(s) 213, 237, 316, 358, 621
SspDI GGCGCC 1 cut(s) 349
SspMI CTAG 4 cut(s) 369, 392, 534, 774
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 7 cut(s) 25, 175, 199, 223, 247, 271, 283
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 102, 457
TasI AATT 1 cut(s) 768
TatI WGTACW 1 cut(s) 889
TauI GCSGC 2 cut(s) 319, 361
TfiI GAWTC 3 cut(s) 228, 252, 337
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 4 cut(s) 305, 319, 420, 843
TspGWI ACGGA 2 cut(s) 108, 463
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 3 cut(s) 38, 281, 374
XceI RCATGY 1 cut(s) 196
XspI CTAG 4 cut(s) 369, 392, 534, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.