Rroxscaffold_2G00083430

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000084
Physical Location & Seq
Reverse (-)
6061434 .. 6062623
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083430.1

Sequence Viewer

Length: 822 bp
ATGGATTTGAACGCATCAACCCTAAAGCATTTGTCGTTGTATCGATGTGTTCTAAAACCTCCTACTGATTTTGACAGATTCATTCAGCTAGAAACTCTTTCTCTGAATGACGTTGTAGTCGATCCAGATTTTTTGGCACGTCTTTTCTCTGCTTGTGTGCTTCTCGAAAGCTTCACCTTGAACACATGTGATGTGCGCTCAAATCTGATTATTGGTCCAGTTCCTCATGTGCTAACCCAACTCCCCCTGTGTTCTGAGCTTGGGACTCTTCATCTGCAGCCCAGAGATAATTTCGAACACATACCCCAAACTTTTCCAACATTGAGAAACCTAAAGCAAGTGAAGTTGGATCTCCTCATGCTTGACTTTGAACTTGGGAGTGTTCTAAATATTCTCAAGGCTGCACCTCTTTTGGAAGAACTTACAATAACAACACAAGCTACAGACTATCACGGAGAGATGAGGAATCTTTCTACATTCTCACATAATCATTTGAGAAAAATAAAGATGCAGGGGTTCCAAGGTATGTGGTTTGAGATAGAGTTGGCCATTTGCCTTCTTAAAATTGCAACAAAGCTTGAGGTAATGGTGATTGATCCACATGGATCACTCTACGACGGTGATGGAACGTGGGTCAAAATGACCTGTTGTTATCAGGATGGGAACGAGGATGAGAACCCAGAGGAATATGAGGACACAGACGAAGATGAGAATGTGGAGAATGTGCCTTATGAACTTTTCCGTTGGCAAAAAAGAGGCAGGGCAGCGGTCCAAGAAAGGCTGAAAGATGTAAAGAGTGATGCTCAAATCATCATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

273

Amino Acids

31.31

Weight (kDa)

