Rh5DG061800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000084
Physical Location & Seq
Forward (+)
5277369 .. 5278763
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG061800.1

Sequence Viewer

Length: 1395 bp
ATGGTGTCTCGCTTGCAGAGAAGGAAATTAAGAAGTACTCGAAAGAGAAAACAAACGAGGAAGAGAAGATGTCGAATTGCCGATCTGCCGGATTGCATTCTGGAATTCATACTTTCATTGATACCTCTAAGAGACGCAGTAGAAACTAGCCTGGTTTGCCGTGATTGGAGGCCCTTTTTACTAAAACGGCGCAATCTGGTATTTGACTTCGAGGGGTATGTTAGGAGGCCGCCACAGTTTGAAAAACGTGTGGATACATATTTGCAGCTGTATAAAGGTGACAAGGTCGACTCTTTCACAGTGGAGTTCACTGATCAAGAAGGTGGCGACGTCCTTGACCGATGGATCCGTTTCGCAATTACCAAGGGAGTTGAAGAACTTCATCTTCGACATCACGTTTTTGATTATGTTTTCCCTCACTGGTTACTTTCTGAACAAGTAAACGCAGGCTCAAGAGTTAATCTAAAAGTTCTGTCAATATGTAGCATTGATGGTATTTTACGACCTCCTCCTGATTTTAGCGGATTCAATCAGCTAAAGACTCTTCATCTAATTCATGCTATCATCGATCCAAGTTTTACGTCAAATCTCTTTTCTGTCTTTGTGTCCCTCGAAAGCTTGACCTTATATCGCTGCAGGCTTGGTCGATATCTTGCTAATACTAGAACTGATCTGAATATTGTTGCCGGTGATCGTCTAACTGAACTGATAGTCATGGATTGCGGCCCAGCCAAAATCAAAATTTCTGCACAAAATCTCGCCTCCTTGGAATATATTAATAATCATTGGACCTCTCTTTCTATCAAAACTCCGCGTTTAGCAAGAATTTATTTGCCAGACACTGTTCACGATCCATTGTTACCTCATGTTCTAACACAATTTGCGACGTGTTCTGAGCTCGACTCTCTTTTTCTGCGGATGTACCCGGAAACCCTAATCAATTTCAGCATGCCAGCTTTTGGAAATTTGAGGAAATTGAAGGTGGATATCTGCATCGAATATGGTCGTCCATACAATGATGACAATCTTCTTCGCTTTCTGGATTTTCTCAAGGCTGCACCCGTTTTGGAAGAGCTTGTAACAGCTTTGATTGACCTCAAGTTTACTGACACTACTGATGAACGAGAGATAAGGAATGTTTCTGGATTTACACATGATAACTTGAAATTAGTTAAGATGAAGAGTTTCCACGGTCACTGGTCCGAAATAGAGTTTGCGATTTGTATTCTCAAGTACACAACAAATCTCAAGATAATGGAAATTGGGCCTTTCGCAAGAAGCGTTTCTGGTGACTACTTTCGGGAGAAGGTGAATTATCCAGAACGACCTAGGGCAATTATGAAAGAAAAAATCAAGGAAGTAAAGACCGATGCTCAAATTATATTTCTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

464

Amino Acids

54.05

Weight (kDa)

