RchiOBHm_Chr3g0476181

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000084
Physical Location & Seq
Reverse (-)
22153871 .. 22154705
835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44161

Sequence Viewer

Length: 765 bp
ATGCTAGTATTTAGGGGTACATGTGTATTAACTGAGATTGTGTTGTTATGTTCTCAGGCTGATGAGGAGGGCAAAAGTAAAGATTGGATTGATGAGTTGCCGAGTTGTATTGTCTCATACATACTTTCCTTGTTAACCATAAAAGATGCATGGGATGCAAGCTTGGTATCCCGTCGTTGGCATGAACATTTGTGGAATTCAATATTAACAAGGCCCAATCTTGAATTTGACATTCCAAACATTTTTGGAAGTAGATATGCTGGAGCCAAGTTTACTGATACTACATCGGATAGCATTCGTTTGATAAATCAATTTAAAACACCAGACTTTGTACAACGTGTGAATGCAGTTTTGAAGCACTACCGTGGTAAGAAGGTAGAGTCTTTCAAAGTGGCTTTCTTTCTTGATGGATCTACTGCCGACCTTGATAACTGGATTCGTTTTGCAATTACAAAGGGAGTTGAGGTCCTTCATCTTCATTTGTTTCAAGACCCCATCCATGGAACAAAGAAATATGTTTTTCCTTATGAGTTACTTTCGGAACTGAAATCTTCCACTCTGAAGCACCTGTCATTGCACAGATGTGTTCTACGACCTTCCCCTGATCATTTTGACAGATTCAATCAGCTAACAAGTCTTTGTCTTAATCAAGTCGACCTGGGTGAAACATTTCTTCAGGCATGTATGTTCTCCGTTTGTTTGTTCCTCGAGAGCTTGACCTTGATTCGTGTTTTAACTTATCAAGAATTGAGATTTCAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

254

Amino Acids

29.4

Weight (kDa)