4.81

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 4 - 81 8.8e-09 At1g61320/AtMIF1, LRR domain
LRR_At1g61320_AtMIF1 PF23622 78 - 203 2.6e-09 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AciI CCGC 1 cut(s) 767
AclWI GGATC 4 cut(s) 116, 357, 590, 613
AcoI YGGCCR 1 cut(s) 546
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 10, 181, 371
AjiI CACGTC 1 cut(s) 140
AluBI AGCT 5 cut(s) 88, 171, 259, 440, 577
AluI AGCT 5 cut(s) 88, 171, 259, 440, 577
AlwI GGATC 4 cut(s) 116, 357, 590, 613
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 3 cut(s) 277, 401, 764
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 215, 769
AsuHPI GGTGA 3 cut(s) 166, 601, 632
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 2 cut(s) 215, 769
BalI TGGCCA 1 cut(s) 548
BbvI GCAGC 3 cut(s) 289, 388, 776
BccI CCATC 2 cut(s) 617, 653
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 2 cut(s) 275, 441
BisI GCNGC 3 cut(s) 278, 402, 765
BlsI GCNGC 3 cut(s) 279, 403, 766
Bme18I GGWCC 2 cut(s) 215, 769
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 215, 769
BmiI GGNNCC 1 cut(s) 518
BmsI GCATC 3 cut(s) 23, 498, 790
BplI GAGNNNNNCTC 2 cut(s) 787, 819
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 380, 599
Bsa29I ATCGAT 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 3 cut(s) 664, 676, 813
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 289, 388, 776
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 548
BshVI ATCGAT 1 cut(s) 43
BslFI GGGAC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 4 cut(s) 121, 349, 595, 605
BspACI CCGC 1 cut(s) 767
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 518
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 4 cut(s) 116, 357, 590, 613
BspT104I TTCGAA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 4 cut(s) 121, 349, 595, 605
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 1 cut(s) 273
BstBI TTCGAA 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 664, 676, 813
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 124, 352, 598, 608
BstMBI GATC 4 cut(s) 121, 349, 595, 605
BstNSI RCATGY 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 275, 441
BstV1I GCAGC 3 cut(s) 289, 388, 776
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 43
BsuRI GGCC 1 cut(s) 548
BsuTUI ATCGAT 1 cut(s) 43
BtrI CACGTC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 664, 676, 813
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 215, 769
ClaI ATCGAT 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 509, 544
CviAII CATG 4 cut(s) 186, 227, 358, 602
CviJI RGCY 9 cut(s) 88, 171, 259, 280, 401, 440, 548, 577, 781
CviKI_1 RGCY 9 cut(s) 88, 171, 259, 280, 401, 440, 548, 577, 781
DdeI CTNAG 1 cut(s) 255
DpnI GATC 4 cut(s) 123, 351, 597, 607
DpnII GATC 4 cut(s) 121, 349, 595, 605
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 215, 769
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 4 cut(s) 189, 230, 361, 605
FaiI YATR 9 cut(s) 187, 228, 302, 359, 486, 527, 603, 690, 732
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 185, 226, 357, 601
Fnu4HI GCNGC 3 cut(s) 278, 402, 765
FokI GGATG 3 cut(s) 671, 683, 800
Fsp4HI GCNGC 3 cut(s) 278, 402, 765
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 278, 402, 765
HaeIII GGCC 1 cut(s) 548
HhaI GCGC 1 cut(s) 198
Hin1II CATG 4 cut(s) 189, 230, 361, 605
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 169, 575
HinfI GANTC 3 cut(s) 78, 265, 466
HphI GGTGA 3 cut(s) 166, 601, 632
Hpy188I TCNGA 3 cut(s) 105, 207, 256
Hpy188III TCNNGA 3 cut(s) 125, 164, 656
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 3 cut(s) 111, 139, 629
HpyCH4V TGCA 4 cut(s) 277, 404, 511, 569
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 3 cut(s) 111, 139, 629
Hsp92II CATG 4 cut(s) 189, 230, 361, 605
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 4 cut(s) 121, 349, 595, 605
LpnPI CCDG 9 cut(s) 138, 231, 260, 295, 497, 641, 658, 693, 745
Lsp1109I GCAGC 3 cut(s) 289, 388, 776
LweI GCATC 3 cut(s) 23, 498, 790
MaeI CTAG 1 cut(s) 89
MaeII ACGT 3 cut(s) 111, 139, 629
MalI GATC 4 cut(s) 123, 351, 597, 607
MboI GATC 4 cut(s) 121, 349, 595, 605
MboII GAAGA 3 cut(s) 260, 428, 716
MflI RGATCY 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 2 cut(s) 289, 564
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 2 cut(s) 327, 341
Mox20I TGGCCA 1 cut(s) 548
MscI TGGCCA 1 cut(s) 548
MseI TTAA 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 767
NdeII GATC 4 cut(s) 121, 349, 595, 605
NlaIII CATG 4 cut(s) 189, 230, 361, 605
NlaIV GGNNCC 1 cut(s) 518
NspI RCATGY 1 cut(s) 189
NspV TTCGAA 1 cut(s) 294
PciI ACATGT 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 2 cut(s) 78, 466
PkrI GCNGC 3 cut(s) 279, 403, 766
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PscI ACATGT 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 2 cut(s) 215, 769
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 349
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 3 cut(s) 278, 402, 765
Sau3AI GATC 4 cut(s) 121, 349, 595, 605
Sau96I GGNCC 2 cut(s) 215, 769
SchI GAGTC 1 cut(s) 259
SfaNI GCATC 3 cut(s) 23, 498, 790
SfcI CTRYAG 2 cut(s) 275, 441
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 2 cut(s) 215, 769
SmlI CTYRAG 2 cut(s) 395, 578
SmoI CTYRAG 2 cut(s) 395, 578
Sse9I AATT 2 cut(s) 289, 564
SsiI CCGC 1 cut(s) 767
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 3 cut(s) 114, 142, 632
TaqI TCGA 4 cut(s) 43, 120, 165, 294
TasI AATT 2 cut(s) 289, 564
TfiI GAWTC 2 cut(s) 78, 466
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseI GCWGC 3 cut(s) 277, 401, 764
TspDTI ATGAA 3 cut(s) 70, 260, 747
TspGWI ACGGA 2 cut(s) 468, 731
VpaK11BI GGWCC 2 cut(s) 215, 769
XceI RCATGY 1 cut(s) 189
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.