9.12

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 105 - 455 9.4e-29 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 112 - 216 6.5e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 959
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 814
AciI CCGC 5 cut(s) 230, 522, 723, 812, 916
AclWI GGATC 4 cut(s) 340, 353, 563, 845
AcsI RAATTY 4 cut(s) 104, 741, 825, 964
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 3 cut(s) 37, 923, 1235
AfiI CCNNNNNNNGG 1 cut(s) 959
AflIII ACRYGT 2 cut(s) 247, 887
AgsI TTSAA 5 cut(s) 242, 374, 529, 979, 1165
AjiI CACGTC 1 cut(s) 888
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 7 cut(s) 268, 535, 618, 898, 956, 1075, 1085
AluI AGCT 7 cut(s) 268, 535, 618, 898, 956, 1075, 1085
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 2 cut(s) 12, 126
AlwI GGATC 4 cut(s) 340, 353, 563, 845
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 4 cut(s) 170, 227, 724, 1265
ApeKI GCWGC 3 cut(s) 265, 633, 1055
ApoI RAATTY 4 cut(s) 104, 741, 825, 964
AseI ATTAAT 1 cut(s) 777
Asp700I GAANNNNTTC 3 cut(s) 378, 1184, 1282
AspA2I CCTAGG 1 cut(s) 1328
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 5 cut(s) 171, 725, 789, 1200, 1265
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 4 cut(s) 290, 701, 1301, 1321
AvaII GGWCC 2 cut(s) 789, 1200
AvrII CCTAGG 1 cut(s) 1328
BamHI GGATCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 3 cut(s) 277, 620, 1042
BccI CCATC 2 cut(s) 336, 485
BceAI ACGGC 2 cut(s) 144, 203
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 2 cut(s) 12, 126
BfaI CTAG 3 cut(s) 147, 663, 1329
BfmI CTRYAG 1 cut(s) 634
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 5 cut(s) 230, 266, 634, 724, 1056
BlnI CCTAGG 1 cut(s) 1328
BlsI GCNGC 5 cut(s) 231, 267, 635, 725, 1057
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 152, 926
Bme18I GGWCC 2 cut(s) 789, 1200
BmgBI CACGTC 1 cut(s) 888
BmgT120I GGNCC 5 cut(s) 171, 725, 789, 1200, 1265
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 152, 926
BmsI GCATC 2 cut(s) 1002, 1360
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpuEI CTTGAG 5 cut(s) 436, 1034, 1082, 1214, 1232
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 363, 765, 1189, 1328
Bsc4I CCNNNNNNNGG 1 cut(s) 959
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 2 cut(s) 425, 1202
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 567
BseDI CCNNGG 4 cut(s) 363, 765, 1189, 1328
BseGI GGATG 1 cut(s) 924
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 1 cut(s) 959
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 2 cut(s) 425, 1202
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 3 cut(s) 277, 620, 1042
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 2 cut(s) 732, 1041
Bsh1236I CGCG 1 cut(s) 814
BshFI GGCC 4 cut(s) 172, 229, 726, 1267
BshVI ATCGAT 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 3 cut(s) 89, 687, 926
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 1 cut(s) 959
BsmAI GTCTC 2 cut(s) 12, 126
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 4 cut(s) 172, 229, 726, 1267
Bsp1286I GDGCHC 1 cut(s) 900
Bsp143I GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
BspACI CCGC 5 cut(s) 230, 522, 723, 812, 916
BspANI GGCC 4 cut(s) 172, 229, 726, 1267
BspCNI CTCAG 1 cut(s) 886
BspDI ATCGAT 1 cut(s) 567
BspFNI CGCG 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 638
BspPI GGATC 4 cut(s) 340, 353, 563, 845
BspQI GCTCTTC 1 cut(s) 1065
