Rorug07G0057400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000084
Physical Location & Seq
Reverse (-)
4130696 .. 4139112
8417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0057400.1

Sequence Viewer

Length: 2868 bp
ATGCAGGAGAGGACAACCTCAACTCTATTGGAGCAAGCACTGGAACAGCTTGCGACATTTGGAGTTAAACTTGATATGCAGGACATGGAGCATCTTTCGGTTATTTCTCCCAAGGTAGTTCTTTTTGTGAAGAAGAATGCAGAGGAGACAAGTTCTGGTAATGCACTTGTTATTATTGAATGCTCGGCAGAACAGAACCATGGAGACAGAAATAATCATGAATCTGCTTGCAAACAGATGGATGTATCAAAGATTGTCAATGAATTGAAGATGCAGGAAAGTTCTTTCAAAAGTAATTTGTGGGAGGCTGTTGAGAGGTTAATGTTTATCAAAAGAAATGAGATTTCCTCCTTGGAAGACTTTCTCATTTCTGTGAAGGATTGTGGTGCTGCTGCTGCAAGAGGAAATAAAGTGAATCAAGCAACGAAAAGCCACACAGCTTCAACTACTGATTCAGACAAAAAACACTCTGCAGCTTCAACCTCTCGTTCAGACAAAAAGCGAGCACGATGTCATAGAACAGATCCATTGCTACCAGTTGAGATGGTTGAACATCTTAGAAAGAGAATTGGATCAGCAACGAAGATAGTGCATGTCGAAGACATTGGTGCTCGAAATGCTGTTCATGTGGAAGTTCCACAGGAACTATCAGAAAATCCGAGATCTGTACTTCATTCTATTGGAATCACTCAGTTATATAGCCATCAGGCAGAGTCGATACAAGCCTCACTAACTGGCAAGAATGTTGTTGTGGCTACAATGACATCCAGTGGGAAATCTCTTTGCTACAATCTACCGGTCATTGAAGCCCTGTCCCAGAGTTCCTCATCATGTGCTCTATACTTATTTCCAACGAAGGCTTTAGCTCAAGATCAACTAAGAGCTTTCTCAGCTATGACCAAAGGATTCAGTGGTAGCTTAAATGTTGGTATATATGATGGTGACACTAATCAGCAGGAAAGGACACGACTGCGTCAAAGTGCTAGACTGCTAATCACAAATCCAGATATGTTGCATGTATCAATCCTGCCACACCACCGAAAATTTGGCCGGATTTTGGCAAATCTTAGGTATGTAGTGATTGATGAGGCCCATGTTTATAAGGGAGCATTTGGTTGTCACACTGCTCTTATACTTAGGCGACTTCGCCGGCTCTGTTCACATGTGTATGGAAGTGATCCTTCTTTTGTGTTTTCTACTGCGACTTCGGCAAATCCTCGTGAGCATTGCATGGAACTTGCGAATTTACCAACTCTAGAGTTGATTCAGAATGATGGAAGCCCTGCTGCTAGAAAGCTTTTCATCCTTTGGAATTCTGAGGACAGCGCAATTGAGGATATATCATTCCTCTTTGCTGAAATGGTCCAGCATGGACTACGGTGCATTGCATTTTGCAAAACACGCAAGCTTTGTGAACTTGTTTTTTGCTATACGCGTGAAATTCTTCAGGAGACAGCACCCCATCTGGCAGAGTCTATATGTTCTTATCGTGCTGGTTACATTGCTGAGGATAGGAGAAGAATAGAGAGTGATTTATTTAATGGGAAACTTTCTGGTATTGCTGCAACAAATGCCCTTGAATTGGGTATTGATGTTGGACACATTGATGTAACTCTTCATTTAGGTTTTCCCGGAAGTATTGCTAGCTTGTGGCAACAAGCTGGCAGAGCCGGAAGGAGAGAGAGACCTTCTCTTGCTGTATATGTTGCATCCGAAGGGCCCCTTGACCAATATTTTATGAAACATCCAAATAAACTTTTTGGAAGCCCAATTGAGTGCTGTCATGTTGATGCTAAGAACCAACAGGTTCTTGAACAGCATTTGCCTTGTGCTGCTCTTGAACACCCACTGAGCTTGTTTTATGATGAGAAGTTTTTCGGTTCTGGTTTAAACAGTGCCATAATGTCTCTTAAAAGTAGAGGACATCTGAGTTATGATCCATCATGTGATTCTTCTGCTAAAATCTGGAACTATATTGGGTATGAGAAAATGCCTTCACATTCAGTTAGTATTCGATCAATTGAAAGAGAGAGATACAAAGTTATGGACCATCAAGAGAAAGAAATCGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTATATGAAGGTGCTGTTTATTTGAACCAAGGAAAGACATACCTGGTCACAAGCTTAGATTTATCTAGAAAGATTGCTTGCTGCCAAAAAGCTGATGTAAATTATTATACGAAACCCCGTGATCGCACAGATATTCATGTAGTTGGTGGTAATGTGGCTTATCCAGCTCCAGCTAAGCTTTCGAACCAGTTCTCCAGAACAACTGCCCGAGCAGATCCTTGCAGAGTAACAACTACATGGTTTGGATTCTATCGTGTACATAAAGGAAGCAACGTGATATTTGATAGAGTTAACCTTGCACTTCCTAAATATACGTATGCGTCACAGGCAGTTTGGGTTCCGGTTCCACGATCAATAATTAAAGCAGTGGAGAGTAAACAACTTGAATACCGTGCAGGGCTGCATGCTGCATCACATGCTGTTCTGCACGTTGTGCCTCTACGAATCATTTGCAACTTATCTGACTTGGCTCCAGAGTGTGCGGACCCTCATGACAGCAGATATTTTCCGGAGAGGATTCTATTATACGATCAGCATCCTGGAGGGACTGGTGTCTGTGTACAGGTTCATCCATTTTTTATGGAGCTCTTGGGTACTGCTCTGGAACTCCTAACATCTTGCCACTGCAGAGAATATAACGGTTGCCCTAATTGCATTCAGAGTTTTTGTTGCAAGTCATATAATGAGGTCTTACACAAGGATGCAGCAATTATGATCATTAAGGGTGTTCTGGACGCGAATAAATCTTCTGACTCTTCCGGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

955

Amino Acids

106.47

Weight (kDa)

7.72

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 231 - 368 3e-07 Type III restriction enzyme, res subunit
DEAD PF00270 234 - 404 3.7e-31 DEAD/DEAH box helicase
Helicase_C PF00271 454 - 560 1.3e-12 Helicase conserved C-terminal domain
WHD_HRQ1 PF22982 596 - 674 5.1e-17 ATP-dependent helicase HRQ1, winged helix domain
MZB PF09369 837 - 919 2.2e-17 MrfA Zn-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1101
AccII CGCG 2 cut(s) 1435, 2837
AccIII TCCGGA 2 cut(s) 2608, 2858
AciI CCGC 1 cut(s) 2582
AclWI GGATC 5 cut(s) 518, 580, 1172, 1931, 2309
AcoI YGGCCR 1 cut(s) 1048
AcsI RAATTY 4 cut(s) 1043, 1243, 1312, 1440
AcuI CTGAAG 1 cut(s) 1430
AdeI CACNNNGTG 1 cut(s) 2533
AfaI GTAC 4 cut(s) 669, 2358, 2661, 2695
AfiI CCNNNNNNNGG 2 cut(s) 1057, 1582
AflIII ACRYGT 2 cut(s) 1162, 1433
AgeI ACCGGT 1 cut(s) 796
AjnI CCWGG 2 cut(s) 2142, 2638
AloI GAACNNNNNNTCC 2 cut(s) 2276, 2308
Alw21I GWGCWC 4 cut(s) 508, 613, 838, 2688
Alw26I GTCTC 5 cut(s) 140, 198, 1445, 1678, 1911
AlwI GGATC 5 cut(s) 518, 580, 1172, 1931, 2309
Ama87I CYCGRG 1 cut(s) 2307
Aor13HI TCCGGA 2 cut(s) 2608, 2858
AoxI GGCC 3 cut(s) 1048, 1089, 1718
ApaI GGGCCC 1 cut(s) 1722
ApoI RAATTY 4 cut(s) 1043, 1243, 1312, 1440
AsiGI ACCGGT 1 cut(s) 796
Asp700I GAANNNNTTC 4 cut(s) 360, 1443, 1874, 2288
AspLEI GCGC 1 cut(s) 1328
