Rh7AG190900

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015615
Physical Location & Seq
Forward (+)
17126860 .. 17131168
4309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG190900.1

Sequence Viewer

Length: 936 bp
ATGCAAGGGGGAAGAGGTGGAGGGCCTGGTGGCAGGGGTCCTTTTGATTTCAATGATCCTTTTGCTGGTTTTGGGGGATTTGGGGGTCAGGGGAGTTTGATGTCTAACGTCTTCGGAGGGAGGGATCCGTTTGATGACCCTTTCTTTACTCGCCCGTTTGGAGGGATATTTGACTCGGGTTTTCCGGGTATGGGTGGAGGCATGTTTCCTGGAAGGGGTGGCGGTATGTTTCCTGGAATGGGTGGCGGTATGTTTCCTGGAATCGGTGGCACTATGTTTCCTGGAATCGGTCCTGGTATGAATGGAGATATTTTTTCAGATATGCGGCCAACTGGGTTCATTGAGAATCACGATCAGGCGCCAGAGCGGCAGAAATCTAGGGGTCCGATCATTGAGGAACTAGACTCTGATCATGAAGAAGAAGAGGCTAATAATGAGAAGAAGGAAAATCCGCGGAAACGTGTTGGGCCAAGCAATGATCCTTATGTTGAGCACCCTGATGATGTAGTTGAAGAGAAGAAGAGCAAGCATTTGCAATCTAGGGACAACTACGGTCAGTTTGGTGCTATGCAATCACAGCCTCAAGCTCATAGCTACACATTTCAGAGCTCCAGTGTCACTTATGGCGGTGGTAATGGTGCATACTATACATCTTCCAAGACAAGAAGGATGGGGAGTGATGGGGTTGCTTTTGAAGAAAGCAAGGAAGCTGATACTTCTTCTGGTAAAGCGACACACAGGGTATCTAAGGGGCTCCACAATAAGGGCCATTCAATTACTAGGAAGCTCAAAGAGGGTAAGGTAGATACAATGCAGACTTTGCATAACCTTAATGAAGGTATGTTATTTATATTCAACTCTTGTCTGTGCCGGAAGGTTTATGGGAGTTGTTTAGTACATAGAAAACAGAGACTAACTCGGCCTGCTGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

311

Amino Acids

33.63

Weight (kDa)

