Rh7AG182700

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016840
Physical Location & Seq
Reverse (-)
16250192 .. 16251468
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG182700.1

Sequence Viewer

Length: 768 bp
ATGCAAGCTGGATACAGATTACATGATCGAAAGAGAAGAAGATTAGGATTTGGAGCTTCAAACATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATAATCATGTACACCCACTCCCGCTCCCACTGAATCCTCCTCCTAATCAAAAGGAAGATCCTCATAATTATGATCGTTTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGGGATAGATGATGATCAAAACCCAAAGGAGAGCAAGAAGGTAAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCAATCTACGATCTCATCTCCCTCTTGAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCTGCAAGAAAAGAGGGATGAATTGAAAAAACAATACAATATTTCAGCCTCTAGTACTGCAGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGGGGATTCTGTCATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTGGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

255

Amino Acids

29.17

Weight (kDa)

9.49

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 114 - 166 3.9e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 196
AciI CCGC 3 cut(s) 130, 194, 474
AclWI GGATC 3 cut(s) 140, 224, 465
AcoI YGGCCR 2 cut(s) 387, 747
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 2 cut(s) 183, 568
AgsI TTSAA 6 cut(s) 60, 92, 428, 538, 673, 693
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 9 cut(s) 8, 56, 104, 124, 258, 514, 635, 656, 738
AluI AGCT 9 cut(s) 8, 56, 104, 124, 258, 514, 635, 656, 738
Alw21I GWGCWC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 3 cut(s) 140, 224, 465
AoxI GGCC 3 cut(s) 387, 471, 747
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 514, 738
ApoI RAATTY 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 389
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 501, 725
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 5
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 570
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 3 cut(s) 474, 515, 739
BlsI GCNGC 3 cut(s) 475, 516, 740
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 309
BsaXI ACNNNNNCTCC 6 cut(s) 174, 180, 204, 210, 636, 666
Bse1I ACTGG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 281, 535
BseJI GATNNNNATC 1 cut(s) 309
BseNI ACTGG 1 cut(s) 714
BseRI GAGGAG 2 cut(s) 201, 524
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 501, 725
BshFI GGCC 3 cut(s) 389, 473, 749
BsiHKAI GWGCWC 1 cut(s) 468
BsnI GGCC 3 cut(s) 389, 473, 749
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
BspACI CCGC 3 cut(s) 130, 194, 474
BspANI GGCC 3 cut(s) 389, 473, 749
BspHI TCATGA 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 3 cut(s) 140, 224, 465
BsrBI CCGCTC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 181
BsrI ACTGG 1 cut(s) 714
BssMI GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 6, 266
BstF5I GGATG 2 cut(s) 281, 535
BstKTI GATC 8 cut(s) 28, 135, 232, 247, 313, 348, 413, 460
BstMBI GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 501, 725
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 2 cut(s) 132, 229
BstYI RGATCY 2 cut(s) 132, 229
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 3 cut(s) 389, 473, 749
BtsCI GGATG 2 cut(s) 281, 535
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 200, 596
Cac8I GCNNGC 2 cut(s) 6, 266
CciI TCATGA 1 cut(s) 252
Csp6I GTAC 2 cut(s) 182, 567
CviAII CATG 7 cut(s) 23, 64, 113, 179, 253, 349, 461
CviQI GTAC 2 cut(s) 182, 567
DpnI GATC 8 cut(s) 27, 134, 231, 246, 312, 347, 412, 459
DpnII GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
EaeI YGGCCR 2 cut(s) 387, 747
EcoRII CCWGG 1 cut(s) 468
FaeI CATG 7 cut(s) 26, 67, 116, 182, 256, 352, 464
FatI CATG 7 cut(s) 22, 63, 112, 178, 252, 348, 460
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 474, 515, 739
FokI GGATG 2 cut(s) 268, 542
Fsp4HI GCNGC 3 cut(s) 474, 515, 739
FspBI CTAG 1 cut(s) 564
GluI GCNGC 3 cut(s) 474, 515, 739
HaeIII GGCC 3 cut(s) 389, 473, 749
Hin1II CATG 7 cut(s) 26, 67, 116, 182, 256, 352, 464
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 2 cut(s) 205, 611
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 184, 466
Hpy188I TCNGA 3 cut(s) 167, 457, 629
Hpy188III TCNNGA 3 cut(s) 253, 425, 693
Hpy8I GTNNAC 2 cut(s) 184, 466
HpyAV CCTTC 2 cut(s) 328, 713
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 7 cut(s) 4, 352, 466, 517, 572, 716, 741
Hsp92II CATG 7 cut(s) 26, 67, 116, 182, 256, 352, 464
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
LmnI GCTCC 3 cut(s) 53, 201, 511
LpnPI CCDG 6 cut(s) 160, 278, 455, 482, 645, 695
Lsp1109I GCAGC 2 cut(s) 501, 725
LweI GCATC 1 cut(s) 290
MaeI CTAG 1 cut(s) 564
MalI GATC 8 cut(s) 27, 134, 231, 246, 312, 347, 412, 459
MbiI CCGCTC 1 cut(s) 196
MboI GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
MboII GAAGA 5 cut(s) 48, 51, 239, 355, 387
MflI RGATCY 2 cut(s) 132, 229
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 5 cut(s) 92, 238, 478, 533, 583
MluNI TGGCCA 1 cut(s) 389
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MslI CAYNNNNRTG 2 cut(s) 117, 240
Msp20I TGGCCA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
NdeII GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
NlaIII CATG 7 cut(s) 26, 67, 116, 182, 256, 352, 464
NmeAIII GCCGAG 1 cut(s) 725
PagI TCATGA 1 cut(s) 252
PfeI GAWTC 2 cut(s) 205, 611
PkrI GCNGC 3 cut(s) 475, 516, 740
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 132, 229
RsaI GTAC 2 cut(s) 183, 568
RsaNI GTAC 2 cut(s) 182, 567
RseI CAYNNNNRTG 2 cut(s) 117, 240
SatI GCNGC 3 cut(s) 474, 515, 739
Sau3AI GATC 8 cut(s) 25, 132, 229, 244, 310, 345, 410, 457
ScaI AGTACT 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 117, 240
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 92, 238, 478, 533, 583
SsiI CCGC 3 cut(s) 130, 194, 474
SspI AATATT 1 cut(s) 553
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 28, 507
TasI AATT 5 cut(s) 92, 238, 478, 533, 583
TatI WGTACW 2 cut(s) 181, 566
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 205, 611
TscAI CASTG 2 cut(s) 207, 596
TseI GCWGC 2 cut(s) 514, 738
TspDTI ATGAA 3 cut(s) 241, 546, 585
TspRI CASTG 2 cut(s) 207, 596
VneI GTGCAC 1 cut(s) 464
XapI RAATTY 1 cut(s) 583
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.