RchiOBHm_Chr7g0199961

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016840
Physical Location & Seq
Reverse (-)
17924260 .. 17925106
847 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17895

Sequence Viewer

Length: 765 bp
ATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATCATGCACACCCACTCCCGCACCCACTGAATCCTCCTCCTAATCAAAAGGAAGATCCTCATAACTATGATCGTTTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGCTGATCAAAACCCAAAGGAGAGCAAGAAGGTAAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCAATCTACGATCTCATCTCCCTCTTGAATATCTCAAGCAAAAAAAAATCTTATTCTTGTTTTGGCTTCAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCAGCAAAAAAAGAGGGATGAATTGAAAAAACAACACAATATTTCAGGCTCTAGTACTGCAGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGAGGATTCTGTCATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAACGGTTGCTTTATACCCTTGAATCTGAGGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

254

Amino Acids

29.29

Weight (kDa)

9.08

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 92 - 155 1.2e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 67, 128, 441
AclWI GGATC 3 cut(s) 77, 158, 432
AcoI YGGCCR 2 cut(s) 321, 714
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 2 cut(s) 535, 759
AgsI TTSAA 6 cut(s) 29, 362, 505, 640, 660, 749
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 6 cut(s) 41, 61, 192, 602, 623, 705
AluI AGCT 6 cut(s) 41, 61, 192, 602, 623, 705
Alw21I GWGCWC 1 cut(s) 435
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 3 cut(s) 77, 158, 432
AoxI GGCC 3 cut(s) 321, 438, 714
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 481, 705
ApoI RAATTY 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 68, 242
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 323
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 493, 692
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 437
BclI TGATCA 1 cut(s) 244
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 3 cut(s) 441, 482, 706
BlsI GCNGC 3 cut(s) 442, 483, 707
BmcAI AGTACT 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 2 cut(s) 224, 229
BpiI GAAGAC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 243
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 603, 633
Bse1I ACTGG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 437
BseGI GGATG 2 cut(s) 215, 502
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 2 cut(s) 135, 491
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 2 cut(s) 493, 692
BshFI GGCC 3 cut(s) 323, 440, 716
BsiHKAI GWGCWC 1 cut(s) 435
BsnI GGCC 3 cut(s) 323, 440, 716
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
BspACI CCGC 3 cut(s) 67, 128, 441
BspANI GGCC 3 cut(s) 323, 440, 716
BspCNI CTCAG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 77, 158, 432
BsrI ACTGG 1 cut(s) 681
BssMI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 56, 732, 762
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 692, 753
BstF5I GGATG 2 cut(s) 215, 502
BstKTI GATC 7 cut(s) 72, 166, 181, 247, 282, 347, 427
BstMBI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 493, 692
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 69, 163
BstYI RGATCY 2 cut(s) 69, 163
BsuRI GGCC 3 cut(s) 323, 440, 716
BtsCI GGATG 2 cut(s) 215, 502
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 134, 563
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 186
Csp6I GTAC 2 cut(s) 534, 758
CviAII CATG 5 cut(s) 50, 113, 187, 283, 428
CviQI GTAC 2 cut(s) 534, 758
DdeI CTNAG 2 cut(s) 692, 753
DpnI GATC 7 cut(s) 71, 165, 180, 246, 281, 346, 426
DpnII GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
EaeI YGGCCR 2 cut(s) 321, 714
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 435
FaeI CATG 5 cut(s) 53, 116, 190, 286, 431
FatI CATG 5 cut(s) 49, 112, 186, 282, 427
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 441, 482, 706
FokI GGATG 2 cut(s) 202, 509
Fsp4HI GCNGC 3 cut(s) 441, 482, 706
FspBI CTAG 1 cut(s) 531
GluI GCNGC 3 cut(s) 441, 482, 706
HaeIII GGCC 3 cut(s) 323, 440, 716
Hin1II CATG 5 cut(s) 53, 116, 190, 286, 431
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 109, 139, 578, 749
HphI GGTGA 2 cut(s) 68, 242
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 4 cut(s) 104, 424, 596, 754
Hpy188III TCNNGA 3 cut(s) 187, 359, 660
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 262, 680
HpyCH4III ACNGT 3 cut(s) 56, 732, 762
HpyCH4V TGCA 6 cut(s) 116, 286, 433, 539, 683, 708
HpyF3I CTNAG 2 cut(s) 692, 753
Hsp92II CATG 5 cut(s) 53, 116, 190, 286, 431
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
LmnI GCTCC 1 cut(s) 478
LpnPI CCDG 8 cut(s) 97, 212, 389, 422, 449, 510, 612, 662
Lsp1109I GCAGC 2 cut(s) 493, 692
LweI GCATC 2 cut(s) 224, 229
MaeI CTAG 1 cut(s) 531
MalI GATC 7 cut(s) 71, 165, 180, 246, 281, 346, 426
MboI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
MboII GAAGA 3 cut(s) 173, 289, 321
MflI RGATCY 2 cut(s) 69, 163
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 29, 445, 500, 550
MluNI TGGCCA 1 cut(s) 323
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 54, 174
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 437
NdeII GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
NlaIII CATG 5 cut(s) 53, 116, 190, 286, 431
NmeAIII GCCGAG 1 cut(s) 692
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 4 cut(s) 109, 139, 578, 749
PkrI GCNGC 3 cut(s) 442, 483, 707
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 2 cut(s) 69, 163
RsaI GTAC 2 cut(s) 535, 759
RsaNI GTAC 2 cut(s) 534, 758
RseI CAYNNNNRTG 2 cut(s) 54, 174
SatI GCNGC 3 cut(s) 441, 482, 706
Sau3AI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 424
ScaI AGTACT 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 2 cut(s) 224, 229
SfcI CTRYAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 54, 174
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 29, 445, 500, 550
SsiI CCGC 3 cut(s) 67, 128, 441
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 56, 732, 762
TaqI TCGA 1 cut(s) 474
TasI AATT 4 cut(s) 29, 445, 500, 550
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 4 cut(s) 109, 139, 578, 749
TscAI CASTG 2 cut(s) 141, 563
TseI GCWGC 2 cut(s) 481, 705
TspDTI ATGAA 3 cut(s) 175, 513, 552
TspRI CASTG 2 cut(s) 141, 563
VneI GTGCAC 1 cut(s) 431
XapI RAATTY 1 cut(s) 550
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.