RLG00000003756

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016840
Physical Location & Seq
Forward (+)
52318835 .. 52319856
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003756

Sequence Viewer

Length: 813 bp
ATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATCATGTACACCCACTCCCACTCCCACTCCCACTGAATCCTCCTCCTAATCAAAACGAAGATCCTCATAATTATGATCGTCTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGATGATCAAAACCCAAAGGAGAGCAAGAAGGTCAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCACTCTACGATCTCATCTCCCTCTTGAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCTGCAAGAAAAGAGGGATGAATTGAAAAAACAATACAATATTTCAGGCTCTAGTACTGCAGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGGGGATTCTGTTATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAAGGTCGCTTTATACCCTTGAATCTGAGGTGAGTGATGGGGGAAGCATTGATATTCCTGAGCTCCAAAACAGATTGATAAACAAATGTACTTCTGAGCCTGGCTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

271

Amino Acids

30.65

Weight (kDa)

7.15

Isoelectric Point (pI)

68.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 94 - 146 2.5e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 414
AclWI GGATC 3 cut(s) 77, 164, 405
AcoI YGGCCR 2 cut(s) 327, 687
AcsI RAATTY 1 cut(s) 523
AfaI GTAC 3 cut(s) 117, 508, 790
AgsI TTSAA 7 cut(s) 29, 368, 478, 613, 633, 722, 808
AjnI CCWGG 2 cut(s) 408, 799
AluBI AGCT 8 cut(s) 41, 61, 198, 454, 575, 596, 678, 763
AluI AGCT 8 cut(s) 41, 61, 198, 454, 575, 596, 678, 763
Alw21I GWGCWC 2 cut(s) 408, 765
Alw26I GTCTC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 404
AlwI GGATC 3 cut(s) 77, 164, 405
AoxI GGCC 3 cut(s) 327, 411, 687
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 454, 678
ApoI RAATTY 1 cut(s) 523
AsuHPI GGTGA 3 cut(s) 68, 248, 742
BaeGI GKGCMC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 329
BanII GRGCYC 1 cut(s) 765
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 408, 765
BbvI GCAGC 2 cut(s) 441, 665
BccI CCATC 2 cut(s) 233, 731
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 410, 801
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 3 cut(s) 414, 455, 679
BlsI GCNGC 3 cut(s) 415, 456, 680
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 2 cut(s) 410, 801
BmrFI CCNGG 2 cut(s) 410, 801
BmsI GCATC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 249
BsaXI ACNNNNNCTCC 8 cut(s) 108, 114, 120, 138, 144, 150, 576, 606
Bse1I ACTGG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 2 cut(s) 410, 801
BseGI GGATG 2 cut(s) 221, 475
BseJI GATNNNNATC 1 cut(s) 249
BseMII CTCAG 3 cut(s) 717, 750, 786
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 2 cut(s) 141, 464
BseSI GKGCMC 1 cut(s) 408
BseXI GCAGC 2 cut(s) 441, 665
BshFI GGCC 3 cut(s) 329, 413, 689
BsiHKAI GWGCWC 2 cut(s) 408, 765
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsnI GGCC 3 cut(s) 329, 413, 689
Bsp1286I GDGCHC 2 cut(s) 408, 765
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
BspACI CCGC 2 cut(s) 67, 414
BspANI GGCC 3 cut(s) 329, 413, 689
BspCNI CTCAG 3 cut(s) 718, 751, 787
BspHI TCATGA 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 3 cut(s) 77, 164, 405
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 654
BssMI GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 410, 801
Bst4CI ACNGT 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 4 cut(s) 665, 726, 759, 795
BstF5I GGATG 2 cut(s) 221, 475
BstKTI GATC 7 cut(s) 72, 172, 187, 253, 288, 353, 400
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
BstNI CCWGG 2 cut(s) 410, 801
BstSCI CCNGG 2 cut(s) 408, 799
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 441, 665
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 2 cut(s) 69, 169
