Rh2BG646600

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
86597322 .. 86597993
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG646600.1

Sequence Viewer

Length: 672 bp
ATGTTTGGAGGCAAATATGCCCACCTCGTTACTGACCTTGAACAGAATAATTTTTTGATGCTGGCGGATCAGTTTAAAAGACAAGACTTTATAAGACGTGTACATGAGTTTTTGAGGCTCTATTCTGGTAAGAAGGTATACACTTTCAAAGTGGCATTCTACTATTTGAATGGAGAAGATGCTGGCCACCTAGATGAATGGATTTGTTTTGCAATTGAAAACGGAGCCCAAGTGCTTAATCTTCAATTATATTACAGCTTCTGGTGTTATTATGATTTTCCTCACCAGTTGCTACTTTCAAACTCAAGTCTAAAGCATTTATCATTGCAGAGATGTGTTCTGAAACCTCCACCTGATCATTTTGACAAGTTCAATCAGCTAGCAACTCTTGATCTACGCGATGTCATTTTAGATGAAAACTATACAGCATGTCTCTTCTCTAATTGTTTGTTACTCGAAAGATTGACCTTGTGGCATTGCGATGTGGGCTCATTTCTGATCATTACTGGTCATCCTCGTCTGACTGATTTGAAAGTGCTGTGGTGTATTAAGTTAGAAAAACTAGAGATACAAGCAGCTAATCTTGTCTCCTTAGAACACAAACGGCTATATCATGACTTTTTGCATCAAAACTCCACGGTTAGCAAGACTTCTTCTGCGGGACAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

26.12

Weight (kDa)

6.58

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 38 - 203 8.8e-25 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 64 - 202 1.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 399
AciI CCGC 2 cut(s) 65, 659
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 184
AfaI GTAC 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 8 cut(s) 41, 148, 169, 218, 245, 300, 373, 532
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 3 cut(s) 258, 379, 578
AluI AGCT 3 cut(s) 258, 379, 578
Alw26I GTCTC 2 cut(s) 437, 592
AlwI GGATC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 261
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 186
BanII GRGCYC 2 cut(s) 229, 491
BbvI GCAGC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 620
BclI TGATCA 2 cut(s) 355, 498
BcoDI GTCTC 2 cut(s) 437, 592
BfaI CTAG 3 cut(s) 191, 380, 563
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 3 cut(s) 48, 169, 634
BmtI GCTAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 636
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bse1I ACTGG 2 cut(s) 286, 511
Bse3DI GCAATG 2 cut(s) 323, 475
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 323, 475
BseNI ACTGG 2 cut(s) 286, 511
BseXI GCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 437, 592
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 229, 491
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 4 cut(s) 67, 355, 391, 498
BspACI CCGC 2 cut(s) 65, 659
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 323, 475
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 2 cut(s) 286, 511
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 4 cut(s) 67, 355, 391, 498
BssNAI GTATAC 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 640, 666
Bst6I CTCTTC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 63, 184, 381
BstDEI CTNAG 1 cut(s) 592
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 4 cut(s) 70, 358, 394, 501
BstMAI GTCTC 2 cut(s) 437, 592
BstMBI GATC 4 cut(s) 67, 355, 391, 498
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 432
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 587
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 2 cut(s) 414, 495
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 671
Cac8I GCNNGC 3 cut(s) 63, 184, 381
CaiI CAGNNNCTG 1 cut(s) 261
CciI TCATGA 1 cut(s) 613
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 104, 429, 614
CviJI RGCY 8 cut(s) 118, 186, 227, 258, 379, 489, 578, 607
CviKI_1 RGCY 8 cut(s) 118, 186, 227, 258, 379, 489, 578, 607
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 592
DpnI GATC 4 cut(s) 69, 357, 393, 500
DpnII GATC 4 cut(s) 67, 355, 391, 498
DraI TTTAAA 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 229, 491
EcoT38I GRGCYC 2 cut(s) 229, 491
FaeI CATG 3 cut(s) 107, 432, 617
FatI CATG 3 cut(s) 103, 428, 613
FauI CCCGC 1 cut(s) 652
FbaI TGATCA 2 cut(s) 355, 498
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 1 cut(s) 498
FriOI GRGCYC 2 cut(s) 229, 491
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 3 cut(s) 191, 380, 563
GluI GCNGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 3 cut(s) 107, 432, 617
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 101, 139
Hpy188I TCNGA 3 cut(s) 342, 498, 522
Hpy188III TCNNGA 2 cut(s) 389, 614
Hpy8I GTNNAC 2 cut(s) 101, 139
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 640, 666
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 212, 328, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 592
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 107, 432, 617
Ksp22I TGATCA 2 cut(s) 355, 498
Kzo9I GATC 4 cut(s) 67, 355, 391, 498
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 7 cut(s) 47, 111, 168, 247, 299, 366, 492
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 3 cut(s) 48, 169, 634
MaeI CTAG 3 cut(s) 191, 380, 563
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 28, 450
MalI GATC 4 cut(s) 69, 357, 393, 500
MboI GATC 4 cut(s) 67, 355, 391, 498
MboII GAAGA 4 cut(s) 188, 233, 427, 645
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 229, 491
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 4 cut(s) 49, 213, 245, 442
MluNI TGGCCA 1 cut(s) 186
MnlI CCTC 5 cut(s) 35, 108, 291, 357, 525
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 3 cut(s) 75, 237, 549
MslI CAYNNNNRTG 2 cut(s) 192, 480
Msp20I TGGCCA 1 cut(s) 186
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 155
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeII GATC 4 cut(s) 67, 355, 391, 498
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 3 cut(s) 107, 432, 617
NlaIV GGNNCC 1 cut(s) 226
NspI RCATGY 1 cut(s) 432
PagI TCATGA 1 cut(s) 613
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 577
PsiI TTATAA 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 261
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 192, 480
SaqAI TTAA 3 cut(s) 75, 237, 549
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 4 cut(s) 67, 355, 391, 498
SduI GDGCHC 2 cut(s) 229, 491
SfaNI GCATC 3 cut(s) 48, 169, 634
SmiMI CAYNNNNRTG 2 cut(s) 192, 480
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 4 cut(s) 49, 213, 245, 442
SsiI CCGC 2 cut(s) 65, 659
SspMI CTAG 3 cut(s) 191, 380, 563
TaaI ACNGT 2 cut(s) 640, 666
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 49, 213, 245, 442
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 3 cut(s) 75, 237, 549
Tru9I TTAA 3 cut(s) 75, 237, 549
TscAI CASTG 1 cut(s) 671
TseI GCWGC 1 cut(s) 575
TspDTI ATGAA 2 cut(s) 210, 429
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 671
XceI RCATGY 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 3 cut(s) 191, 380, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.