Rorug07G0057500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016840
Physical Location & Seq
Forward (+)
4140150 .. 4141553
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0057500.1

Sequence Viewer

Length: 918 bp
ATGTGCACTCCATGGACTATAACAAAGCTAGTGAAGAAGGACTGTGCTTCATGCTTCTTGGCTTGCAGGTTTCCTCTAGATGATGAAGCAGTTGATGATCGTAGACGTTATGCTACAACAACTCCTCAGTTGCCAATGAGAAACATGATGGCTTTCGATTATCAGCGCGACTTTGGAGAGAATGAGAGAGTTAGGAACAAGAACATGTCCCCCTCACGCCACAAGAATTCGAACCTATCAGCTCGAAGACGACTGAGACATGATCCCAAACAGGTTAAAGAGATTGCTAGTACTAGTAGAATTAGTAGTACTACTTCCAGGCCAGTTCGATATCAGAGTAGTGATGAAGAATCAAGCTGCAGACATCTGCCACATTTCGCAGACGAAGATCAAGACTACATAGTATTCTGCTTCAAAGAAGATGGAGCATTCGAAGTTGAGAAAAATGTCAAACCAGAAGGACAGAATTGCAGGGACAGCACCTCATCAAAAAACTCGAGGCAGATCAATCGGAAGCTTAATTATGACCAAAATACGAAAACAGTTGGAAAGTGTAGCAATGAGGAGAGGTTGACTGAAAAAGCATGTGAAATCAATATTTACCCCACAAATGATGGCAATTTTATCATCTTTGACCAAAAGAATGAAGGTAGAGACGGAAAGAACACATGCTCGGATACAAAAGCAACTACTGCTGCTGGTAGCATGGGTGAGGTCTCTATTGAATCAAGTGACTCTAATCAATCGGACCACAGCACAGGCTCTTTCGCATTCCCTGTGTATGATTGGATCGGTGAATACAGGTTGGCTGTGGAATGGCCGGGGAGTCCTGTGCAATTGCCAAAACCAGAAGAGCTGGACTTGAGAGAGCACAAGGCTCGGTGTATAGGCCTTCAGTTTCAGTGTTGTAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

305

Amino Acids

34.98

Weight (kDa)