AspS9I GGNCC 6 cut(s) 1090, 1363, 1718, 1719, 2047, 2584
AsuC2I CCSGG 1 cut(s) 1632
AsuHPI GGTGA 1 cut(s) 953
AsuII TTCGAA 1 cut(s) 2282
AsuNHI GCTAGC 1 cut(s) 1643
AvaI CYCGRG 1 cut(s) 2307
AvaII GGWCC 3 cut(s) 1363, 2047, 2584
BaeGI GKGCMC 1 cut(s) 1722
BanII GRGCYC 2 cut(s) 1722, 2688
BauI CACGAG 1 cut(s) 1218
BbsI GAAGAC 2 cut(s) 363, 606
Bbv12I GWGCWC 4 cut(s) 508, 613, 838, 2688
BbvCI CCTCAGC 1 cut(s) 1506
BccI CCATC 8 cut(s) 232, 538, 711, 932, 1268, 1470, 1948, 2058
BcgI CGANNNNNNTGC 4 cut(s) 571, 605, 2532, 2566
BciT130I CCWGG 2 cut(s) 2144, 2640
BclI TGATCA 1 cut(s) 2814
BcnI CCSGG 1 cut(s) 1632
BcoDI GTCTC 5 cut(s) 140, 198, 1445, 1678, 1911
BfaI CTAG 5 cut(s) 984, 1256, 1290, 1644, 2166
BfmI CTRYAG 2 cut(s) 471, 2725
BglII AGATCT 1 cut(s) 662
BlpI GCTNAGC 1 cut(s) 2274
Bme1390I CCNGG 3 cut(s) 1632, 2144, 2640
Bme18I GGWCC 3 cut(s) 1363, 2047, 2584
BmeT110I CYCGRG 1 cut(s) 2307
BmgT120I GGNCC 6 cut(s) 1090, 1363, 1718, 1719, 2047, 2584
BmiI GGNNCC 6 cut(s) 1720, 1721, 2439, 2445, 2571, 2586
BmrFI CCNGG 3 cut(s) 1632, 2144, 2640
BmsI GCATC 7 cut(s) 100, 261, 1718, 1780, 2519, 2644, 2791
BmtI GCTAGC 1 cut(s) 1647
BoxI GACNNNNGTC 1 cut(s) 2651
BpiI GAAGAC 2 cut(s) 363, 606
BplI GAGNNNNNCTC 4 cut(s) 332, 364, 1675, 1707
BpmI CTGGAG 4 cut(s) 2253, 2278, 2556, 2661
Bpu10I CCTNAGC 1 cut(s) 1506
Bpu1102I GCTNAGC 1 cut(s) 2274
Bpu14I TTCGAA 1 cut(s) 2282
BpuEI CTTGAG 1 cut(s) 852
BpuMI CCSGG 1 cut(s) 1632
BsaAI YACGTR 1 cut(s) 2415
BsaBI GATNNNNATC 1 cut(s) 2634
BsaI GGTCTC 1 cut(s) 1678
BsaJI CCNNGG 4 cut(s) 111, 199, 351, 2128
BsaWI WCCGGW 4 cut(s) 796, 2440, 2608, 2858
BsaXI ACNNNNNCTCC 2 cut(s) 2276, 2306
Bsc4I CCNNNNNNNGG 2 cut(s) 1057, 1582
Bse118I RCCGGY 2 cut(s) 796, 1149
Bse1I ACTGG 6 cut(s) 45, 536, 739, 768, 2287, 2653
Bse3DI GCAATG 4 cut(s) 527, 1225, 1383, 1500
Bse8I GATNNNNATC 1 cut(s) 2634
BseAI TCCGGA 2 cut(s) 2608, 2858
BseBI CCWGG 2 cut(s) 2144, 2640
BseDI CCNNGG 4 cut(s) 111, 199, 351, 2128
BseGI GGATG 8 cut(s) 247, 764, 1302, 1709, 1744, 2635, 2668, 2806
BseJI GATNNNNATC 1 cut(s) 2634
BseLI CCNNNNNNNGG 2 cut(s) 1057, 1582
BseMI GCAATG 4 cut(s) 527, 1225, 1383, 1500
BseMII CTCAG 6 cut(s) 704, 903, 1308, 1497, 1841, 1919
BseNI ACTGG 6 cut(s) 45, 536, 739, 768, 2287, 2653
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 1722
