FvH4_5g01160

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016840
Physical Location & Seq
Forward (+)
707974 .. 711046
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01160.t1

Sequence Viewer

Length: 789 bp
ATGGATTTTATTCTCCCCAATATATTAGACCATGACGGTGAGCTGTCGCAGATCGCTTGTGTTCCCTGTGTAGAACACAAGATCCGAGAGAATCATGTATACCCACTCCCACTCCCACTTGGTCCTTCTCATCAAAAGAAAGATCATGTTCATCTCATGAGTCCCAGGCAAATCGACTTTAGCCAGCCGAAGAGAAAAACATCCATCACTTTCGGTGAGATAGATGATGATCAAAACCCAGATCAGGAGAGCAAGAAGGTCAAGAAGATCATGCACAGAGATATAGAACGGCAGCGAAGACAAGAGATGACAACCCTTTATGCCTCTCTACGATCTCATCTCCCTCTTGAATATCTCAAGGGGAAGAGGTCTATATCGGATCATGTGCACCAGGCGGCCAATTACATAAAACATTTACAAAAGGACCTCGAGGAGCTGCGAGAAAAGAAGGATGAACTAAAAAACCAAAGCAACATTTCAGGCTCTAGTACTGCAGTGGTGGAGAATTTGCAGACTCCATCGATAATGGGGGATTCTGTCATATTGGTCAGACCAGCTTGTACAGGAGTGGAGATAGTTGTGAGTACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGGCATACTGGTTTCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAATGTTGATTTATAGCCTTGAAACTGAGGTGATTGATGGGGAAAGCATTGACATTCCTGAGCTCCAAAACAGATTGATTGAAAAATGTACTTCTGGCTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

263

Amino Acids

29.63

Weight (kDa)

6.42

Isoelectric Point (pI)

