Prupe.7G249000_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000084
Physical Location & Seq
Forward (+)
21113303 .. 21116434
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G249000.2

Sequence Viewer

Length: 933 bp
ATGAGGAGAAAGTGCAAGGATCACATCAGTAAATTGCCAGATGATGTTCTTCATACCATTGTCTCATTATTGAGTATGAGGGATGCTGTACGCACGAGCGTATTATCACATAGGTGGAAGAACATGTATGCATACATGTCAAATCTCGAGTTCAATTGGCATGACATAATCTCCACACCAGCTGATTCAACTCCTGGAGCGGTTTGCAACAGCAAAGTGCGCTATTTTCTAGCAAGACTAGAAAGATTCTTAGCATGTCATTTGGGCACGAAGGTTGTCTCCTTCAAGGTTTCATGTTGTTTTGGAAATATGTACGGTCTTCATATCAATGACTGGATTAGTTTTGCCATTAGAAAGGGTGTTGAAAATCTTGATCTTGCCTTTACTTGTGACAAACCAGCTGAGCGCATCGATTGGAGAATCATTGACTATTATCATTTTCCTACTCAGCTCCTTTTGCATGGTGAAGAATCCAAATTAAGGCATCTTTCCTTGCGCTCATGCACACTTCAGTCAGATTTTTTTGATCGATTTAGCACCTTATCAACTCTTGTGTTGTGTGATGTAAATCTCGCTGGACATGTTGAGCCGCATATGTTTTCTTCTTGTTCAAACCTTGAGTGTTTAACATTGCAATGGTGTTTTGGATTAGAAAGATTGTGCATTGGTGATTCCCTTCATCGTTTGAAGGTGCTGGTGGTGAGCCTCTGTGAAGGGTTAAAGGGGATTGAACTCAGTGCCACCAATCTTACCAGTTTCCATTATAAGGGTGATGACATAGAACTCTCTTTTGAAAGGGTTCCCAATCTGGGGGAACTATATGTTATGATGAAGGACACTGATGTGGTTTCTACTTTTGCTGAGCTTGAGAAAGAACTTCCTCATGTCAAGAGTATGACAGTTGCCAAAAGTCGTGCCCGTTATAATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

311

Amino Acids

35.6

Weight (kDa)