BsgI GTGCAG 2 cut(s) 2510, 2514
Bsh1236I CGCG 2 cut(s) 1435, 2837
BshFI GGCC 3 cut(s) 1050, 1091, 1720
BshTI ACCGGT 1 cut(s) 796
BsiHKAI GWGCWC 4 cut(s) 508, 613, 838, 2688
BsiHKCI CYCGRG 1 cut(s) 2307
BsiSI CCGG 8 cut(s) 797, 1051, 1150, 1632, 1671, 2441, 2609, 2859
BslFI GGGAC 2 cut(s) 799, 2659
BslI CCNNNNNNNGG 2 cut(s) 1057, 1582
BsmAI GTCTC 5 cut(s) 140, 198, 1445, 1678, 1911
BsmFI GGGAC 2 cut(s) 799, 2659
BsmI GAATGC 3 cut(s) 142, 185, 2754
BsnI GGCC 3 cut(s) 1050, 1091, 1720
Bso31I GGTCTC 1 cut(s) 1678
BsoBI CYCGRG 1 cut(s) 2307
Bsp119I TTCGAA 1 cut(s) 2282
Bsp120I GGGCCC 1 cut(s) 1718
Bsp1286I GDGCHC 5 cut(s) 508, 613, 838, 1722, 2688
Bsp13I TCCGGA 2 cut(s) 2608, 2858
Bsp1407I TGTACA 2 cut(s) 2356, 2659
Bsp1720I GCTNAGC 1 cut(s) 2274
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 1 cut(s) 2582
BspANI GGCC 3 cut(s) 1050, 1091, 1720
BspCNI CTCAG 6 cut(s) 703, 902, 1309, 1498, 1842, 1920
BspEI TCCGGA 2 cut(s) 2608, 2858
BspFNI CGCG 2 cut(s) 1435, 2837
BspHI TCATGA 2 cut(s) 217, 2590
BspLI GGNNCC 6 cut(s) 1720, 1721, 2439, 2445, 2571, 2586
BspMAI CTGCAG 2 cut(s) 475, 2729
BspOI GCTAGC 1 cut(s) 1647
BspPI GGATC 5 cut(s) 518, 580, 1172, 1931, 2309
BspT104I TTCGAA 1 cut(s) 2282
BspTNI GGTCTC 1 cut(s) 1678
BsrDI GCAATG 4 cut(s) 527, 1225, 1383, 1500
BsrFI RCCGGY 2 cut(s) 796, 1149
BsrGI TGTACA 2 cut(s) 2356, 2659
BsrI ACTGG 6 cut(s) 45, 536, 739, 768, 2287, 2653
BssAI RCCGGY 2 cut(s) 796, 1149
BssECI CCNNGG 4 cut(s) 111, 199, 351, 2128
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 4 cut(s) 111, 199, 351, 2128
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 2 cut(s) 2144, 2640
Bst6I CTCTTC 3 cut(s) 1620, 2064, 2860
BstAPI GCANNNNNTGC 3 cut(s) 1571, 2516, 2533
BstAUI TGTACA 2 cut(s) 2356, 2659
BstBAI YACGTR 1 cut(s) 2415
BstBI TTCGAA 1 cut(s) 2282
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 8 cut(s) 247, 764, 1302, 1709, 1744, 2635, 2668, 2806
BstFNI CGCG 2 cut(s) 1435, 2837
BstHHI GCGC 1 cut(s) 1328
BstMAI GTCTC 5 cut(s) 140, 198, 1445, 1678, 1911
BstNI CCWGG 2 cut(s) 2144, 2640
BstNSI RCATGY 5 cut(s) 596, 1019, 1166, 2507, 2519
BstPAI GACNNNNGTC 1 cut(s) 2651
BstSCI CCNGG 3 cut(s) 1630, 2142, 2638
BstSFI CTRYAG 2 cut(s) 471, 2725
BstSLI GKGCMC 1 cut(s) 1722
BstSNI TACGTA 1 cut(s) 2415
