Rroxscaffold_7G00207590

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016840
Physical Location & Seq
Forward (+)
57512213 .. 57513220
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207590.1

Sequence Viewer

Length: 1008 bp
ATGCAAGCTGGATGCAGATTACATGATCGAAAGAGAAGAAGATTAGGATTTGGAGCTTCAAACATGGATTTTATTCCCTCCAATATATTTCAGTTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCGGAGAGAATCATGTACACCCACTCCCACTCCCACCGAATCCTCCTTCTAATCAAAAGGAAGATCCTCATAATTATGATCGTCTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGATGATCAAAACCCAAAGGAGAGCAAGAAGGTCAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCACTCTACGATCTCATCTCCCTCTTAAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATCAAACATATACAAAAGAATATCGAGGAGCTGCAAGAAAAGAGGGATGAATTGAAAAAACAATACAATATTTCGGGCTCTAGTACTGCGGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGGGGATTCTGTCATATTGGTTAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGGATAGTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCGGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAAGGTTGCTTTATACCCTTGAATGCGAGGTGAGTGATGGGGGAAGCATTGATATTCACGAGCTCCAAAACAGATTGATAAAAAATTGTACTTCGAGCACGGCTTCAAATAAGGTGATCAATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCTGCCTTGAAGACGCAGCGGGATTGAAGGTGAGTAAACCTCACATGGTTCATATTACGAACCGAGTTTTATTTATTTATTTTCTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

335

Amino Acids

38.11

Weight (kDa)