6.79

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 117 - 243 1.7e-18 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 142 - 244 5.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 654
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 196, 224
AcuI CTGAAG 2 cut(s) 581, 659
AfaI GTAC 2 cut(s) 19, 333
AfiI CCNNNNNNNGG 2 cut(s) 177, 500
AflIII ACRYGT 2 cut(s) 20, 337
AgsI TTSAA 6 cut(s) 201, 224, 355, 388, 488, 622
AjnI CCWGG 1 cut(s) 657
AleI CACNNNNGTG 2 cut(s) 363, 582
AluBI AGCT 3 cut(s) 162, 628, 714
AluI AGCT 3 cut(s) 162, 628, 714
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 196, 224
Asp700I GAANNNNTTC 1 cut(s) 669
AspS9I GGNCC 2 cut(s) 213, 466
AsuHPI GGTGA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BccI CCATC 2 cut(s) 401, 503
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 5
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 659
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 213, 466
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 2 cut(s) 136, 145
BpmI CTGGAG 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 364, 499, 658
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 500
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 364, 499, 658
BseGI GGATG 2 cut(s) 160, 495
BseLI CCNNNNNNNGG 2 cut(s) 177, 500
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 24, 68
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 177, 500
BsmAI GTCTC 1 cut(s) 118
BsmI GAATGC 2 cut(s) 294, 349
BsnI GGCC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 707
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 410, 604
Bsp19I CCATGG 1 cut(s) 499
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 25, 67
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 572
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 3 cut(s) 364, 499, 658
BssMI GATC 2 cut(s) 410, 604
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 33, 54
BstDSI CCRYGG 2 cut(s) 364, 499
BstF5I GGATG 2 cut(s) 160, 495
BstKTI GATC 2 cut(s) 413, 607
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 410, 604
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 24, 684
BstSCI CCNGG 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 2 cut(s) 364, 499
BtsCI GGATG 2 cut(s) 160, 495
Cac8I GCNNGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 213, 466
Csp6I GTAC 2 cut(s) 18, 332
CviAII CATG 5 cut(s) 21, 150, 182, 500, 681
CviJI RGCY 7 cut(s) 59, 162, 214, 266, 395, 628, 714
CviKI_1 RGCY 7 cut(s) 59, 162, 214, 266, 395, 628, 714
CviQI GTAC 2 cut(s) 18, 332
DdeI CTNAG 2 cut(s) 33, 54
DpnI GATC 2 cut(s) 412, 606
DpnII GATC 2 cut(s) 410, 604
DraI TTTAAA 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 581, 659
Eco88I CYCGRG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 5 cut(s) 24, 153, 185, 503, 684
FatI CATG 5 cut(s) 20, 149, 181, 499, 680
FbaI TGATCA 1 cut(s) 604
FblI GTMKAC 1 cut(s) 654
FokI GGATG 2 cut(s) 167, 482
FspBI CTAG 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 5 cut(s) 24, 153, 185, 503, 684
HincII GTYRAC 2 cut(s) 135, 655
HindII GTYRAC 2 cut(s) 135, 655
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 4 cut(s) 380, 436, 618, 724
HpaI GTTAAC 1 cut(s) 135
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 3 cut(s) 135, 273, 655
Hpy188I TCNGA 3 cut(s) 289, 541, 561
Hpy188III TCNNGA 5 cut(s) 221, 404, 488, 709, 743
Hpy8I GTNNAC 3 cut(s) 135, 273, 655
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 367, 479, 606
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 5 cut(s) 149, 158, 347, 446, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 33, 54
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 5 cut(s) 24, 153, 185, 503, 684
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 410, 604
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 9 cut(s) 41, 246, 336, 418, 581, 615, 644, 662, 671
LweI GCATC 2 cut(s) 136, 145
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 531
MalI GATC 2 cut(s) 412, 606
MboI GATC 2 cut(s) 410, 604
MboII GAAGA 3 cut(s) 467, 543, 665
MflI RGATCY 1 cut(s) 410
MluCI AATT 5 cut(s) 196, 224, 311, 447, 746
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 4 cut(s) 58, 61, 457, 716
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 7 cut(s) 29, 134, 206, 315, 645, 734, 763
MslI CAYNNNNRTG 2 cut(s) 363, 582
MspR9I CCNGG 1 cut(s) 659
Mva1269I GAATGC 2 cut(s) 294, 349
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 499
NdeII GATC 2 cut(s) 410, 604
NlaIII CATG 5 cut(s) 24, 153, 185, 503, 684
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 2 cut(s) 24, 684
OliI CACNNNNGTG 2 cut(s) 363, 582
PaeR7I CTCGAG 1 cut(s) 707
PciI ACATGT 1 cut(s) 20
PctI GAATGC 2 cut(s) 294, 349
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 3 cut(s) 436, 618, 724
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 466
PscI ACATGT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 2 cut(s) 213, 466
PspPPI RGGWCCY 1 cut(s) 466
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 19, 333
RsaNI GTAC 2 cut(s) 18, 332
RseI CAYNNNNRTG 2 cut(s) 363, 582
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 7 cut(s) 29, 134, 206, 315, 645, 734, 763
Sau3AI GATC 2 cut(s) 410, 604
Sau96I GGNCC 2 cut(s) 213, 466
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 659
SfaNI GCATC 2 cut(s) 136, 145
Sfr274I CTCGAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 363, 582
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 5 cut(s) 196, 224, 311, 447, 746
SspI AATATT 1 cut(s) 204
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 654, 708
TasI AATT 5 cut(s) 196, 224, 311, 447, 746
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 3 cut(s) 436, 618, 724
Tru1I TTAA 7 cut(s) 29, 134, 206, 315, 645, 734, 763
Tru9I TTAA 7 cut(s) 29, 134, 206, 315, 645, 734, 763
TspDTI ATGAA 3 cut(s) 198, 461, 467
TspGWI ACGGA 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 2 cut(s) 196, 224
XceI RCATGY 2 cut(s) 24, 684
XhoI CTCGAG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.