BstUI CGCG 2 cut(s) 1435, 2837
BstV2I GAAGAC 2 cut(s) 363, 606
BstX2I RGATCY 4 cut(s) 523, 662, 2314, 2861
BstYI RGATCY 4 cut(s) 523, 662, 2314, 2861
BsuRI GGCC 3 cut(s) 1050, 1091, 1720
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 8 cut(s) 247, 764, 1302, 1709, 1744, 2635, 2668, 2806
BtsI GCAGTG 3 cut(s) 1122, 2472, 2722
BtsIMutI CAGTG 8 cut(s) 38, 775, 916, 1122, 1847, 1900, 2472, 2722
CciI TCATGA 2 cut(s) 217, 2590
CfoI GCGC 1 cut(s) 1328
Cfr10I RCCGGY 2 cut(s) 796, 1149
Cfr13I GGNCC 6 cut(s) 1090, 1363, 1718, 1719, 2047, 2584
CseI GACGC 3 cut(s) 962, 2409, 2843
CsiI ACCWGGT 1 cut(s) 2142
Csp6I GTAC 4 cut(s) 668, 2357, 2660, 2694
CspAI ACCGGT 1 cut(s) 796
CspCI CAANNNNNGTGG 2 cut(s) 1836, 1871
CviQI GTAC 4 cut(s) 668, 2357, 2660, 2694
DraI TTTAAA 1 cut(s) 1890
DraIII CACNNNGTG 1 cut(s) 2533
EaeI YGGCCR 1 cut(s) 1048
Eam1104I CTCTTC 3 cut(s) 1620, 2064, 2860
EarI CTCTTC 3 cut(s) 1620, 2064, 2860
Ecl136II GAGCTC 1 cut(s) 2686
Eco105I TACGTA 1 cut(s) 2415
Eco130I CCWWGG 4 cut(s) 111, 199, 351, 2128
Eco24I GRGCYC 2 cut(s) 1722, 2688
Eco31I GGTCTC 1 cut(s) 1678
Eco47I GGWCC 3 cut(s) 1363, 2047, 2584
Eco53kI GAGCTC 1 cut(s) 2686
Eco57I CTGAAG 1 cut(s) 1430
Eco88I CYCGRG 1 cut(s) 2307
EcoICRI GAGCTC 1 cut(s) 2686
EcoO109I RGGNCCY 2 cut(s) 1718, 1719
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 2142, 2638
EcoT14I CCWWGG 4 cut(s) 111, 199, 351, 2128
EcoT38I GRGCYC 2 cut(s) 1722, 2688
ErhI CCWWGG 4 cut(s) 111, 199, 351, 2128
FalI AAGNNNNNCTT 8 cut(s) 1165, 1197, 1707, 1739, 2074, 2106, 2078, 2110
FaqI GGGAC 2 cut(s) 799, 2659
FbaI TGATCA 1 cut(s) 2814
FokI GGATG 8 cut(s) 254, 751, 1289, 1696, 1731, 2622, 2655, 2813
FriOI GRGCYC 2 cut(s) 1722, 2688
FspBI CTAG 5 cut(s) 984, 1256, 1290, 1644, 2166
GlaI GCGC 1 cut(s) 1327
GsuI CTGGAG 4 cut(s) 2253, 2278, 2556, 2661
HaeIII GGCC 3 cut(s) 1050, 1091, 1720
HapII CCGG 8 cut(s) 797, 1051, 1150, 1632, 1671, 2441, 2609, 2859
HgaI GACGC 3 cut(s) 962, 2409, 2843
HhaI GCGC 1 cut(s) 1328
Hin6I GCGC 1 cut(s) 1326
HinP1I GCGC 1 cut(s) 1326
HincII GTYRAC 1 cut(s) 2392
HindII GTYRAC 1 cut(s) 2392
HindIII AAGCTT 4 cut(s) 1295, 1406, 2152, 2276
HpaI GTTAAC 1 cut(s) 2392
HpaII CCGG 8 cut(s) 797, 1051, 1150, 1632, 1671, 2441, 2609, 2859
HphI GGTGA 1 cut(s) 953