9.11

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 113 - 165 3.1e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 130, 471, 569, 713, 935
AclWI GGATC 4 cut(s) 140, 221, 462, 912
AcoI YGGCCR 2 cut(s) 384, 744
AcsI RAATTY 1 cut(s) 580
AfaI GTAC 3 cut(s) 180, 565, 847
AgsI TTSAA 8 cut(s) 60, 535, 670, 690, 779, 864, 926, 943
AjnI CCWGG 1 cut(s) 465
Alw21I GWGCWC 3 cut(s) 465, 822, 857
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 4 cut(s) 140, 221, 462, 912
AoxI GGCC 3 cut(s) 384, 468, 744
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 4 cut(s) 511, 735, 918, 932
ApoI RAATTY 1 cut(s) 580
AsuHPI GGTGA 5 cut(s) 131, 305, 799, 883, 958
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 2 cut(s) 560, 822
BauI CACGAG 2 cut(s) 138, 815
BbsI GAAGAC 2 cut(s) 379, 933
Bbv12I GWGCWC 3 cut(s) 465, 822, 857
BbvI GCAGC 4 cut(s) 498, 722, 905, 944
BccI CCATC 3 cut(s) 290, 788, 882
BceAI ACGGC 2 cut(s) 380, 873
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 2 cut(s) 307, 873
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 561
BisI GCNGC 5 cut(s) 471, 512, 736, 919, 933
BlsI GCNGC 5 cut(s) 472, 513, 737, 920, 934
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 2, 287
BpiI GAAGAC 2 cut(s) 379, 933
BplI GAGNNNNNCTC 2 cut(s) 940, 972
BpuEI CTTGAG 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 306
BsaXI ACNNNNNCTCC 6 cut(s) 171, 177, 201, 207, 633, 663
Bse1I ACTGG 1 cut(s) 711
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 467
BseGI GGATG 3 cut(s) 17, 278, 532
BseJI GATNNNNATC 1 cut(s) 306
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 4 cut(s) 498, 722, 905, 944
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 3 cut(s) 386, 470, 746
BsiEI CGRYCG 1 cut(s) 900
BsiHKAI GWGCWC 3 cut(s) 465, 822, 857
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 3 cut(s) 386, 470, 746
Bsp1286I GDGCHC 4 cut(s) 465, 560, 822, 857
Bsp1407I TGTACA 1 cut(s) 178
BspACI CCGC 5 cut(s) 130, 471, 569, 713, 935
BspANI GGCC 3 cut(s) 386, 470, 746
BspHI TCATGA 1 cut(s) 249
BspPI GGATC 4 cut(s) 140, 221, 462, 912
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 711
BssSI CACGAG 2 cut(s) 138, 815
Bst2BI CACGAG 2 cut(s) 138, 815
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 6, 263
BstDEI CTNAG 1 cut(s) 722
BstF5I GGATG 3 cut(s) 17, 278, 532
BstMAI GTCTC 1 cut(s) 251
BstMCI CGRYCG 1 cut(s) 900
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 498, 722, 905, 944
BstV2I GAAGAC 2 cut(s) 379, 933
BstX2I RGATCY 2 cut(s) 132, 226
BstYI RGATCY 2 cut(s) 132, 226
BsuRI GGCC 3 cut(s) 386, 470, 746
BtsCI GGATG 3 cut(s) 17, 278, 532
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 593
Cac8I GCNNGC 2 cut(s) 6, 263
CciI TCATGA 1 cut(s) 249
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 179, 564, 846
CviAII CATG 8 cut(s) 23, 64, 113, 176, 250, 346, 458, 961
CviQI GTAC 3 cut(s) 179, 564, 846
DdeI CTNAG 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 384, 744
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 560, 822
Eco53kI GAGCTC 1 cut(s) 820
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 560, 822
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 8 cut(s) 26, 67, 116, 179, 253, 349, 461, 964
FatI CATG 8 cut(s) 22, 63, 112, 175, 249, 345, 457, 960
FauI CCCGC 1 cut(s) 928
FbaI TGATCA 2 cut(s) 307, 873
Fnu4HI GCNGC 5 cut(s) 471, 512, 736, 919, 933
FokI GGATG 3 cut(s) 24, 265, 539
FriOI GRGCYC 2 cut(s) 560, 822
Fsp4HI GCNGC 5 cut(s) 471, 512, 736, 919, 933
FspBI CTAG 1 cut(s) 561
GluI GCNGC 5 cut(s) 471, 512, 736, 919, 933
HaeIII GGCC 3 cut(s) 386, 470, 746
HgaI GACGC 1 cut(s) 938
Hin1II CATG 8 cut(s) 26, 67, 116, 179, 253, 349, 461, 964
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 3 cut(s) 172, 202, 608
HphI GGTGA 5 cut(s) 131, 305, 799, 883, 958
Hpy166II GTNNAC 4 cut(s) 181, 463, 894, 953
Hpy188I TCNGA 2 cut(s) 167, 454
Hpy188III TCNNGA 4 cut(s) 250, 337, 690, 815
Hpy8I GTNNAC 4 cut(s) 181, 463, 894, 953
HpyAV CCTTC 4 cut(s) 219, 325, 710, 937
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 6 cut(s) 4, 15, 349, 463, 514, 738
HpyF3I CTNAG 1 cut(s) 722
Hsp92II CATG 8 cut(s) 26, 67, 116, 179, 253, 349, 461, 964
Ksp22I TGATCA 2 cut(s) 307, 873
LmnI GCTCC 3 cut(s) 53, 508, 825
LpnPI CCDG 6 cut(s) 160, 275, 452, 479, 642, 692
Lsp1109I GCAGC 4 cut(s) 498, 722, 905, 944
LweI GCATC 2 cut(s) 2, 287
MaeI CTAG 1 cut(s) 561
MboII GAAGA 6 cut(s) 48, 51, 236, 352, 384, 938
MflI RGATCY 2 cut(s) 132, 226
MhlI GDGCHC 4 cut(s) 465, 560, 822, 857
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 5 cut(s) 235, 475, 530, 580, 841
MluNI TGGCCA 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 117, 237
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 935
MspR9I CCNGG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 467
NlaIII CATG 8 cut(s) 26, 67, 116, 179, 253, 349, 461, 964
NmeAIII GCCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 249
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 3 cut(s) 172, 202, 608
PkrI GCNGC 5 cut(s) 472, 513, 737, 920, 934
Ple19I CGATCG 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PsuI RGATCY 2 cut(s) 132, 226
PvuI CGATCG 1 cut(s) 900
RsaI GTAC 3 cut(s) 180, 565, 847
RsaNI GTAC 3 cut(s) 179, 564, 846
RseI CAYNNNNRTG 2 cut(s) 117, 237
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 5 cut(s) 471, 512, 736, 919, 933
ScaI AGTACT 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 4 cut(s) 465, 560, 822, 857
SfaNI GCATC 2 cut(s) 2, 287
SmiMI CAYNNNNRTG 2 cut(s) 117, 237
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 5 cut(s) 235, 475, 530, 580, 841
SsiI CCGC 5 cut(s) 130, 471, 569, 713, 935
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 28, 504, 851
TasI AATT 5 cut(s) 235, 475, 530, 580, 841
TatI WGTACW 3 cut(s) 178, 563, 845
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 3 cut(s) 172, 202, 608
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 593
TseI GCWGC 4 cut(s) 511, 735, 918, 932
TspDTI ATGAA 3 cut(s) 543, 582, 956
TspRI CASTG 1 cut(s) 593
VneI GTGCAC 1 cut(s) 461
XapI RAATTY 1 cut(s) 580
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.