Rmu_sc0002034.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002034.1
OG0000084
Physical Location & Seq
Reverse (-)
24214 .. 25551
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002034.1_g000008.1.cds

Sequence Viewer

Length: 615 bp
atggaatccatagtctcgttgctacctctaaaagacgcagtgaatactatcctggcttcccctcctcagtggaagcacctttctcatccaatactaaccaggcgcaatctagagttgaactatttgaacttttacgggagcaaatacccgacgtatgaggagacacaagactttgcaagacgtcaactcaacttggatattatcctattccgaatccttgtgcaagaggaggacgattttgatgttaaatattgcgtgctggatcttctcaaggctgcaccccttttggaagagcttataatactggtagttggaggacatttgtttgagactaatccacaagagatgaggaatcattctggattcacaaatgatcatttgaaaatggttaagatgaagggatttttgggtcattggtacgagacacagctggccattggtatcctagagaatgcaccaaagctcaagatgctagtaattgatccttttgatccatttgaaaaacactattcggatgatggaaagtaccccgagaattattcagaacaacatatggccgttgttgaagaaaaactcaagggagtaaagaccgatgctcaaatcctatttctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

204

Amino Acids

23.7

Weight (kDa)

5.35

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AatII GACGTC 1 cut(s) 184
AclWI GGATC 3 cut(s) 270, 476, 485
AcoI YGGCCR 2 cut(s) 432, 555
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 419, 527
AgsI TTSAA 5 cut(s) 118, 127, 382, 500, 566
AjnI CCWGG 2 cut(s) 51, 98
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 3 cut(s) 295, 430, 463
AluI AGCT 3 cut(s) 295, 430, 463
Alw26I GTCTC 4 cut(s) 19, 155, 323, 416
AlwI GGATC 3 cut(s) 270, 476, 485
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 432, 555
ApeKI GCWGC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 530
BalI TGGCCA 1 cut(s) 434
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 542
BciT130I CCWGG 2 cut(s) 53, 100
BciVI GTATCC 1 cut(s) 452
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 4 cut(s) 19, 155, 323, 416
BfaI CTAG 3 cut(s) 110, 446, 473
BfuI GTATCC 1 cut(s) 452
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 53, 100
BmeT110I CYCGRG 1 cut(s) 530
BmrFI CCNGG 2 cut(s) 53, 100
BmsI GCATC 2 cut(s) 459, 583
BpuEI CTTGAG 3 cut(s) 254, 449, 560
BsaHI GRCGYC 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 309
BseBI CCWGG 2 cut(s) 53, 100
BseGI GGATG 2 cut(s) 85, 520
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 3 cut(s) 54, 173, 242
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 434, 557
BsiHKCI CYCGRG 1 cut(s) 530
BsmAI GTCTC 4 cut(s) 19, 155, 323, 416
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 434, 557
BsoBI CYCGRG 1 cut(s) 530
Bsp143I GATC 4 cut(s) 262, 373, 481, 490
BspANI GGCC 2 cut(s) 434, 557
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 3 cut(s) 270, 476, 485
BspQI GCTCTTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 309
BssMI GATC 4 cut(s) 262, 373, 481, 490
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 53, 100
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 257, 432
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 85, 520
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 4 cut(s) 265, 376, 484, 493
BstMAI GTCTC 4 cut(s) 19, 155, 323, 416
BstMBI GATC 4 cut(s) 262, 373, 481, 490
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 2 cut(s) 53, 100
BstSCI CCNGG 2 cut(s) 51, 98
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 2 cut(s) 434, 557
BtsCI GGATG 2 cut(s) 85, 520
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 74
Cac8I GCNNGC 2 cut(s) 257, 432
CfoI GCGC 1 cut(s) 105
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 418, 526
CviJI RGCY 7 cut(s) 56, 275, 295, 430, 434, 463, 557
CviKI_1 RGCY 7 cut(s) 56, 275, 295, 430, 434, 463, 557
CviQI GTAC 2 cut(s) 418, 526
DdeI CTNAG 1 cut(s) 66
DpnI GATC 4 cut(s) 264, 375, 483, 492
DpnII GATC 4 cut(s) 262, 373, 481, 490
EaeI YGGCCR 2 cut(s) 432, 555
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 51, 98
FaiI YATR 6 cut(s) 11, 156, 299, 552, 554, 613
FauNDI CATATG 1 cut(s) 552
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 72, 527
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 3 cut(s) 110, 446, 473
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 434, 557
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 4 cut(s) 5, 213, 352, 363
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 212, 514, 544
Hpy188III TCNNGA 3 cut(s) 110, 360, 466
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 152, 181
HpyCH4V TGCA 4 cut(s) 176, 223, 278, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 152, 181
Hsp92I GRCGYC 1 cut(s) 181
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 262, 373, 481, 490
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 8 cut(s) 38, 65, 85, 112, 245, 290, 345, 416
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 459, 583
MaeI CTAG 3 cut(s) 110, 446, 473
MaeII ACGT 2 cut(s) 152, 181
MalI GATC 4 cut(s) 264, 375, 483, 492
MboI GATC 4 cut(s) 262, 373, 481, 490
MboII GAAGA 3 cut(s) 257, 302, 578
MflI RGATCY 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 2 cut(s) 477, 535
MluNI TGGCCA 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 8 cut(s) 36, 72, 75, 151, 220, 223, 308, 342
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 2 cut(s) 246, 390
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 430
MspR9I CCNGG 2 cut(s) 53, 100
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 53, 100
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeI CATATG 1 cut(s) 552
NdeII GATC 4 cut(s) 262, 373, 481, 490
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 5, 213, 352, 363
PkrI GCNGC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 51, 98
PspGI CCWGG 2 cut(s) 51, 98
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 419, 527
RsaNI GTAC 2 cut(s) 418, 526
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 246, 390
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 4 cut(s) 262, 373, 481, 490
ScrFI CCNGG 2 cut(s) 53, 100
SetI ASST 7 cut(s) 28, 81, 155, 184, 297, 432, 465
SfaNI GCATC 2 cut(s) 459, 583
SmlI CTYRAG 3 cut(s) 269, 464, 575
SmoI CTYRAG 3 cut(s) 269, 464, 575
Sse9I AATT 2 cut(s) 477, 535
SspI AATATT 1 cut(s) 251
SspMI CTAG 3 cut(s) 110, 446, 473
StyD4I CCNGG 2 cut(s) 51, 98
TaiI ACGT 2 cut(s) 155, 184
TaqII GACCGA 1 cut(s) 605
TasI AATT 2 cut(s) 477, 535
TfiI GAWTC 4 cut(s) 5, 213, 352, 363
Tru1I TTAA 2 cut(s) 246, 390
Tru9I TTAA 2 cut(s) 246, 390
TscAI CASTG 2 cut(s) 45, 74
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 2 cut(s) 45, 74
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 3 cut(s) 110, 446, 473
ZraI GACGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.