Hpy166II GTNNAC 6 cut(s) 1160, 1415, 2357, 2392, 2477, 2660
Hpy8I GTNNAC 6 cut(s) 1160, 1415, 2357, 2392, 2477, 2660
HpyAV CCTTC 8 cut(s) 370, 850, 1191, 1668, 1698, 1709, 2004, 2102
HpyCH4III ACNGT 4 cut(s) 1380, 1895, 2492, 2741
HpyCH4IV ACGT 3 cut(s) 2373, 2414, 2529
HpySE526I ACGT 3 cut(s) 2373, 2414, 2529
HspAI GCGC 1 cut(s) 1326
Kpn2I TCCGGA 2 cut(s) 2608, 2858
KroI GCCGGC 1 cut(s) 1149
KroNI GCCGGC 1 cut(s) 1151
Ksp22I TGATCA 1 cut(s) 2814
KspAI GTTAAC 1 cut(s) 2392
LmnI GCTCC 6 cut(s) 31, 88, 1106, 2272, 2575, 2683
LweI GCATC 7 cut(s) 100, 261, 1718, 1780, 2519, 2644, 2791
MabI ACCWGGT 1 cut(s) 2142
MaeI CTAG 5 cut(s) 984, 1256, 1290, 1644, 2166
MaeII ACGT 3 cut(s) 2373, 2414, 2529
MaeIII GTNAC 7 cut(s) 941, 1118, 1496, 1609, 2146, 2326, 2421
MfeI CAATTG 3 cut(s) 1329, 1770, 2019
MflI RGATCY 4 cut(s) 523, 662, 2314, 2861
MhlI GDGCHC 5 cut(s) 508, 613, 838, 1722, 2688
MluI ACGCGT 1 cut(s) 1433
MlyI GAGTC 3 cut(s) 722, 1481, 2846
MmeI TCCRAC 2 cut(s) 875, 1576
MroI TCCGGA 2 cut(s) 2608, 2858
MroNI GCCGGC 1 cut(s) 1149
MroXI GAANNNNTTC 4 cut(s) 360, 1443, 1874, 2288
MseI TTAA 9 cut(s) 66, 320, 920, 1539, 1889, 1911, 2391, 2460, 2820
MslI CAYNNNNRTG 5 cut(s) 371, 1167, 1605, 1788, 2799
MspI CCGG 8 cut(s) 797, 1051, 1150, 1632, 1671, 2441, 2609, 2859
MspR9I CCNGG 3 cut(s) 1632, 2144, 2640
MssI GTTTAAAC 1 cut(s) 1890
MunI CAATTG 3 cut(s) 1329, 1770, 2019
Mva1269I GAATGC 3 cut(s) 142, 185, 2754
MvaI CCWGG 2 cut(s) 2144, 2640
MvnI CGCG 2 cut(s) 1435, 2837
NaeI GCCGGC 1 cut(s) 1151
NciI CCSGG 1 cut(s) 1632
NcoI CCATGG 1 cut(s) 199
NgoMIV GCCGGC 1 cut(s) 1149
NheI GCTAGC 1 cut(s) 1643
NlaIV GGNNCC 6 cut(s) 1720, 1721, 2439, 2445, 2571, 2586
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 4 cut(s) 941, 1118, 2146, 2421
NspI RCATGY 5 cut(s) 596, 1019, 1166, 2507, 2519
NspV TTCGAA 1 cut(s) 2282
PaeI GCATGC 1 cut(s) 2507
PagI TCATGA 2 cut(s) 217, 2590
PciI ACATGT 1 cut(s) 1162
PctI GAATGC 3 cut(s) 142, 185, 2754
PdiI GCCGGC 1 cut(s) 1151
PdmI GAANNNNTTC 4 cut(s) 360, 1443, 1874, 2288
PflFI GACNNNGTC 1 cut(s) 972
PfoI TCCNGGA 2 cut(s) 1630, 2638
PinAI ACCGGT 1 cut(s) 796
PleI GAGTC 3 cut(s) 721, 1480, 2846
PmeI GTTTAAAC 1 cut(s) 1890
PpsI GAGTC 3 cut(s) 721, 1480, 2846
Ppu21I YACGTR 1 cut(s) 2415
PscI ACATGT 1 cut(s) 1162
PshAI GACNNNNGTC 1 cut(s) 2651