7.16

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 143 - 280 5.4e-17 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 1 cut(s) 454
AciI CCGC 7 cut(s) 222, 246, 325, 367, 452, 454, 627
AclWI GGATC 4 cut(s) 50, 119, 132, 473
AcoI YGGCCR 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 897
AfiI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 5 cut(s) 52, 512, 695, 774, 856
AjnI CCWGG 6 cut(s) 25, 208, 232, 256, 280, 292
AluBI AGCT 5 cut(s) 587, 594, 609, 710, 787
AluI AGCT 5 cut(s) 587, 594, 609, 710, 787
Alw21I GWGCWC 2 cut(s) 495, 611
Alw26I GTCTC 1 cut(s) 904
AlwI GGATC 4 cut(s) 50, 119, 132, 473
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 23, 326, 467, 766, 920
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
AsuC2I CCSGG 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 38, 290, 383
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 611, 756
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 2 cut(s) 495, 611
BccI CCATC 2 cut(s) 664, 674
BciT130I CCWGG 6 cut(s) 27, 210, 234, 258, 282, 294
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 4 cut(s) 378, 401, 540, 780
BfoI RGCGCY 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 326, 368
BlsI GCNGC 2 cut(s) 327, 369
Bme1390I CCNGG 7 cut(s) 27, 186, 210, 234, 258, 282, 294
Bme18I GGWCC 3 cut(s) 38, 290, 383
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
BmiI GGNNCC 5 cut(s) 39, 126, 360, 384, 755
BmrFI CCNGG 7 cut(s) 27, 186, 210, 234, 258, 282, 294
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 901, 933
BpmI CTGGAG 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
Bse1I ACTGG 2 cut(s) 337, 612
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 6 cut(s) 27, 210, 234, 258, 282, 294
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
BseMI GCAATG 1 cut(s) 481
BseNI ACTGG 2 cut(s) 337, 612
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 5 cut(s) 25, 328, 469, 768, 922
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 495, 611
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 185, 871
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 8 cut(s) 65, 161, 191, 215, 239, 263, 287, 763
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 5 cut(s) 25, 328, 469, 768, 922
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 495, 611, 756
Bsp143I GATC 6 cut(s) 55, 124, 352, 387, 409, 478
BspACI CCGC 7 cut(s) 222, 246, 325, 367, 452, 454, 627
BspANI GGCC 5 cut(s) 25, 328, 469, 768, 922
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 5 cut(s) 39, 126, 360, 384, 755
BspPI GGATC 4 cut(s) 50, 119, 132, 473
BspQI GCTCTTC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 2 cut(s) 337, 612
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
BssNI GRCGYC 1 cut(s) 359
Bst2UI CCWGG 6 cut(s) 27, 210, 234, 258, 282, 294
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 4 cut(s) 7, 417, 507, 515
BstACI GRCGYC 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 820
BstC8I GCNNGC 2 cut(s) 527, 924
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 6 cut(s) 58, 127, 355, 390, 412, 481
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
BstMWI GCNNNNNNNGC 3 cut(s) 367, 577, 820
BstNI CCWGG 6 cut(s) 27, 210, 234, 258, 282, 294
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 7 cut(s) 25, 184, 208, 232, 256, 280, 292
BstUI CGCG 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 5 cut(s) 25, 328, 469, 768, 922
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 527, 924
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
Cfr42I CCGCGG 1 cut(s) 455
Csp6I GTAC 1 cut(s) 896
CviAII CATG 2 cut(s) 202, 413
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 1 cut(s) 747
DinI GGCGCC 1 cut(s) 360
DpnI GATC 6 cut(s) 57, 126, 354, 389, 411, 480
DpnII GATC 6 cut(s) 55, 124, 352, 387, 409, 478
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 7, 417, 507, 515
EarI CTCTTC 4 cut(s) 7, 417, 507, 515
Ecl136II GAGCTC 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 611, 756
Eco47I GGWCC 3 cut(s) 38, 290, 383
Eco53kI GAGCTC 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 609
EcoO109I RGGNCCY 2 cut(s) 23, 38
EcoRII CCWGG 6 cut(s) 25, 208, 232, 256, 280, 292
EcoT38I GRGCYC 2 cut(s) 611, 756
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
FaeI CATG 2 cut(s) 205, 416
FaqI GGGAC 1 cut(s) 557
FatI CATG 2 cut(s) 201, 412
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 326, 368
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 2 cut(s) 611, 756
Fsp4HI GCNGC 2 cut(s) 326, 368
FspBI CTAG 4 cut(s) 378, 401, 540, 780
GlaI GCGC 1 cut(s) 360
GluI GCNGC 2 cut(s) 326, 368
GsuI CTGGAG 1 cut(s) 595
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 5 cut(s) 25, 328, 469, 768, 922
HapII CCGG 2 cut(s) 185, 871
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 2 cut(s) 205, 416
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 5 cut(s) 173, 261, 285, 346, 404
HpaII CCGG 2 cut(s) 185, 871
Hpy188I TCNGA 5 cut(s) 116, 319, 387, 409, 606
Hpy188III TCNNGA 2 cut(s) 350, 413
HpyAV CCTTC 5 cut(s) 207, 436, 660, 830, 868
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 2 cut(s) 108, 460
HpyCH4V TGCA 6 cut(s) 4, 535, 571, 641, 814, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 577, 820
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 2 cut(s) 108, 460
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 2 cut(s) 205, 416
HspAI GCGC 1 cut(s) 359
KasI GGCGCC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 455
Kzo9I GATC 6 cut(s) 55, 124, 352, 387, 409, 478
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 614, 759
MaeI CTAG 4 cut(s) 378, 401, 540, 780
MaeII ACGT 2 cut(s) 108, 460
MaeIII GTNAC 1 cut(s) 616
MalI GATC 6 cut(s) 57, 126, 354, 389, 411, 480
MbiI CCGCTC 1 cut(s) 367
MboI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 3 cut(s) 495, 611, 756
MluCI AATT 1 cut(s) 774
Mly113I GGCGCC 1 cut(s) 359
MlyI GAGTC 2 cut(s) 167, 398
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 185, 871
MspR9I CCNGG 7 cut(s) 27, 186, 210, 234, 258, 282, 294
MvaI CCWGG 6 cut(s) 27, 210, 234, 258, 282, 294
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 367, 577, 820
NarI GGCGCC 1 cut(s) 359
NciI CCSGG 1 cut(s) 186
NdeII GATC 6 cut(s) 55, 124, 352, 387, 409, 478
NlaIII CATG 2 cut(s) 205, 416
NlaIV GGNNCC 5 cut(s) 39, 126, 360, 384, 755
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 1 cut(s) 205
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 261, 285, 346
PfoI TCCNGGA 4 cut(s) 208, 232, 256, 280
PkrI GCNGC 2 cut(s) 327, 369
PleI GAGTC 2 cut(s) 167, 398
PluTI GGCGCC 1 cut(s) 362
PpsI GAGTC 2 cut(s) 167, 398
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 6 cut(s) 25, 208, 232, 256, 280, 292
PspGI CCWGG 6 cut(s) 25, 208, 232, 256, 280, 292
PspN4I GGNNCC 5 cut(s) 39, 126, 360, 384, 755
PspPI GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 611
SacII CCGCGG 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 831
SatI GCNGC 2 cut(s) 326, 368
Sau3AI GATC 6 cut(s) 55, 124, 352, 387, 409, 478
Sau96I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
SchI GAGTC 2 cut(s) 167, 398
ScrFI CCNGG 7 cut(s) 27, 186, 210, 234, 258, 282, 294
SduI GDGCHC 3 cut(s) 495, 611, 756
SfoI GGCGCC 1 cut(s) 360
Sfr303I CCGCGG 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 455
SinI GGWCC 3 cut(s) 38, 290, 383
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 1 cut(s) 774
SsiI CCGC 7 cut(s) 222, 246, 325, 367, 452, 454, 627
SspDI GGCGCC 1 cut(s) 358
SspMI CTAG 4 cut(s) 378, 401, 540, 780
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 7 cut(s) 25, 184, 208, 232, 256, 280, 292
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 2 cut(s) 111, 463
TaqII GACCGA 1 cut(s) 278
TasI AATT 1 cut(s) 774
TatI WGTACW 1 cut(s) 895
TauI GCSGC 2 cut(s) 328, 370
TfiI GAWTC 3 cut(s) 261, 285, 346
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 616
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 314, 328, 429, 849
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 3 cut(s) 38, 290, 383
XceI RCATGY 1 cut(s) 205
XspI CTAG 4 cut(s) 378, 401, 540, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.