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 2 cut(s) 425, 1202
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 4 cut(s) 363, 765, 1189, 1328
BssMI GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 3 cut(s) 363, 765, 1328
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 237, 301, 844, 1193
Bst6I CTCTTC 4 cut(s) 56, 549, 1065, 1175
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 5 cut(s) 14, 448, 638, 950, 954
BstDEI CTNAG 2 cut(s) 128, 894
BstDSI CCRYGG 1 cut(s) 1189
BstF5I GGATG 1 cut(s) 924
BstFNI CGCG 1 cut(s) 814
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 7 cut(s) 85, 316, 348, 571, 673, 694, 853
BstMAI GTCTC 2 cut(s) 12, 126
BstMBI GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 952
BstSCI CCNGG 2 cut(s) 150, 924
BstSFI CTRYAG 1 cut(s) 634
BstUI CGCG 1 cut(s) 814
BstV1I GCAGC 3 cut(s) 277, 620, 1042
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 567
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 4 cut(s) 172, 229, 726, 1267
BsuTUI ATCGAT 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 1189
BtrI CACGTC 1 cut(s) 888
BtsCI GGATG 1 cut(s) 924
BtsIMutI CAGTG 5 cut(s) 306, 309, 418, 840, 1195
Cac8I GCNNGC 5 cut(s) 14, 448, 638, 950, 954
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 5 cut(s) 171, 725, 789, 1200, 1265
ClaI ATCGAT 1 cut(s) 567
CseI GACGC 1 cut(s) 143
Csp6I GTAC 3 cut(s) 36, 922, 1234
CviAII CATG 5 cut(s) 557, 715, 866, 949, 1154
CviQI GTAC 3 cut(s) 36, 922, 1234
DdeI CTNAG 2 cut(s) 128, 894
DpnI GATC 7 cut(s) 84, 315, 347, 570, 672, 693, 852
DpnII GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
Eam1104I CTCTTC 4 cut(s) 56, 549, 1065, 1175
EarI CTCTTC 4 cut(s) 56, 549, 1065, 1175
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 3 cut(s) 363, 765, 1328
Eco24I GRGCYC 1 cut(s) 900
Eco32I GATATC 2 cut(s) 650, 988
Eco47I GGWCC 2 cut(s) 789, 1200
Eco53kI GAGCTC 1 cut(s) 898
EcoICRI GAGCTC 1 cut(s) 898
EcoO109I RGGNCCY 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 2 cut(s) 650, 988
EcoT14I CCWWGG 3 cut(s) 363, 765, 1328
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 363, 765, 1328
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 560, 718, 869, 952, 1157
FaqI GGGAC 1 cut(s) 592
FatI CATG 5 cut(s) 556, 714, 865, 948, 1153
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 230, 266, 634, 724, 1056
FokI GGATG 1 cut(s) 931
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 5 cut(s) 230, 266, 634, 724, 1056
FspBI CTAG 3 cut(s) 147, 663, 1329
GlaI GCGC 1 cut(s) 191
GluI GCNGC 5 cut(s) 230, 266, 634, 724, 1056
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 4 cut(s) 172, 229, 726, 1267
HapII CCGG 3 cut(s) 89, 687, 926
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 5 cut(s) 560, 718, 869, 952, 1157
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 4 cut(s) 290, 525, 541, 902
HpaII CCGG 3 cut(s) 89, 687, 926
HphI GGTGA 4 cut(s) 290, 701, 1301, 1321
Hpy166II GTNNAC 6 cut(s) 289, 309, 442, 847, 1104, 1236
Hpy188I TCNGA 4 cut(s) 433, 675, 895, 1204
Hpy8I GTNNAC 6 cut(s) 289, 309, 442, 847, 1104, 1236
Hpy99I CGWCG 2 cut(s) 332, 889
HpyAV CCTTC 4 cut(s) 15, 314, 973, 1300
HpyCH4III ACNGT 4 cut(s) 237, 301, 844, 1193
HpyCH4IV ACGT 5 cut(s) 247, 330, 396, 581, 887
HpyCH4V TGCA 7 cut(s) 16, 96, 265, 636, 749, 993, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 128, 894
HpySE526I ACGT 5 cut(s) 247, 330, 396, 581, 887
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 5 cut(s) 560, 718, 869, 952, 1157