PsiI TTATAA 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 2688
Psp6I CCWGG 2 cut(s) 2142, 2638
PspGI CCWGG 2 cut(s) 2142, 2638
PspN4I GGNNCC 6 cut(s) 1720, 1721, 2439, 2445, 2571, 2586
PspOMI GGGCCC 1 cut(s) 1718
PspPI GGNCC 6 cut(s) 1090, 1363, 1718, 1719, 2047, 2584
PstI CTGCAG 2 cut(s) 475, 2729
PsuI RGATCY 4 cut(s) 523, 662, 2314, 2861
PsyI GACNNNGTC 1 cut(s) 972
RsaI GTAC 4 cut(s) 669, 2358, 2661, 2695
RsaNI GTAC 4 cut(s) 668, 2357, 2660, 2694
RseI CAYNNNNRTG 5 cut(s) 371, 1167, 1605, 1788, 2799
SacI GAGCTC 1 cut(s) 2688
SaqAI TTAA 9 cut(s) 66, 320, 920, 1539, 1889, 1911, 2391, 2460, 2820
Sau96I GGNCC 6 cut(s) 1090, 1363, 1718, 1719, 2047, 2584
SchI GAGTC 3 cut(s) 722, 1481, 2846
ScrFI CCNGG 3 cut(s) 1632, 2144, 2640
SduI GDGCHC 5 cut(s) 508, 613, 838, 1722, 2688
SexAI ACCWGGT 1 cut(s) 2142
SfaNI GCATC 7 cut(s) 100, 261, 1718, 1780, 2519, 2644, 2791
SfcI CTRYAG 2 cut(s) 471, 2725
SfuI TTCGAA 1 cut(s) 2282
SinI GGWCC 3 cut(s) 1363, 2047, 2584
SmiMI CAYNNNNRTG 5 cut(s) 371, 1167, 1605, 1788, 2799
SmlI CTYRAG 1 cut(s) 867
SmoI CTYRAG 1 cut(s) 867
SnaBI TACGTA 1 cut(s) 2415
SphI GCATGC 1 cut(s) 2507
SsiI CCGC 1 cut(s) 2582
SspI AATATT 1 cut(s) 1733
SspMI CTAG 5 cut(s) 984, 1256, 1290, 1644, 2166
SstI GAGCTC 1 cut(s) 2688
StyD4I CCNGG 3 cut(s) 1630, 2142, 2638
StyI CCWWGG 4 cut(s) 111, 199, 351, 2128
TaaI ACNGT 4 cut(s) 1380, 1895, 2492, 2741
TaiI ACGT 3 cut(s) 2376, 2417, 2532
TaqI TCGA 6 cut(s) 597, 613, 716, 2014, 2067, 2282
TatI WGTACW 3 cut(s) 667, 2356, 2659
Tru1I TTAA 9 cut(s) 66, 320, 920, 1539, 1889, 1911, 2391, 2460, 2820
Tru9I TTAA 9 cut(s) 66, 320, 920, 1539, 1889, 1911, 2391, 2460, 2820
TscAI CASTG 8 cut(s) 45, 775, 916, 1129, 1854, 1900, 2472, 2729
TseFI GTSAC 4 cut(s) 941, 1118, 2146, 2421
Tsp45I GTSAC 4 cut(s) 941, 1118, 2146, 2421
TspRI CASTG 8 cut(s) 45, 775, 916, 1129, 1854, 1900, 2472, 2729
Tth111I GACNNNGTC 1 cut(s) 972
VpaK11BI GGWCC 3 cut(s) 1363, 2047, 2584
XapI RAATTY 4 cut(s) 1043, 1243, 1312, 1440
XbaI TCTAGA 2 cut(s) 1255, 2165
XceI RCATGY 5 cut(s) 596, 1019, 1166, 2507, 2519
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XmnI GAANNNNTTC 4 cut(s) 360, 1443, 1874, 2288
XspI CTAG 5 cut(s) 984, 1256, 1290, 1644, 2166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.