6.98

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 168
AclWI GGATC 2 cut(s) 257, 797
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 878
AfaI GTAC 2 cut(s) 292, 310
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 415, 725
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 5 cut(s) 28, 242, 357, 517, 856
AluI AGCT 5 cut(s) 28, 242, 357, 517, 856
Alw21I GWGCWC 2 cut(s) 8, 873
Alw26I GTCTC 3 cut(s) 250, 648, 721
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 2 cut(s) 257, 797
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 3 cut(s) 320, 818, 889
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 357, 695
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 748
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 2 cut(s) 722, 806
AsuII TTCGAA 2 cut(s) 230, 432
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 8, 873
BbvI GCAGC 2 cut(s) 344, 682
BccI CCATC 3 cut(s) 142, 416, 608
BcgI CGANNNNNNTGC 4 cut(s) 491, 525, 860, 894
BciT130I CCWGG 1 cut(s) 319
BciVI GTATCC 1 cut(s) 670
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 250, 648, 721
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 4 cut(s) 29, 77, 288, 294
BfmI CTRYAG 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 57
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 2 cut(s) 358, 696
BlsI GCNGC 2 cut(s) 359, 697
BmcAI AGTACT 2 cut(s) 292, 310
Bme1390I CCNGG 2 cut(s) 319, 822
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 748
BmrFI CCNGG 2 cut(s) 319, 822
BpiI GAAGAC 1 cut(s) 253
Bpu14I TTCGAA 2 cut(s) 230, 432
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 11, 821
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 11, 821
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 2 cut(s) 140, 245
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 114, 578
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 344, 682
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 3 cut(s) 322, 820, 891
BsiHKAI GWGCWC 2 cut(s) 8, 873
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 2 cut(s) 193, 488
BsmAI GTCTC 3 cut(s) 250, 648, 721
BsmBI CGTCTC 1 cut(s) 648
BsmFI GGGAC 2 cut(s) 193, 488
BsmI GAATGC 2 cut(s) 428, 770
BsnI GGCC 3 cut(s) 322, 820, 891
Bso31I GGTCTC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 496
Bsp119I TTCGAA 2 cut(s) 230, 432
Bsp1286I GDGCHC 2 cut(s) 8, 873
Bsp143I GATC 5 cut(s) 97, 262, 388, 504, 789
Bsp19I CCATGG 1 cut(s) 11
BspANI GGCC 3 cut(s) 322, 820, 891
BspCNI CTCAG 2 cut(s) 139, 246
BspFNI CGCG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 257, 797
BspQI GCTCTTC 1 cut(s) 846
BspT104I TTCGAA 2 cut(s) 230, 432
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 11, 821
BssMI GATC 5 cut(s) 97, 262, 388, 504, 789
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 44, 544
Bst6I CTCTTC 1 cut(s) 846
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBI TTCGAA 2 cut(s) 230, 432
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 126, 254
BstDSI CCRYGG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 5 cut(s) 100, 265, 391, 507, 792
BstMAI GTCTC 3 cut(s) 250, 648, 721
BstMBI GATC 5 cut(s) 97, 262, 388, 504, 789
BstMWI GCNNNNNNNGC 2 cut(s) 477, 692
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 3 cut(s) 208, 588, 672
BstSCI CCNGG 2 cut(s) 317, 820
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 344, 682
BstV2I GAAGAC 1 cut(s) 253
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 3 cut(s) 322, 820, 891
BtgI CCRYGG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 908
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 748
Csp6I GTAC 2 cut(s) 291, 309
CviAII CATG 8 cut(s) 12, 51, 145, 205, 260, 585, 669, 706
CviQI GTAC 2 cut(s) 291, 309
DdeI CTNAG 2 cut(s) 126, 254
DpnI GATC 5 cut(s) 99, 264, 390, 506, 791
DpnII GATC 5 cut(s) 97, 262, 388, 504, 789
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 891
Eco31I GGTCTC 1 cut(s) 721
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 317
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 648
FaeI CATG 8 cut(s) 15, 54, 148, 208, 263, 588, 672, 709
FaqI GGGAC 2 cut(s) 193, 488