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
LguI GCTCTTC 1 cut(s) 1065
Lsp1109I GCAGC 3 cut(s) 277, 620, 1042
LweI GCATC 2 cut(s) 1002, 1360
MaeI CTAG 3 cut(s) 147, 663, 1329
MaeII ACGT 5 cut(s) 247, 330, 396, 581, 887
MaeIII GTNAC 6 cut(s) 278, 423, 858, 1078, 1193, 1289
MalI GATC 7 cut(s) 84, 315, 347, 570, 672, 693, 852
MboI GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
MboII GAAGA 9 cut(s) 73, 78, 377, 386, 536, 1019, 1022, 1082, 1192
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 900
MlyI GAGTC 3 cut(s) 284, 535, 896
MroXI GAANNNNTTC 3 cut(s) 378, 1184, 1282
MseI TTAA 4 cut(s) 29, 459, 777, 1173
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 3 cut(s) 89, 687, 926
MspR9I CCNGG 2 cut(s) 152, 926
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 814
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 926
NdeII GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
NlaIII CATG 5 cut(s) 560, 718, 869, 952, 1157
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 3 cut(s) 278, 1193, 1289
NspI RCATGY 1 cut(s) 952
PaeI GCATGC 1 cut(s) 952
PciSI GCTCTTC 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 1278
PctI GAATGC 1 cut(s) 96
PdmI GAANNNNTTC 3 cut(s) 378, 1184, 1282
PfeI GAWTC 1 cut(s) 525
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 5 cut(s) 231, 267, 635, 725, 1057
PleI GAGTC 3 cut(s) 284, 535, 896
PpsI GAGTC 3 cut(s) 284, 535, 896
PshBI ATTAAT 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 5 cut(s) 171, 725, 789, 1200, 1265
PstI CTGCAG 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 37, 923, 1235
RsaNI GTAC 3 cut(s) 36, 922, 1234
SacI GAGCTC 1 cut(s) 900
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 4 cut(s) 29, 459, 777, 1173
SatI GCNGC 5 cut(s) 230, 266, 634, 724, 1056
Sau3AI GATC 7 cut(s) 82, 313, 345, 568, 670, 691, 850
Sau96I GGNCC 5 cut(s) 171, 725, 789, 1200, 1265
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 3 cut(s) 284, 535, 896
ScrFI CCNGG 2 cut(s) 152, 926
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 2 cut(s) 1002, 1360
SfcI CTRYAG 1 cut(s) 634
SinI GGWCC 2 cut(s) 789, 1200
SmlI CTYRAG 5 cut(s) 451, 1049, 1097, 1229, 1247
SmoI CTYRAG 5 cut(s) 451, 1049, 1097, 1229, 1247
SphI GCATGC 1 cut(s) 952
SsiI CCGC 5 cut(s) 230, 522, 723, 812, 916
SspI AATATT 1 cut(s) 679
SspMI CTAG 3 cut(s) 147, 663, 1329
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 2 cut(s) 150, 924
StyI CCWWGG 3 cut(s) 363, 765, 1328
TaaI ACNGT 4 cut(s) 237, 301, 844, 1193
TaiI ACGT 5 cut(s) 250, 333, 399, 584, 890
TaqII GACCGA 2 cut(s) 354, 1382
TatI WGTACW 2 cut(s) 35, 1233
TauI GCSGC 2 cut(s) 232, 726
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 4 cut(s) 29, 459, 777, 1173
Tru9I TTAA 4 cut(s) 29, 459, 777, 1173
TscAI CASTG 5 cut(s) 306, 316, 425, 847, 1202
TseFI GTSAC 3 cut(s) 278, 1193, 1289
TseI GCWGC 3 cut(s) 265, 633, 1055
Tsp45I GTSAC 3 cut(s) 278, 1193, 1289
TspDTI ATGAA 8 cut(s) 97, 105, 371, 536, 545, 1134, 1193, 1355
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 5 cut(s) 306, 316, 425, 847, 1202
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 789, 1200
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 4 cut(s) 104, 741, 825, 964
XceI RCATGY 1 cut(s) 952
XmaJI CCTAGG 1 cut(s) 1328
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 3 cut(s) 378, 1184, 1282
XspI CTAG 3 cut(s) 147, 663, 1329
ZraI GACGTC 1 cut(s) 331
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.