Rw4G000180

MULE transposase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
297679 .. 298724
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000180.1

Sequence Viewer

Length: 735 bp
ATGGAGGAACATGAACAAGACGACGCTAATAATAATGTTTTGGGTGAAGAAGATGGAAATTGTAATACAGAGCAGGGTGGAGGACTACATCAATTTAATGGGTTATCGTATATCAAGTTGCAGAACGAAGACATGATCGGCAAATCATTCAGTACTCTAGAAGAAGCTGATATTTTTTATAATGATTATGCTCACACTATTGGGTTTAGTGTTCGGAAGGATGTAATGCAAAAGTCGGCGAAGAACGAAGTCATTTCAGAGAGGCAATGGTCAGGGGGTTATGTGAATGTTGGATTTGGGGTAAAGGATCTGTACAATAAGTTGGACTCCTCACGTAGGAAAATTATGTTTGAAGGCGACACTGAAGCTGCTCTTGCATACTTGAATGGAAAAGGTGATGGGGATCCAAGGTTCTTTTGCAGTGCCGATGAGGAAAACCGGTTGTGCAACCTTTTTTGGAGAGACTCCATAGCATTGATTGAATATGGTTGTTTTGGAGATGTGTTGTTATTCGATAGCACTTACAACACAAATTGTTATGAGAAGCCGCTGGTTCTGTTTGTTGGATGTAGCAACCACCTCACTAGTGTGGTGTTTGGATGTGTTTTATTGATGGACGAGACTATTGAGTCATATATATGGGTGTTAGAGACCATGGATGACAAGAAACCAAAAGCAGTCCTAACTGACGGTGATCAAGCAATGCGCTTTGCATTAGACAAGGTCCTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

