RLG00000003669

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015615
Physical Location & Seq
Reverse (-)
51453643 .. 51455857
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003669

Sequence Viewer

Length: 1092 bp
ATGCAAGGGGGAAGAGGTGGAGGGCCTGGTGGCAGGGGTCCTTTTGATTTCAATGATCCTTTTGCTGGTTTTGGTGGATTTGGGGGTCAGGGGAGTTTGATGTCTAACTTTTTCGGAGGGAGGGATCCGTTTGATGACCCTTTCTTTACTCGCCCGTTTGGAGGGATATTTGACTCGGGTTTTTCGGGTATGGGTGGAGGCATGTTTCCTGGAAGGGGTGGCAGTATGTTTCCTGGAATGGGTGGCGGTATGTTTCCTGGAATGGGTCCTGGTATGAATGGAGATATTTTTTCAGATATGCGGCCAACTGGGTTCATTGAGAATCACGATCAGGCTCCAGAGCGGCAGAAATCTAGGGGTCCGATCATTGAGGAACTAGATTCTGATCATGAAGAAGAGGCTAATACTGAGAAAAAGGAAAATCCGCGGAAACGTGTTGGGCCAAGCAATGATCCTTATGTTGAGCACCCTGATGATGTAGTTGAAGAGAAGAAGAGCAAGCATTTGCAATCTAGGGACAGCTACAGTCAGTTTGGTGCTATGCAATCACAGCCTCAAGCTCATAGCTACACGTTTCAGAGCTCCAGTGTCACTTATGGTGGTGGTAATGGTGCATACTATACATCTTCCAAGACAAGAAGGATGGGGAGTGATGGGGTTGCTTTTGAAGAAAGCAAGGAAGCTGATACTTCTTCTGGGAAAGCCGCACACAGGGTATCTAAGGGGCTTCACAATAAGGGCCATTCAATTACTAGGAAGCTCAAAGATGGCAAGGTAGATACAATGCAGACTTTGCATAACCTGAATGAAGATGAGCTTTCCGGTTTTGAACATGCATGGAAGGGAGCTGCTCAAAAACATATGCCTGGATTGAATGATCAGTTTGCTAGTTATGAAAGTCTAGGAGCTGGCGGCAGCAGACATGGGCAGGCCGGTCAGGGAGGTTGGGCACTTCCTAGCAACGATCTTCTACAGAACTCTGGAAATATGATAGCAGATGCCCAAGGCAAGGCAGTACCTTCTCGGTCACAGCAGTCTGGTAATATGAGAGTAGGTGGTACTAATTCTTCCCGTGGGAGAGCAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

364

Amino Acids

38.68

Weight (kDa)

