Rmu_sc0017656.1_g000004

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017656.1
OG0015615
Physical Location & Seq
Reverse (-)
8983 .. 11185
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017656.1_g000004.1.cds

Sequence Viewer

Length: 1119 bp
atgcaagggggaagaggtggagggcctggtggcaggggtccttttgatttcaatgatccttttgctggttttgggggatttgggggtcaggggagtttgatgtctaacgtctttggagggagggatccgtttgatgaccctttctttactcgcccgtttggagggatatttgactcgggttttccgggtatgggtggaggcatgtttcctggaaggggtggcggtatgtttcctggaatcggtggcggtatgtttcctgcaatcggtggcagtatgtttcctggaatgggtcctggtatgaatggagattttttttcagatatgcggccaactgggttcattgagaatcacgatcaggctccagagcggcagaaatctaggggtccgatcattgaggaactagactctgatcatgaagaagaagaggctaataatgagaagaaggaaaatccgcggaaacgtcttgggccaagcaatgatccttatgttgagcaccctgatgacgtagttgaagagaagaagagcaagcatttgcaatctagggacaactacagtcagtttggtgctatgcaatcacagcctcaagctcatagctacacatttcagagctccagtgtcacttatggcggtggtaatggtgcatactatacatcttccaagacaagaaggatggggagtgatggggttgcttttgaagaaagcaaagaagctgatacttcttctgggaaagcgacacacagggtatctaaggggctccacaataagggccattcaattactaggaagctcaaagagggtaaggtagatacaatgcagactttgcataaccttaatgaagatgagctttccggttttgaacatgcatggaagggagctgctcaaaaacatatgcctggattgaatgatcagtttgctagttatgaaagtctaggagctggcggtggcagaaatgggcaggctggtcagggaggttgggcacttcctagcaacgatcttctacagaactctggaaatatgatagcagatgcccaaggcaaagcagtaccttctcggtcgcagcggtctggtaatatgagagtagatggtactaattcttcccgtgggagagcaaaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

372

Amino Acids

39.65

Weight (kDa)