4.46

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 168 - 244 2.1e-14 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AasI GACNNNNNNGTC 1 cut(s) 628
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 315, 398, 411
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 154, 314
AfiI CCNNNNNNNGG 1 cut(s) 336
AgeI ACCGGT 1 cut(s) 438
AgsI TTSAA 3 cut(s) 353, 385, 482
AhlI ACTAGT 1 cut(s) 584
AleI CACNNNNGTG 1 cut(s) 587
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
AluBI AGCT 2 cut(s) 167, 368
AluI AGCT 2 cut(s) 167, 368
Alw26I GTCTC 3 cut(s) 456, 614, 644
AlwI GGATC 3 cut(s) 315, 398, 411
ApeKI GCWGC 1 cut(s) 368
AsiGI ACCGGT 1 cut(s) 438
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 724
AsuHPI GGTGA 3 cut(s) 56, 407, 704
AvaII GGWCC 1 cut(s) 724
BamHI GGATCC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 47, 392, 607
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 456, 614, 644
BcuI ACTAGT 1 cut(s) 584
BfaI CTAG 2 cut(s) 158, 585
BisI GCNGC 2 cut(s) 369, 548
BlsI GCNGC 2 cut(s) 370, 549
BmcAI AGTACT 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 407, 654
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 438
Bse3DI GCAATG 2 cut(s) 272, 708
Bse8I GATNNNNATC 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 407, 654
BseGI GGATG 4 cut(s) 226, 572, 605, 664
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 2 cut(s) 272, 708
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 355
BshTI ACCGGT 1 cut(s) 438
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 3 cut(s) 456, 614, 644
Bso31I GGTCTC 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 135, 307, 403, 694
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 3 cut(s) 315, 398, 411
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 272, 708
BsrFI RCCGGY 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 407, 654
BssMI GATC 4 cut(s) 135, 307, 403, 694
BssT1I CCWWGG 2 cut(s) 407, 654
Bst4CI ACNGT 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 334
BstF5I GGATG 4 cut(s) 226, 572, 605, 664
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 4 cut(s) 138, 310, 406, 697
BstMAI GTCTC 3 cut(s) 456, 614, 644
BstMBI GATC 4 cut(s) 135, 307, 403, 694
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 307, 403
BstYI RGATCY 2 cut(s) 307, 403
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 4 cut(s) 226, 572, 605, 664
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 360, 427
CfoI GCGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 724
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 153, 313
CspAI ACCGGT 1 cut(s) 438
CviAII CATG 3 cut(s) 11, 133, 655
CviJI RGCY 3 cut(s) 167, 368, 547
CviKI_1 RGCY 3 cut(s) 167, 368, 547
CviQI GTAC 2 cut(s) 153, 313
DpnI GATC 4 cut(s) 137, 309, 405, 696
DpnII GATC 4 cut(s) 135, 307, 403, 694
DrdI GACNNNNNNGTC 1 cut(s) 628
DseDI GACNNNNNNGTC 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 407, 654
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 724
EcoT14I CCWWGG 2 cut(s) 407, 654
ErhI CCWWGG 2 cut(s) 407, 654
FaeI CATG 3 cut(s) 14, 136, 658
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 3 cut(s) 10, 132, 654
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 2 cut(s) 369, 548
FokI GGATG 4 cut(s) 233, 579, 612, 671
Fsp4HI GCNGC 2 cut(s) 369, 548
FspBI CTAG 2 cut(s) 158, 585
GlaI GCGC 1 cut(s) 707
GluI GCNGC 2 cut(s) 369, 548
HapII CCGG 1 cut(s) 439
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 708
Hin1II CATG 3 cut(s) 14, 136, 658
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HinfI GANTC 3 cut(s) 326, 464, 629
HpaII CCGG 1 cut(s) 439
HphI GGTGA 3 cut(s) 56, 407, 704
Hpy188I TCNGA 2 cut(s) 216, 259
Hpy188III TCNNGA 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 211, 347
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 6 cut(s) 121, 229, 377, 420, 447, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 3 cut(s) 14, 136, 658
HspAI GCGC 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 4 cut(s) 135, 307, 403, 694
LpnPI CCDG 4 cut(s) 59, 258, 452, 536
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 2 cut(s) 158, 585
MaeII ACGT 1 cut(s) 334
MalI GATC 4 cut(s) 137, 309, 405, 696
MboI GATC 4 cut(s) 135, 307, 403, 694
MboII GAAGA 5 cut(s) 59, 62, 140, 173, 253
MflI RGATCY 2 cut(s) 307, 403
MluCI AATT 4 cut(s) 58, 92, 342, 532
MlyI GAGTC 3 cut(s) 320, 458, 638
MmeI TCCRAC 3 cut(s) 271, 303, 544
MnlI CCTC 5 cut(s) 74, 255, 340, 424, 590
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 587, 637
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 135, 307, 403, 694
NlaIII CATG 3 cut(s) 14, 136, 658
NlaIV GGNNCC 1 cut(s) 405
OliI CACNNNNGTG 1 cut(s) 587
PflFI GACNNNGTC 1 cut(s) 722
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 2 cut(s) 370, 549
PleI GAGTC 3 cut(s) 320, 458, 637
PpsI GAGTC 3 cut(s) 320, 458, 637
Ppu21I YACGTR 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 724
PsiI TTATAA 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 724
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 724
PspPPI RGGWCCY 1 cut(s) 724
PsuI RGATCY 2 cut(s) 307, 403
PsyI GACNNNGTC 1 cut(s) 722
RsaI GTAC 2 cut(s) 154, 314
RsaNI GTAC 2 cut(s) 153, 313
RseI CAYNNNNRTG 2 cut(s) 587, 637
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 369, 548
Sau3AI GATC 4 cut(s) 135, 307, 403, 694
Sau96I GGNCC 1 cut(s) 724
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 320, 458, 638
SetI ASST 8 cut(s) 169, 337, 370, 397, 413, 453, 582, 726
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 2 cut(s) 587, 637
SpeI ACTAGT 1 cut(s) 584
Sse9I AATT 4 cut(s) 58, 92, 342, 532
SsiI CCGC 1 cut(s) 548
SspMI CTAG 2 cut(s) 158, 585
StyI CCWWGG 2 cut(s) 407, 654
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 513
TasI AATT 4 cut(s) 58, 92, 342, 532
TatI WGTACW 2 cut(s) 152, 312
TauI GCSGC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 367, 427
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 367, 427
Tth111I GACNNNGTC 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 724
XagI CCTNNNNNAGG 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 157
XspI CTAG 2 cut(s) 158, 585
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.