FatI CATG 8 cut(s) 11, 50, 144, 204, 259, 584, 668, 705
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 358, 696
Fsp4HI GCNGC 2 cut(s) 358, 696
FspBI CTAG 4 cut(s) 29, 77, 288, 294
GlaI GCGC 1 cut(s) 167
GluI GCNGC 2 cut(s) 358, 696
HaeIII GGCC 3 cut(s) 322, 820, 891
HapII CCGG 1 cut(s) 821
HhaI GCGC 1 cut(s) 168
Hin1II CATG 8 cut(s) 15, 54, 148, 208, 263, 588, 672, 709
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 350, 725, 734, 826, 912
HpaII CCGG 1 cut(s) 821
HphI GGTGA 2 cut(s) 722, 806
Hpy166II GTNNAC 3 cut(s) 6, 104, 573
Hpy188I TCNGA 5 cut(s) 336, 513, 676, 748, 917
Hpy188III TCNNGA 2 cut(s) 77, 392
Hpy8I GTNNAC 3 cut(s) 6, 104, 573
HpyAV CCTTC 4 cut(s) 31, 452, 641, 902
HpyCH4III ACNGT 2 cut(s) 44, 544
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 6, 66, 360, 471, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 692
HpyF3I CTNAG 2 cut(s) 126, 254
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 8 cut(s) 15, 54, 148, 208, 263, 588, 672, 709
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 5 cut(s) 97, 262, 388, 504, 789
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 2 cut(s) 344, 682
MaeI CTAG 4 cut(s) 29, 77, 288, 294
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 731
MalI GATC 5 cut(s) 99, 264, 390, 506, 791
MboI GATC 5 cut(s) 97, 262, 388, 504, 789
MboII GAAGA 6 cut(s) 46, 258, 359, 398, 431, 863
MfeI CAATTG 1 cut(s) 836
MhlI GDGCHC 2 cut(s) 8, 873
MluCI AATT 6 cut(s) 226, 300, 466, 520, 619, 836
MlyI GAGTC 2 cut(s) 728, 835
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 8 cut(s) 84, 135, 223, 492, 493, 556, 561, 706
MseI TTAA 2 cut(s) 276, 519
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 2 cut(s) 319, 822
MunI CAATTG 1 cut(s) 836
Mva1269I GAATGC 2 cut(s) 428, 770
MvaI CCWGG 1 cut(s) 319
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 477, 692
NciI CCSGG 1 cut(s) 822
NcoI CCATGG 1 cut(s) 11
NdeII GATC 5 cut(s) 97, 262, 388, 504, 789
NlaIII CATG 8 cut(s) 15, 54, 148, 208, 263, 588, 672, 709
NmuCI GTSAC 1 cut(s) 731
NspI RCATGY 3 cut(s) 208, 588, 672
NspV TTCGAA 2 cut(s) 230, 432
PaeR7I CTCGAG 1 cut(s) 496
PceI AGGCCT 1 cut(s) 891
PciI ACATGT 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 846
PctI GAATGC 2 cut(s) 428, 770
PfeI GAWTC 3 cut(s) 350, 725, 912
PkrI GCNGC 2 cut(s) 359, 697
PleI GAGTC 2 cut(s) 728, 834
PpsI GAGTC 2 cut(s) 728, 834
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspPI GGNCC 1 cut(s) 748
PspXI VCTCGAGB 1 cut(s) 496
PstI CTGCAG 1 cut(s) 362
RsaI GTAC 2 cut(s) 292, 310
RsaNI GTAC 2 cut(s) 291, 309
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 2 cut(s) 276, 519
SatI GCNGC 2 cut(s) 358, 696
Sau3AI GATC 5 cut(s) 97, 262, 388, 504, 789
Sau96I GGNCC 1 cut(s) 748
ScaI AGTACT 2 cut(s) 292, 310
SchI GAGTC 2 cut(s) 728, 835
ScrFI CCNGG 2 cut(s) 319, 822
SduI GDGCHC 2 cut(s) 8, 873
SfcI CTRYAG 1 cut(s) 358
Sfr274I CTCGAG 1 cut(s) 496
SfuI TTCGAA 2 cut(s) 230, 432
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 496
SmlI CTYRAG 2 cut(s) 496, 862
SmoI CTYRAG 2 cut(s) 496, 862
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 6 cut(s) 226, 300, 466, 520, 619, 836
SseBI AGGCCT 1 cut(s) 891
SspI AATATT 1 cut(s) 598
SspMI CTAG 4 cut(s) 29, 77, 288, 294
StuI AGGCCT 1 cut(s) 891
StyD4I CCNGG 2 cut(s) 317, 820
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 44, 544
TaiI ACGT 1 cut(s) 109
TaqI TCGA 6 cut(s) 156, 230, 244, 328, 432, 497
TasI AATT 6 cut(s) 226, 300, 466, 520, 619, 836
TatI WGTACW 2 cut(s) 290, 308
TfiI GAWTC 3 cut(s) 350, 725, 912
Tru1I TTAA 2 cut(s) 276, 519
Tru9I TTAA 2 cut(s) 276, 519
TscAI CASTG 1 cut(s) 908
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 2 cut(s) 357, 695
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 39, 99, 360, 660
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 1 cut(s) 908
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 1 cut(s) 226
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 3 cut(s) 208, 588, 672
XhoI CTCGAG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 4 cut(s) 29, 77, 288, 294
ZrmI AGTACT 2 cut(s) 292, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.