6.14

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 1 cut(s) 454
AciI CCGC 9 cut(s) 222, 246, 325, 367, 452, 454, 627, 939, 1060
AclWI GGATC 4 cut(s) 50, 119, 132, 473
AcoI YGGCCR 1 cut(s) 326
AfaI GTAC 2 cut(s) 1044, 1087
AfiI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
AgsI TTSAA 6 cut(s) 52, 512, 695, 774, 857, 901
AjnI CCWGG 6 cut(s) 25, 208, 232, 280, 292, 892
AluBI AGCT 8 cut(s) 587, 594, 609, 710, 787, 844, 875, 935
AluI AGCT 8 cut(s) 587, 594, 609, 710, 787, 844, 875, 935
Alw21I GWGCWC 2 cut(s) 495, 611
AlwI GGATC 4 cut(s) 50, 119, 132, 473
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 4 cut(s) 23, 326, 467, 766
ApeKI GCWGC 2 cut(s) 875, 1057
AspS9I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
AsuC2I CCSGG 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 38, 290, 383
BaeGI GKGCMC 1 cut(s) 979
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 611, 756
BarI GAAGNNNNNNTAC 2 cut(s) 1078, 1110
Bbv12I GWGCWC 2 cut(s) 495, 611
BbvI GCAGC 2 cut(s) 862, 1069
BccI CCATC 3 cut(s) 664, 674, 1076
BciT130I CCWGG 6 cut(s) 27, 210, 234, 282, 294, 894
BclI TGATCA 2 cut(s) 409, 904
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 7 cut(s) 378, 401, 540, 780, 915, 929, 984
BfmI CTRYAG 2 cut(s) 550, 998
BisI GCNGC 4 cut(s) 326, 368, 876, 1058
BlsI GCNGC 4 cut(s) 327, 369, 877, 1059
Bme1390I CCNGG 7 cut(s) 27, 186, 210, 234, 282, 294, 894
Bme18I GGWCC 3 cut(s) 38, 290, 383
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
BmiI GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
BmrFI CCNGG 7 cut(s) 27, 186, 210, 234, 282, 294, 894
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 1015
BmuI ACTGGG 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 345, 595
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 452, 1030, 1099
BsaWI WCCGGW 1 cut(s) 848
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
Bse1I ACTGG 2 cut(s) 337, 612
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 6 cut(s) 27, 210, 234, 282, 294, 894
BseDI CCNNGG 3 cut(s) 452, 1030, 1099
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
BseMI GCAATG 1 cut(s) 481
BseNI ACTGG 2 cut(s) 337, 612
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 2 cut(s) 862, 1069
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 1055
BshFI GGCC 4 cut(s) 25, 328, 469, 768
BsiEI CGRYCG 1 cut(s) 1055
BsiHKAI GWGCWC 2 cut(s) 495, 611
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 185, 849
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 4 cut(s) 25, 328, 469, 768
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 495, 611, 756, 979
Bsp143I GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BspACI CCGC 9 cut(s) 222, 246, 325, 367, 452, 454, 627, 939, 1060
BspANI GGCC 4 cut(s) 25, 328, 469, 768
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
BspPI GGATC 4 cut(s) 50, 119, 132, 473
BspQI GCTCTTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 2 cut(s) 337, 612
BssECI CCNNGG 3 cut(s) 452, 1030, 1099
BssMI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BssT1I CCWWGG 1 cut(s) 1030
Bst2UI CCWGG 6 cut(s) 27, 210, 234, 282, 294, 894
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 4 cut(s) 7, 417, 507, 515
BstAPI GCANNNNNTGC 1 cut(s) 820
BstC8I GCNNGC 3 cut(s) 527, 937, 957
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 2 cut(s) 452, 1099
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 8 cut(s) 58, 127, 355, 390, 412, 481, 907, 994
BstMBI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BstMCI CGRYCG 1 cut(s) 1055
BstMWI GCNNNNNNNGC 2 cut(s) 577, 820
BstNI CCWGG 6 cut(s) 27, 210, 234, 282, 294, 894
BstNSI RCATGY 2 cut(s) 205, 863
BstSCI CCNGG 7 cut(s) 25, 184, 208, 232, 280, 292, 892
BstSFI CTRYAG 2 cut(s) 550, 998
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 862, 1069
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 4 cut(s) 25, 328, 469, 768
BtgI CCRYGG 2 cut(s) 452, 1099
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 527, 937, 957
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
Cfr42I CCGCGG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 1043, 1086
CviAII CATG 4 cut(s) 202, 413, 860, 864
CviQI GTAC 2 cut(s) 1043, 1086
DdeI CTNAG 1 cut(s) 747
DpnI GATC 8 cut(s) 57, 126, 354, 389, 411, 480, 906, 993
DpnII GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 7, 417, 507, 515
EarI CTCTTC 4 cut(s) 7, 417, 507, 515
Ecl136II GAGCTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 611, 756
Eco47I GGWCC 3 cut(s) 38, 290, 383
Eco53kI GAGCTC 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 609
