Rh7CG192500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016840
Physical Location & Seq
Reverse (-)
16993297 .. 16994314
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG192500.1

Sequence Viewer

Length: 807 bp
ATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATCATGTACACCCACTCCCGCTCCCACTGAATCCTCCTCCTAATCAAAAGGAAGATCCTCATAATTATGATCGTTTCATGAGCTTTAGCCAGCCTAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGATGATCAAAACCCAAAGGAGAGCAAGAAGGTAAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCAATCTACGATCTCATCTCCCTCTGGAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCTGCAAGAAAAGAGGGATGAATTGAAAAAACAATACAATATTTCAGGCTCTAGTACTGCAGTAGAGGAAAATTCGCAGTGTTCATCACTAATGGGGGATTCTGTCATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAAAGGTTGCTTTATACCCTTGAATCTGAGGTGAGTGATGGGGGAAGCATTGATATTCCTGAGCTCCAAAACAGATTGATAAAAAAATGTACTTCTGAGCCTGGCTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

268

Amino Acids

30.57

Weight (kDa)

7.7

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 92 - 144 4.2e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 130
AciI CCGC 3 cut(s) 67, 128, 408
AclWI GGATC 3 cut(s) 77, 158, 399
AcoI YGGCCR 2 cut(s) 321, 681
AcsI RAATTY 1 cut(s) 517
AfaI GTAC 3 cut(s) 117, 502, 784
AgsI TTSAA 6 cut(s) 29, 472, 607, 627, 716, 802
AjnI CCWGG 2 cut(s) 402, 793
AluBI AGCT 8 cut(s) 41, 61, 192, 448, 569, 590, 672, 757
AluI AGCT 8 cut(s) 41, 61, 192, 448, 569, 590, 672, 757
Alw21I GWGCWC 2 cut(s) 402, 759
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 3 cut(s) 77, 158, 399
AoxI GGCC 3 cut(s) 321, 405, 681
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 448, 672
ApoI RAATTY 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 68, 242, 736
BaeGI GKGCMC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 759
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 402, 759
BbvI GCAGC 2 cut(s) 435, 659
BccI CCATC 2 cut(s) 227, 725
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 404, 795
BclI TGATCA 1 cut(s) 244
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 3 cut(s) 408, 449, 673
BlsI GCNGC 3 cut(s) 409, 450, 674
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 404, 795
BmrFI CCNGG 2 cut(s) 404, 795
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 316
Bpu10I CCTNAGC 2 cut(s) 204, 753
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 243
BsaXI ACNNNNNCTCC 6 cut(s) 108, 114, 138, 144, 570, 600
Bse1I ACTGG 1 cut(s) 648
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 404, 795
BseGI GGATG 2 cut(s) 215, 469
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 3 cut(s) 711, 744, 780
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 135, 458
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 435, 659
BshFI GGCC 3 cut(s) 323, 407, 683
BsiHKAI GWGCWC 2 cut(s) 402, 759
BsnI GGCC 3 cut(s) 323, 407, 683
Bsp1286I GDGCHC 2 cut(s) 402, 759
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
BspACI CCGC 3 cut(s) 67, 128, 408
BspANI GGCC 3 cut(s) 323, 407, 683
BspCNI CTCAG 3 cut(s) 712, 745, 781
BspHI TCATGA 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 3 cut(s) 77, 158, 399
BsrBI CCGCTC 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 648
BssMI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 404, 795
Bst4CI ACNGT 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 5 cut(s) 204, 659, 720, 753, 789
BstF5I GGATG 2 cut(s) 215, 469
BstKTI GATC 7 cut(s) 72, 166, 181, 247, 282, 347, 394
BstMBI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
BstNI CCWGG 2 cut(s) 404, 795
BstSCI CCNGG 2 cut(s) 402, 793
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 435, 659
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 69, 163
