Rh7BG185900

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016840
Physical Location & Seq
Reverse (-)
14911381 .. 14912981
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG185900.1

Sequence Viewer

Length: 876 bp
ATGCAAGCTGGATACAGATTATATGATCGAAAGAGAAGAAGATTAGGATTTGGAGCTTCAAACATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATCATGTACACCCACTCCCACTCCCACTCCCACTGAATCCTCCTCCTAATCAAAAGGAAGATCCTCATAATTATGATCGTTTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGATGATCAAAACCCAAAGGAGAGCAAGAAGGTCAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCACTCTACGATCTCATCTCCCTCTTGAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCTGCAAGAAAAGAGGGATGAATTGAAAAAACAATACAATATTTCAGGCTCTAGTACTGCAGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGGGGATTCTGTCATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAAGGTTGCTTTATACCCTTGAATCTGAGGTGAGTGATGGGGGAAGCATTGATATTCCTGAGCTCCAAAACAGATTGATAAAAAAATGTACTTCTGAGCCTGGCTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

9.08

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 115 - 167 2.9e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 477
AclWI GGATC 3 cut(s) 140, 227, 468
AcoI YGGCCR 2 cut(s) 390, 750
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 3 cut(s) 180, 571, 853
AgsI TTSAA 8 cut(s) 60, 92, 431, 541, 676, 696, 785, 871
AjnI CCWGG 2 cut(s) 471, 862
Alw21I GWGCWC 2 cut(s) 471, 828
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 3 cut(s) 140, 227, 468
AoxI GGCC 3 cut(s) 390, 474, 750
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 517, 741
ApoI RAATTY 1 cut(s) 586
AsuHPI GGTGA 3 cut(s) 131, 311, 805
BaeGI GKGCMC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 471, 828
BbvI GCAGC 2 cut(s) 504, 728
BccI CCATC 2 cut(s) 296, 794
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 473, 864
BciVI GTATCC 1 cut(s) 5
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 573
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 3 cut(s) 477, 518, 742
BlsI GCNGC 3 cut(s) 478, 519, 743
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 2 cut(s) 473, 864
BmrFI CCNGG 2 cut(s) 473, 864
BmsI GCATC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 312
BsaXI ACNNNNNCTCC 8 cut(s) 171, 177, 183, 201, 207, 213, 639, 669
Bse1I ACTGG 1 cut(s) 717
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 2 cut(s) 473, 864
BseGI GGATG 2 cut(s) 284, 538
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 3 cut(s) 780, 813, 849
BseNI ACTGG 1 cut(s) 717
BseRI GAGGAG 2 cut(s) 204, 527
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 2 cut(s) 504, 728
BshFI GGCC 3 cut(s) 392, 476, 752
BsiHKAI GWGCWC 2 cut(s) 471, 828
BsnI GGCC 3 cut(s) 392, 476, 752
Bsp1286I GDGCHC 2 cut(s) 471, 828
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
BspACI CCGC 2 cut(s) 130, 477
BspANI GGCC 3 cut(s) 392, 476, 752
BspCNI CTCAG 3 cut(s) 781, 814, 850
BspHI TCATGA 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 3 cut(s) 140, 227, 468
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 717
BssMI GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 473, 864
Bst4CI ACNGT 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 6, 269
BstDEI CTNAG 4 cut(s) 728, 789, 822, 858
BstF5I GGATG 2 cut(s) 284, 538
BstKTI GATC 8 cut(s) 28, 135, 235, 250, 316, 351, 416, 463
BstMBI GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
BstNI CCWGG 2 cut(s) 473, 864
BstSCI CCNGG 2 cut(s) 471, 862
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 504, 728
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 2 cut(s) 132, 232
BstYI RGATCY 2 cut(s) 132, 232
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 3 cut(s) 392, 476, 752
BtsCI GGATG 2 cut(s) 284, 538