BstYI RGATCY 2 cut(s) 69, 169
BsuRI GGCC 3 cut(s) 329, 413, 689
BtsCI GGATG 2 cut(s) 221, 475
BtsI GCAGTG 1 cut(s) 536
BtsIMutI CAGTG 2 cut(s) 140, 536
Cac8I GCNNGC 1 cut(s) 206
CciI TCATGA 1 cut(s) 192
Csp6I GTAC 3 cut(s) 116, 507, 789
CviAII CATG 5 cut(s) 50, 113, 193, 289, 401
CviQI GTAC 3 cut(s) 116, 507, 789
DdeI CTNAG 4 cut(s) 665, 726, 759, 795
DpnI GATC 7 cut(s) 71, 171, 186, 252, 287, 352, 399
DpnII GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
EaeI YGGCCR 2 cut(s) 327, 687
Ecl136II GAGCTC 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 408, 799
EcoT38I GRGCYC 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 5 cut(s) 53, 116, 196, 292, 404
FatI CATG 5 cut(s) 49, 112, 192, 288, 400
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 414, 455, 679
FokI GGATG 2 cut(s) 208, 482
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 3 cut(s) 414, 455, 679
FspBI CTAG 1 cut(s) 504
GluI GCNGC 3 cut(s) 414, 455, 679
HaeIII GGCC 3 cut(s) 329, 413, 689
Hin1II CATG 5 cut(s) 53, 116, 196, 292, 404
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 109, 145, 551, 722
HphI GGTGA 3 cut(s) 68, 248, 742
Hpy166II GTNNAC 2 cut(s) 118, 406
Hpy188I TCNGA 5 cut(s) 104, 397, 569, 727, 796
Hpy188III TCNNGA 5 cut(s) 193, 280, 365, 633, 758
Hpy8I GTNNAC 2 cut(s) 118, 406
HpyAV CCTTC 2 cut(s) 268, 653
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 6 cut(s) 292, 406, 457, 512, 656, 681
HpyF3I CTNAG 4 cut(s) 665, 726, 759, 795
Hsp92II CATG 5 cut(s) 53, 116, 196, 292, 404
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
LmnI GCTCC 2 cut(s) 451, 768
LpnPI CCDG 9 cut(s) 97, 218, 395, 422, 483, 585, 635, 771, 786
Lsp1109I GCAGC 2 cut(s) 441, 665
LweI GCATC 1 cut(s) 230
MaeI CTAG 1 cut(s) 504
MalI GATC 7 cut(s) 71, 171, 186, 252, 287, 352, 399
MboI GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
MboII GAAGA 3 cut(s) 179, 295, 327
MflI RGATCY 2 cut(s) 69, 169
MhlI GDGCHC 2 cut(s) 408, 765
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 5 cut(s) 29, 178, 418, 473, 523
MluNI TGGCCA 1 cut(s) 329
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MslI CAYNNNNRTG 2 cut(s) 54, 180
Msp20I TGGCCA 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 410, 801
MvaI CCWGG 2 cut(s) 410, 801
NdeII GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
NlaIII CATG 5 cut(s) 53, 116, 196, 292, 404
NmeAIII GCCGAG 1 cut(s) 665
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 4 cut(s) 109, 145, 551, 722
PkrI GCNGC 3 cut(s) 415, 456, 680
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 408, 799
PspGI CCWGG 2 cut(s) 408, 799
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 69, 169
RsaI GTAC 3 cut(s) 117, 508, 790
RsaNI GTAC 3 cut(s) 116, 507, 789
RseI CAYNNNNRTG 2 cut(s) 54, 180
SacI GAGCTC 1 cut(s) 765
SatI GCNGC 3 cut(s) 414, 455, 679
Sau3AI GATC 7 cut(s) 69, 169, 184, 250, 285, 350, 397
ScaI AGTACT 1 cut(s) 508
ScrFI CCNGG 2 cut(s) 410, 801
SduI GDGCHC 2 cut(s) 408, 765
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 54, 180
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 5 cut(s) 29, 178, 418, 473, 523
SsiI CCGC 2 cut(s) 67, 414
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 408, 799
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 447
TasI AATT 5 cut(s) 29, 178, 418, 473, 523
TatI WGTACW 3 cut(s) 115, 506, 788
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 4 cut(s) 109, 145, 551, 722
TscAI CASTG 2 cut(s) 147, 536
TseI GCWGC 2 cut(s) 454, 678
TspDTI ATGAA 2 cut(s) 486, 525
TspRI CASTG 2 cut(s) 147, 536
VneI GTGCAC 1 cut(s) 404
XapI RAATTY 1 cut(s) 523
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.