EcoO109I RGGNCCY 3 cut(s) 23, 38, 290
EcoRII CCWGG 6 cut(s) 25, 208, 232, 280, 292, 892
EcoT14I CCWWGG 1 cut(s) 1030
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 2 cut(s) 611, 756
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 4 cut(s) 205, 416, 863, 867
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 201, 412, 859, 863
FauNDI CATATG 1 cut(s) 888
FbaI TGATCA 2 cut(s) 409, 904
Fnu4HI GCNGC 4 cut(s) 326, 368, 876, 1058
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 2 cut(s) 611, 756
Fsp4HI GCNGC 4 cut(s) 326, 368, 876, 1058
FspBI CTAG 7 cut(s) 378, 401, 540, 780, 915, 929, 984
GluI GCNGC 4 cut(s) 326, 368, 876, 1058
GsuI CTGGAG 2 cut(s) 345, 595
HaeIII GGCC 4 cut(s) 25, 328, 469, 768
HapII CCGG 2 cut(s) 185, 849
Hin1II CATG 4 cut(s) 205, 416, 863, 867
HinfI GANTC 4 cut(s) 173, 237, 346, 404
HpaII CCGG 2 cut(s) 185, 849
Hpy188I TCNGA 4 cut(s) 319, 387, 409, 606
Hpy188III TCNNGA 4 cut(s) 350, 362, 413, 1008
HpyAV CCTTC 5 cut(s) 207, 436, 660, 862, 1056
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 3 cut(s) 108, 460, 504
HpyCH4V TGCA 8 cut(s) 4, 260, 535, 571, 641, 814, 823, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 577, 820
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 3 cut(s) 108, 460, 504
Hsp92II CATG 4 cut(s) 205, 416, 863, 867
Ksp22I TGATCA 2 cut(s) 409, 904
KspI CCGCGG 1 cut(s) 455
Kzo9I GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 5 cut(s) 364, 614, 759, 872, 932
Lsp1109I GCAGC 2 cut(s) 862, 1069
LweI GCATC 1 cut(s) 1015
MaeI CTAG 7 cut(s) 378, 401, 540, 780, 915, 929, 984
MaeII ACGT 3 cut(s) 108, 460, 504
MaeIII GTNAC 1 cut(s) 616
MalI GATC 8 cut(s) 57, 126, 354, 389, 411, 480, 906, 993
MbiI CCGCTC 1 cut(s) 367
MboI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 495, 611, 756, 979
MluCI AATT 2 cut(s) 774, 1090
MlyI GAGTC 2 cut(s) 167, 398
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 2 cut(s) 831, 1117
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 454, 1060
MspI CCGG 2 cut(s) 185, 849
MspR9I CCNGG 7 cut(s) 27, 186, 210, 234, 282, 294, 894
MvaI CCWGG 6 cut(s) 27, 210, 234, 282, 294, 894
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 577, 820
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 888
NdeII GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
NlaIII CATG 4 cut(s) 205, 416, 863, 867
NlaIV GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 205, 863
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 237, 346
PfoI TCCNGGA 3 cut(s) 208, 232, 280
PkrI GCNGC 4 cut(s) 327, 369, 877, 1059
PleI GAGTC 2 cut(s) 167, 398
PpsI GAGTC 2 cut(s) 167, 398
PpuMI RGGWCCY 2 cut(s) 38, 290
Psp124BI GAGCTC 1 cut(s) 611
Psp5II RGGWCCY 2 cut(s) 38, 290
Psp6I CCWGG 6 cut(s) 25, 208, 232, 280, 292, 892
PspGI CCWGG 6 cut(s) 25, 208, 232, 280, 292, 892
PspN4I GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
PspPI GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
PspPPI RGGWCCY 2 cut(s) 38, 290
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 1044, 1087
RsaNI GTAC 2 cut(s) 1043, 1086
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 611
SacII CCGCGG 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 831, 1117
SatI GCNGC 4 cut(s) 326, 368, 876, 1058
Sau3AI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
Sau96I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
SchI GAGTC 2 cut(s) 167, 398
ScrFI CCNGG 7 cut(s) 27, 186, 210, 234, 282, 294, 894
SduI GDGCHC 4 cut(s) 495, 611, 756, 979
SfaNI GCATC 1 cut(s) 1015
SfcI CTRYAG 2 cut(s) 550, 998
Sfr303I CCGCGG 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 455
SinI GGWCC 3 cut(s) 38, 290, 383
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 2 cut(s) 774, 1090
SsiI CCGC 9 cut(s) 222, 246, 325, 367, 452, 454, 627, 939, 1060
SspMI CTAG 7 cut(s) 378, 401, 540, 780, 915, 929, 984
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 7 cut(s) 25, 184, 208, 232, 280, 292, 892
StyI CCWWGG 1 cut(s) 1030
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 3 cut(s) 111, 463, 507
TaqII GACCGA 1 cut(s) 1041
TasI AATT 2 cut(s) 774, 1090
TauI GCSGC 2 cut(s) 328, 370
TfiI GAWTC 2 cut(s) 237, 346
Tru1I TTAA 2 cut(s) 831, 1117
Tru9I TTAA 2 cut(s) 831, 1117
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 875, 1057
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 314, 328, 429, 849, 936
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 3 cut(s) 38, 290, 383
XceI RCATGY 2 cut(s) 205, 863
XspI CTAG 7 cut(s) 378, 401, 540, 780, 915, 929, 984
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.