BstYI RGATCY 2 cut(s) 69, 163
BsuRI GGCC 3 cut(s) 323, 407, 683
BtsCI GGATG 2 cut(s) 215, 469
BtsI GCAGTG 1 cut(s) 530
BtsIMutI CAGTG 2 cut(s) 134, 530
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 186
Csp6I GTAC 3 cut(s) 116, 501, 783
CviAII CATG 5 cut(s) 50, 113, 187, 283, 395
CviQI GTAC 3 cut(s) 116, 501, 783
DdeI CTNAG 5 cut(s) 204, 659, 720, 753, 789
DpnI GATC 7 cut(s) 71, 165, 180, 246, 281, 346, 393
DpnII GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
EaeI YGGCCR 2 cut(s) 321, 681
Ecl136II GAGCTC 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 757
EcoICRI GAGCTC 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 402, 793
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 5 cut(s) 53, 116, 190, 286, 398
FatI CATG 5 cut(s) 49, 112, 186, 282, 394
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 408, 449, 673
FokI GGATG 2 cut(s) 202, 476
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 3 cut(s) 408, 449, 673
FspBI CTAG 1 cut(s) 498
GluI GCNGC 3 cut(s) 408, 449, 673
HaeIII GGCC 3 cut(s) 323, 407, 683
Hin1II CATG 5 cut(s) 53, 116, 190, 286, 398
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 109, 139, 545, 716
HphI GGTGA 3 cut(s) 68, 242, 736
Hpy166II GTNNAC 2 cut(s) 118, 400
Hpy188I TCNGA 5 cut(s) 104, 391, 563, 721, 790
Hpy188III TCNNGA 4 cut(s) 187, 359, 627, 752
Hpy8I GTNNAC 2 cut(s) 118, 400
HpyAV CCTTC 2 cut(s) 262, 647
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 6 cut(s) 286, 400, 451, 506, 650, 675
HpyF3I CTNAG 5 cut(s) 204, 659, 720, 753, 789
Hsp92II CATG 5 cut(s) 53, 116, 190, 286, 398
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
LmnI GCTCC 3 cut(s) 135, 445, 762
Lsp1109I GCAGC 2 cut(s) 435, 659
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 498
MalI GATC 7 cut(s) 71, 165, 180, 246, 281, 346, 393
MbiI CCGCTC 1 cut(s) 130
MboI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
MboII GAAGA 3 cut(s) 173, 289, 321
MflI RGATCY 2 cut(s) 69, 163
MhlI GDGCHC 2 cut(s) 402, 759
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 29, 172, 412, 467, 517
MluNI TGGCCA 1 cut(s) 323
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 54, 174
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 404, 795
MvaI CCWGG 2 cut(s) 404, 795
NdeII GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
NlaIII CATG 5 cut(s) 53, 116, 190, 286, 398
NmeAIII GCCGAG 1 cut(s) 659
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 4 cut(s) 109, 139, 545, 716
PkrI GCNGC 3 cut(s) 409, 450, 674
Psp124BI GAGCTC 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 402, 793
PspGI CCWGG 2 cut(s) 402, 793
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 2 cut(s) 69, 163
RsaI GTAC 3 cut(s) 117, 502, 784
RsaNI GTAC 3 cut(s) 116, 501, 783
RseI CAYNNNNRTG 2 cut(s) 54, 174
SacI GAGCTC 1 cut(s) 759
SatI GCNGC 3 cut(s) 408, 449, 673
Sau3AI GATC 7 cut(s) 69, 163, 178, 244, 279, 344, 391
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 404, 795
SduI GDGCHC 2 cut(s) 402, 759
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 54, 174
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 5 cut(s) 29, 172, 412, 467, 517
SsiI CCGC 3 cut(s) 67, 128, 408
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 2 cut(s) 402, 793
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 441
TasI AATT 5 cut(s) 29, 172, 412, 467, 517
TatI WGTACW 3 cut(s) 115, 500, 782
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 4 cut(s) 109, 139, 545, 716
TscAI CASTG 2 cut(s) 141, 530
TseI GCWGC 2 cut(s) 448, 672
TspDTI ATGAA 3 cut(s) 175, 480, 519
TspRI CASTG 2 cut(s) 141, 530
VneI GTGCAC 1 cut(s) 398
XapI RAATTY 1 cut(s) 517
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.