65.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 88 - 140 7.6e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 428
AccI GTMKAC 1 cut(s) 99
AciI CCGC 1 cut(s) 395
AclWI GGATC 2 cut(s) 76, 387
AcoI YGGCCR 2 cut(s) 396, 669
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 4 cut(s) 490, 562, 586, 772
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 6 cut(s) 350, 595, 615, 704, 764, 784
AjnI CCWGG 2 cut(s) 164, 390
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 5 cut(s) 43, 436, 557, 660, 745
AluI AGCT 5 cut(s) 43, 436, 557, 660, 745
Alw21I GWGCWC 2 cut(s) 390, 747
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 2 cut(s) 76, 387
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 2 cut(s) 396, 669
ApaLI GTGCAC 1 cut(s) 386
ApeKI GCWGC 3 cut(s) 292, 436, 660
ApoI RAATTY 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 122, 424
AsuHPI GGTGA 3 cut(s) 50, 227, 724
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 122, 424
BaeGI GKGCMC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 2 cut(s) 390, 747
BbvI GCAGC 3 cut(s) 304, 423, 647
BccI CCATC 3 cut(s) 212, 526, 713
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 166, 392
BclI TGATCA 1 cut(s) 229
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 492
BisI GCNGC 4 cut(s) 293, 396, 437, 661
BlsI GCNGC 4 cut(s) 294, 397, 438, 662
BmcAI AGTACT 2 cut(s) 490, 586
Bme1390I CCNGG 2 cut(s) 166, 392
Bme18I GGWCC 2 cut(s) 122, 424
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 122, 424
BmrFI CCNGG 2 cut(s) 166, 392
BpiI GAAGAC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 166, 392
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 200, 457
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 699, 732
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 304, 423, 647
BshFI GGCC 2 cut(s) 398, 671
BshVI ATCGAT 1 cut(s) 521
BsiHKAI GWGCWC 2 cut(s) 390, 747
BsiHKCI CYCGRG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 2 cut(s) 398, 671
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 390, 747
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 398, 671
BspCNI CTCAG 2 cut(s) 700, 733
BspDI ATCGAT 1 cut(s) 521
BspHI TCATGA 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 2 cut(s) 76, 387
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 166, 392
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 185, 359
BstAUI TGTACA 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 647, 708, 741
BstF5I GGATG 2 cut(s) 200, 457
BstKTI GATC 8 cut(s) 54, 84, 145, 232, 244, 270, 335, 382
BstMBI GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
BstNI CCWGG 2 cut(s) 166, 392
BstSCI CCNGG 2 cut(s) 164, 390
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 304, 423, 647
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 2 cut(s) 398, 671
BsuTUI ATCGAT 1 cut(s) 521
BtsCI GGATG 2 cut(s) 200, 457
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 122, 424
ClaI ATCGAT 1 cut(s) 521
Csp6I GTAC 4 cut(s) 489, 561, 585, 771
CviAII CATG 6 cut(s) 32, 95, 146, 157, 271, 383
CviQI GTAC 4 cut(s) 489, 561, 585, 771
DdeI CTNAG 3 cut(s) 647, 708, 741
DpnI GATC 8 cut(s) 53, 83, 144, 231, 243, 269, 334, 381
DpnII GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
EaeI YGGCCR 2 cut(s) 396, 669
Eam1104I CTCTTC 2 cut(s) 185, 359
EarI CTCTTC 2 cut(s) 185, 359
Ecl136II GAGCTC 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 122, 424
Eco53kI GAGCTC 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 164, 390
EcoT38I GRGCYC 1 cut(s) 747
FaeI CATG 6 cut(s) 35, 98, 149, 160, 274, 386
FaqI GGGAC 1 cut(s) 147
FatI CATG 6 cut(s) 31, 94, 145, 156, 270, 382
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 293, 396, 437, 661
FokI GGATG 2 cut(s) 187, 464
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 4 cut(s) 293, 396, 437, 661
FspBI CTAG 1 cut(s) 486
GluI GCNGC 4 cut(s) 293, 396, 437, 661
HaeIII GGCC 2 cut(s) 398, 671
Hin1II CATG 6 cut(s) 35, 98, 149, 160, 274, 386
HinfI GANTC 4 cut(s) 91, 160, 514, 533
HphI GGTGA 3 cut(s) 50, 227, 724
Hpy166II GTNNAC 2 cut(s) 100, 388
Hpy188I TCNGA 4 cut(s) 86, 379, 551, 640
Hpy188III TCNNGA 6 cut(s) 157, 245, 262, 347, 615, 740
Hpy8I GTNNAC 2 cut(s) 100, 388
HpyAV CCTTC 4 cut(s) 135, 250, 442, 635
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 274, 388, 494, 511, 663
HpyF3I CTNAG 3 cut(s) 647, 708, 741
Hsp92II CATG 6 cut(s) 35, 98, 149, 160, 274, 386
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
LmnI GCTCC 2 cut(s) 433, 750
Lsp1109I GCAGC 3 cut(s) 304, 423, 647
MaeI CTAG 1 cut(s) 486
MalI GATC 8 cut(s) 53, 83, 144, 231, 243, 269, 334, 381
MboI GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
MboII GAAGA 4 cut(s) 202, 277, 309, 376
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 390, 747
MluCI AATT 2 cut(s) 400, 505
MlyI GAGTC 2 cut(s) 169, 508
MnlI CCTC 7 cut(s) 334, 354, 360, 424, 437, 618, 703
MslI CAYNNNNRTG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 166, 392
MvaI CCWGG 2 cut(s) 166, 392
NdeII GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
NlaIII CATG 6 cut(s) 35, 98, 149, 160, 274, 386
NmeAIII GCCGAG 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 428
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 2 cut(s) 91, 533
PkrI GCNGC 4 cut(s) 294, 397, 438, 662
PleI GAGTC 2 cut(s) 168, 508
PpsI GAGTC 2 cut(s) 168, 508
PpuMI RGGWCCY 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 164, 390
PspGI CCWGG 2 cut(s) 164, 390
PspPI GGNCC 2 cut(s) 122, 424
PspPPI RGGWCCY 1 cut(s) 424
PspXI VCTCGAGB 1 cut(s) 428
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 4 cut(s) 490, 562, 586, 772
RsaNI GTAC 4 cut(s) 489, 561, 585, 771
RseI CAYNNNNRTG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 747
SatI GCNGC 4 cut(s) 293, 396, 437, 661
Sau3AI GATC 8 cut(s) 51, 81, 142, 229, 241, 267, 332, 379
Sau96I GGNCC 2 cut(s) 122, 424
ScaI AGTACT 2 cut(s) 490, 586
SchI GAGTC 2 cut(s) 169, 508
ScrFI CCNGG 2 cut(s) 166, 392
SduI GDGCHC 2 cut(s) 390, 747
SetI ASST 9 cut(s) 45, 261, 371, 429, 438, 559, 662, 714, 747
SfcI CTRYAG 1 cut(s) 492
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 2 cut(s) 122, 424
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 356, 428
SmoI CTYRAG 2 cut(s) 356, 428
Sse9I AATT 2 cut(s) 400, 505
SsiI CCGC 1 cut(s) 395
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 164, 390
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 174, 429, 521
TasI AATT 2 cut(s) 400, 505
TatI WGTACW 4 cut(s) 488, 560, 584, 770
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 91, 533
TscAI CASTG 1 cut(s) 501
TseI GCWGC 3 cut(s) 292, 436, 660
TspDTI ATGAA 2 cut(s) 140, 468
TspRI CASTG 1 cut(s) 501
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 122, 424
XapI RAATTY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 486
ZrmI AGTACT 2 cut(s) 490, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.