6.32

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 135 - 282 2.3e-20 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 343
AccII CGCG 1 cut(s) 427
AciI CCGC 7 cut(s) 246, 301, 343, 425, 427, 705, 912
AclWI GGATC 4 cut(s) 50, 119, 132, 446
AcoI YGGCCR 1 cut(s) 302
AfaI GTAC 2 cut(s) 1017, 1060
AfiI CCNNNNNNNGG 7 cut(s) 65, 161, 215, 239, 263, 711, 1009
AflIII ACRYGT 2 cut(s) 433, 570
AgsI TTSAA 6 cut(s) 52, 485, 668, 747, 830, 874
AjnI CCWGG 6 cut(s) 25, 208, 232, 256, 268, 865
AluBI AGCT 9 cut(s) 522, 560, 567, 582, 683, 760, 817, 848, 908
AluI AGCT 9 cut(s) 522, 560, 567, 582, 683, 760, 817, 848, 908
Alw21I GWGCWC 2 cut(s) 468, 584
AlwI GGATC 4 cut(s) 50, 119, 132, 446
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 23, 302, 440, 739, 930
ApeKI GCWGC 2 cut(s) 848, 915
AspS9I GGNCC 6 cut(s) 23, 38, 266, 359, 440, 739
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 38, 266, 359
BaeGI GKGCMC 1 cut(s) 952
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 1051, 1083
Bbv12I GWGCWC 2 cut(s) 468, 584
BbvI GCAGC 2 cut(s) 835, 927
BccI CCATC 3 cut(s) 637, 647, 761
BciT130I CCWGG 6 cut(s) 27, 210, 234, 258, 270, 867
BclI TGATCA 2 cut(s) 385, 877
BfaI CTAG 7 cut(s) 354, 377, 513, 753, 888, 902, 957
BfmI CTRYAG 2 cut(s) 523, 971
BisI GCNGC 6 cut(s) 302, 344, 705, 849, 913, 916
BlsI GCNGC 6 cut(s) 303, 345, 706, 850, 914, 917
Bme1390I CCNGG 6 cut(s) 27, 210, 234, 258, 270, 867
Bme18I GGWCC 3 cut(s) 38, 266, 359
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 6 cut(s) 23, 38, 266, 359, 440, 739
BmiI GGNNCC 5 cut(s) 39, 126, 267, 336, 360
BmrFI CCNGG 6 cut(s) 27, 210, 234, 258, 270, 867
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 988
BmuI ACTGGG 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 321, 568
BpuEI CTTGAG 1 cut(s) 540
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 425, 1003, 1072
BsaWI WCCGGW 1 cut(s) 821
Bsc4I CCNNNNNNNGG 7 cut(s) 65, 161, 215, 239, 263, 711, 1009
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 2 cut(s) 313, 585
Bse3DI GCAATG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 6 cut(s) 27, 210, 234, 258, 270, 867
BseDI CCNNGG 3 cut(s) 425, 1003, 1072
BseGI GGATG 1 cut(s) 648
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 7 cut(s) 65, 161, 215, 239, 263, 711, 1009
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 2 cut(s) 313, 585
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 2 cut(s) 835, 927
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 5 cut(s) 25, 304, 442, 741, 932
BsiHKAI GWGCWC 2 cut(s) 468, 584
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 822, 933
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 7 cut(s) 65, 161, 215, 239, 263, 711, 1009
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 5 cut(s) 25, 304, 442, 741, 932
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 468, 584, 952
Bsp143I GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
BspACI CCGC 7 cut(s) 246, 301, 343, 425, 427, 705, 912
BspANI GGCC 5 cut(s) 25, 304, 442, 741, 932
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 5 cut(s) 39, 126, 267, 336, 360
BspPI GGATC 4 cut(s) 50, 119, 132, 446
BspQI GCTCTTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 2 cut(s) 313, 585
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 3 cut(s) 425, 1003, 1072
BssMI GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
BssT1I CCWWGG 1 cut(s) 1003
Bst2UI CCWGG 6 cut(s) 27, 210, 234, 258, 270, 867
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 4 cut(s) 7, 390, 480, 488
BstAPI GCANNNNNTGC 1 cut(s) 793
BstC8I GCNNGC 3 cut(s) 500, 910, 930
BstDEI CTNAG 2 cut(s) 408, 720
BstDSI CCRYGG 2 cut(s) 425, 1072
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 8 cut(s) 58, 127, 331, 366, 388, 454, 880, 967
BstMBI GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
BstMWI GCNNNNNNNGC 2 cut(s) 550, 793
BstNI CCWGG 6 cut(s) 27, 210, 234, 258, 270, 867
BstNSI RCATGY 2 cut(s) 205, 836
BstSCI CCNGG 6 cut(s) 25, 208, 232, 256, 268, 865
BstSFI CTRYAG 2 cut(s) 523, 971
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 835, 927
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 5 cut(s) 25, 304, 442, 741, 932
BtgI CCRYGG 2 cut(s) 425, 1072
BtsCI GGATG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 3 cut(s) 500, 910, 930
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 6 cut(s) 23, 38, 266, 359, 440, 739
Cfr42I CCGCGG 1 cut(s) 428
Csp6I GTAC 2 cut(s) 1016, 1059
CviAII CATG 5 cut(s) 202, 389, 833, 837, 923
CviQI GTAC 2 cut(s) 1016, 1059
DdeI CTNAG 2 cut(s) 408, 720
DpnI GATC 8 cut(s) 57, 126, 330, 365, 387, 453, 879, 966
DpnII GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 4 cut(s) 7, 390, 480, 488
EarI CTCTTC 4 cut(s) 7, 390, 480, 488