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 2 cut(s) 203, 599
Cac8I GCNNGC 2 cut(s) 6, 269
CciI TCATGA 1 cut(s) 255
Csp6I GTAC 3 cut(s) 179, 570, 852
CviAII CATG 6 cut(s) 64, 113, 176, 256, 352, 464
CviQI GTAC 3 cut(s) 179, 570, 852
DdeI CTNAG 4 cut(s) 728, 789, 822, 858
DpnI GATC 8 cut(s) 27, 134, 234, 249, 315, 350, 415, 462
DpnII GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
EaeI YGGCCR 2 cut(s) 390, 750
Ecl136II GAGCTC 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 826
EcoRII CCWGG 2 cut(s) 471, 862
EcoT38I GRGCYC 1 cut(s) 828
FaeI CATG 6 cut(s) 67, 116, 179, 259, 355, 467
FatI CATG 6 cut(s) 63, 112, 175, 255, 351, 463
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 477, 518, 742
FokI GGATG 2 cut(s) 271, 545
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 3 cut(s) 477, 518, 742
FspBI CTAG 1 cut(s) 567
GluI GCNGC 3 cut(s) 477, 518, 742
HaeIII GGCC 3 cut(s) 392, 476, 752
Hin1II CATG 6 cut(s) 67, 116, 179, 259, 355, 467
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 4 cut(s) 172, 208, 614, 785
HphI GGTGA 3 cut(s) 131, 311, 805
Hpy166II GTNNAC 2 cut(s) 181, 469
Hpy188I TCNGA 5 cut(s) 167, 460, 632, 790, 859
Hpy188III TCNNGA 5 cut(s) 256, 343, 428, 696, 821
Hpy8I GTNNAC 2 cut(s) 181, 469
HpyAV CCTTC 2 cut(s) 331, 716
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 7 cut(s) 4, 355, 469, 520, 575, 719, 744
HpyF3I CTNAG 4 cut(s) 728, 789, 822, 858
Hsp92II CATG 6 cut(s) 67, 116, 179, 259, 355, 467
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
LmnI GCTCC 3 cut(s) 53, 514, 831
LpnPI CCDG 9 cut(s) 160, 281, 458, 485, 546, 648, 698, 834, 849
Lsp1109I GCAGC 2 cut(s) 504, 728
LweI GCATC 1 cut(s) 293
MaeI CTAG 1 cut(s) 567
MalI GATC 8 cut(s) 27, 134, 234, 249, 315, 350, 415, 462
MboI GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
MboII GAAGA 5 cut(s) 48, 51, 242, 358, 390
MflI RGATCY 2 cut(s) 132, 232
MhlI GDGCHC 2 cut(s) 471, 828
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 5 cut(s) 92, 241, 481, 536, 586
MluNI TGGCCA 1 cut(s) 392
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MslI CAYNNNNRTG 2 cut(s) 117, 243
Msp20I TGGCCA 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 473, 864
MvaI CCWGG 2 cut(s) 473, 864
NdeII GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
NlaIII CATG 6 cut(s) 67, 116, 179, 259, 355, 467
NmeAIII GCCGAG 1 cut(s) 728
PagI TCATGA 1 cut(s) 255
PfeI GAWTC 4 cut(s) 172, 208, 614, 785
PkrI GCNGC 3 cut(s) 478, 519, 743
Psp124BI GAGCTC 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 471, 862
PspGI CCWGG 2 cut(s) 471, 862
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 132, 232
RsaI GTAC 3 cut(s) 180, 571, 853
RsaNI GTAC 3 cut(s) 179, 570, 852
RseI CAYNNNNRTG 2 cut(s) 117, 243
SacI GAGCTC 1 cut(s) 828
SatI GCNGC 3 cut(s) 477, 518, 742
Sau3AI GATC 8 cut(s) 25, 132, 232, 247, 313, 348, 413, 460
ScaI AGTACT 1 cut(s) 571
ScrFI CCNGG 2 cut(s) 473, 864
SduI GDGCHC 2 cut(s) 471, 828
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 117, 243
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 5 cut(s) 92, 241, 481, 536, 586
SsiI CCGC 2 cut(s) 130, 477
SspI AATATT 1 cut(s) 556
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 2 cut(s) 471, 862
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 28, 510
TasI AATT 5 cut(s) 92, 241, 481, 536, 586
TatI WGTACW 3 cut(s) 178, 569, 851
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 4 cut(s) 172, 208, 614, 785
TscAI CASTG 2 cut(s) 210, 599
TseI GCWGC 2 cut(s) 517, 741
TspDTI ATGAA 3 cut(s) 244, 549, 588
TspRI CASTG 2 cut(s) 210, 599
VneI GTGCAC 1 cut(s) 467
XapI RAATTY 1 cut(s) 586
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.