Ecl136II GAGCTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 1003
Eco24I GRGCYC 1 cut(s) 584
Eco47I GGWCC 3 cut(s) 38, 266, 359
Eco53kI GAGCTC 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 582
EcoO109I RGGNCCY 3 cut(s) 23, 38, 266
EcoRII CCWGG 6 cut(s) 25, 208, 232, 256, 268, 865
EcoT14I CCWWGG 1 cut(s) 1003
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 1003
FaeI CATG 5 cut(s) 205, 392, 836, 840, 926
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 530
FatI CATG 5 cut(s) 201, 388, 832, 836, 922
FauNDI CATATG 1 cut(s) 861
FbaI TGATCA 2 cut(s) 385, 877
Fnu4HI GCNGC 6 cut(s) 302, 344, 705, 849, 913, 916
FokI GGATG 1 cut(s) 655
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 6 cut(s) 302, 344, 705, 849, 913, 916
FspBI CTAG 7 cut(s) 354, 377, 513, 753, 888, 902, 957
GluI GCNGC 6 cut(s) 302, 344, 705, 849, 913, 916
GsuI CTGGAG 2 cut(s) 321, 568
HaeIII GGCC 5 cut(s) 25, 304, 442, 741, 932
HapII CCGG 2 cut(s) 822, 933
Hin1II CATG 5 cut(s) 205, 392, 836, 840, 926
HinfI GANTC 3 cut(s) 173, 322, 380
HpaII CCGG 2 cut(s) 822, 933
Hpy188I TCNGA 5 cut(s) 116, 295, 363, 385, 579
Hpy188III TCNNGA 4 cut(s) 326, 338, 389, 981
HpyAV CCTTC 4 cut(s) 207, 633, 835, 1029
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 2 cut(s) 433, 572
HpyCH4V TGCA 7 cut(s) 4, 508, 544, 614, 787, 796, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 793
HpyF3I CTNAG 2 cut(s) 408, 720
HpySE526I ACGT 2 cut(s) 433, 572
Hsp92II CATG 5 cut(s) 205, 392, 836, 840, 926
Ksp22I TGATCA 2 cut(s) 385, 877
KspI CCGCGG 1 cut(s) 428
Kzo9I GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 4 cut(s) 340, 587, 845, 905
Lsp1109I GCAGC 2 cut(s) 835, 927
LweI GCATC 1 cut(s) 988
MaeI CTAG 7 cut(s) 354, 377, 513, 753, 888, 902, 957
MaeII ACGT 2 cut(s) 433, 572
MaeIII GTNAC 2 cut(s) 589, 1026
MalI GATC 8 cut(s) 57, 126, 330, 365, 387, 453, 879, 966
MbiI CCGCTC 1 cut(s) 343
MboI GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 3 cut(s) 468, 584, 952
MluCI AATT 2 cut(s) 747, 1063
MlyI GAGTC 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 838
MseI TTAA 1 cut(s) 1090
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 2 cut(s) 822, 933
MspR9I CCNGG 6 cut(s) 27, 210, 234, 258, 270, 867
MvaI CCWGG 6 cut(s) 27, 210, 234, 258, 270, 867
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 550, 793
NdeI CATATG 1 cut(s) 861
NdeII GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
NlaIII CATG 5 cut(s) 205, 392, 836, 840, 926
NlaIV GGNNCC 5 cut(s) 39, 126, 267, 336, 360
NmuCI GTSAC 2 cut(s) 589, 1026
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 2 cut(s) 205, 836
PagI TCATGA 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 322, 380
PfoI TCCNGGA 3 cut(s) 208, 232, 256
PkrI GCNGC 6 cut(s) 303, 345, 706, 850, 914, 917
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 2 cut(s) 38, 266
Psp124BI GAGCTC 1 cut(s) 584
Psp5II RGGWCCY 2 cut(s) 38, 266
Psp6I CCWGG 6 cut(s) 25, 208, 232, 256, 268, 865
PspGI CCWGG 6 cut(s) 25, 208, 232, 256, 268, 865
PspN4I GGNNCC 5 cut(s) 39, 126, 267, 336, 360
PspPI GGNCC 6 cut(s) 23, 38, 266, 359, 440, 739
PspPPI RGGWCCY 2 cut(s) 38, 266
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 1017, 1060
RsaNI GTAC 2 cut(s) 1016, 1059
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 584
SacII CCGCGG 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 1090
SatI GCNGC 6 cut(s) 302, 344, 705, 849, 913, 916
Sau3AI GATC 8 cut(s) 55, 124, 328, 363, 385, 451, 877, 964
Sau96I GGNCC 6 cut(s) 23, 38, 266, 359, 440, 739
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 6 cut(s) 27, 210, 234, 258, 270, 867
SduI GDGCHC 3 cut(s) 468, 584, 952
SfaNI GCATC 1 cut(s) 988
SfcI CTRYAG 2 cut(s) 523, 971
Sfr303I CCGCGG 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 428
SinI GGWCC 3 cut(s) 38, 266, 359
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
Sse9I AATT 2 cut(s) 747, 1063
SsiI CCGC 7 cut(s) 246, 301, 343, 425, 427, 705, 912
SspMI CTAG 7 cut(s) 354, 377, 513, 753, 888, 902, 957
SstI GAGCTC 1 cut(s) 584
StyD4I CCNGG 6 cut(s) 25, 208, 232, 256, 268, 865
StyI CCWWGG 1 cut(s) 1003
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 2 cut(s) 436, 575
TaqII GACCGA 1 cut(s) 1014
TasI AATT 2 cut(s) 747, 1063
TauI GCSGC 4 cut(s) 304, 346, 707, 915
TfiI GAWTC 2 cut(s) 322, 380
Tru1I TTAA 1 cut(s) 1090
Tru9I TTAA 1 cut(s) 1090
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 589, 1026
TseI GCWGC 2 cut(s) 848, 915
Tsp45I GTSAC 2 cut(s) 589, 1026
TspDTI ATGAA 5 cut(s) 290, 304, 405, 822, 909
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 38, 266, 359
XceI RCATGY 2 cut(s) 205, 836
XspI CTAG 7 cut(s) 354, 377, 513, 753, 888, 902, 957
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.