7.58

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 765, 924
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 2 cut(s) 200, 590
AclWI GGATC 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 2 cut(s) 90, 314
AfiI CCNNNNNNNGG 4 cut(s) 480, 766, 809, 810
AflIII ACRYGT 3 cut(s) 123, 135, 580
AgsI TTSAA 8 cut(s) 154, 189, 286, 365, 612, 688, 731, 794
AjnI CCWGG 1 cut(s) 193
AleI CACNNNNGTG 2 cut(s) 112, 842
AluBI AGCT 4 cut(s) 182, 401, 451, 865
AluI AGCT 4 cut(s) 182, 401, 451, 865
Alw26I GTCTC 2 cut(s) 67, 283
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 3 cut(s) 222, 408, 498
AsuHPI GGTGA 4 cut(s) 476, 680, 712, 782
AvaI CYCGRG 1 cut(s) 146
BaeGI GKGCMC 2 cut(s) 269, 919
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 67, 283
BfaI CTAG 2 cut(s) 230, 239
BisI GCNGC 1 cut(s) 590
BlpI GCTNAGC 2 cut(s) 402, 861
BlsI GCNGC 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 801
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 3 cut(s) 73, 417, 493
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 216
Bpu1102I GCTNAGC 2 cut(s) 402, 861
BpuEI CTTGAG 2 cut(s) 638, 887
Bsa29I ATCGAT 2 cut(s) 411, 529
BsaBI GATNNNNATC 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 766, 809, 810
Bse1I ACTGG 2 cut(s) 338, 753
Bse3DI GCAATG 2 cut(s) 629, 641
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 2 cut(s) 411, 529
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 4 cut(s) 480, 766, 809, 810
BseMI GCAATG 2 cut(s) 629, 641
BseMII CTCAG 4 cut(s) 393, 461, 748, 852
BseNI ACTGG 2 cut(s) 338, 753
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 269, 919
BshVI ATCGAT 2 cut(s) 411, 529
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 480, 766, 809, 810
BsmAI GTCTC 2 cut(s) 67, 283
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 269, 919
Bsp143I GATC 3 cut(s) 19, 373, 526
Bsp1720I GCTNAGC 2 cut(s) 402, 861
BspACI CCGC 2 cut(s) 200, 590
BspCNI CTCAG 4 cut(s) 394, 460, 747, 853
BspDI ATCGAT 2 cut(s) 411, 529
BspLI GGNNCC 1 cut(s) 801
BspPI GGATC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 629, 641
BsrI ACTGG 2 cut(s) 338, 753
BssMI GATC 3 cut(s) 19, 373, 526
BssSI CACGAG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 317, 901
BstDEI CTNAG 5 cut(s) 250, 402, 447, 734, 861
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 3 cut(s) 222, 408, 498
BstKTI GATC 3 cut(s) 22, 376, 529
BstMAI GTCTC 2 cut(s) 67, 283
BstMBI GATC 3 cut(s) 19, 373, 526
BstMWI GCNNNNNNNGC 2 cut(s) 219, 457
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 4 cut(s) 127, 139, 258, 584
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 2 cut(s) 269, 919
BstV2I GAAGAC 1 cut(s) 311
Bsu15I ATCGAT 2 cut(s) 411, 529
BsuTUI ATCGAT 2 cut(s) 411, 529
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 742, 837
CfoI GCGC 3 cut(s) 222, 408, 498
ClaI ATCGAT 2 cut(s) 411, 529
Csp6I GTAC 2 cut(s) 89, 313
CviAII CATG 9 cut(s) 124, 136, 161, 255, 294, 461, 501, 581, 884
CviJI RGCY 6 cut(s) 182, 401, 451, 589, 705, 865
CviKI_1 RGCY 6 cut(s) 182, 401, 451, 589, 705, 865
CviQI GTAC 2 cut(s) 89, 313
DdeI CTNAG 5 cut(s) 250, 402, 447, 734, 861
DpnI GATC 3 cut(s) 21, 375, 528
DpnII GATC 3 cut(s) 19, 373, 526
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 133
FaeI CATG 9 cut(s) 127, 139, 164, 258, 297, 464, 504, 584, 887
FatI CATG 9 cut(s) 123, 135, 160, 254, 293, 460, 500, 580, 883
FauNDI CATATG 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 590
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 590
FspBI CTAG 2 cut(s) 230, 239
GlaI GCGC 3 cut(s) 221, 407, 497
GluI GCNGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 216
HhaI GCGC 3 cut(s) 222, 408, 498
Hin1II CATG 9 cut(s) 127, 139, 164, 258, 297, 464, 504, 584, 887
Hin6I GCGC 3 cut(s) 220, 406, 496
HinP1I GCGC 3 cut(s) 220, 406, 496
HinfI GANTC 5 cut(s) 185, 246, 420, 470, 671
HphI GGTGA 4 cut(s) 476, 680, 712, 782
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 3 cut(s) 146, 371, 889
HpyAV CCTTC 6 cut(s) 265, 292, 682, 686, 707, 826
HpyCH4III ACNGT 2 cut(s) 317, 901
HpyCH4V TGCA 7 cut(s) 15, 131, 207, 460, 504, 634, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 457
HpyF3I CTNAG 5 cut(s) 250, 402, 447, 734, 861
Hsp92II CATG 9 cut(s) 127, 139, 164, 258, 297, 464, 504, 584, 887
HspAI GCGC 3 cut(s) 220, 406, 496
Kzo9I GATC 3 cut(s) 19, 373, 526
LmnI GCTCC 2 cut(s) 197, 456
LweI GCATC 3 cut(s) 73, 417, 493
MaeI CTAG 2 cut(s) 230, 239
MaeIII GTNAC 1 cut(s) 389
MalI GATC 3 cut(s) 21, 375, 528
MbiI CCGCTC 1 cut(s) 200
MboI GATC 3 cut(s) 19, 373, 526
MboII GAAGA 5 cut(s) 41, 130, 311, 479, 594
MfeI CAATTG 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 269, 919
MluCI AATT 3 cut(s) 32, 154, 476
MnlI CCTC 3 cut(s) 72, 716, 891
Mph1103I ATGCAT 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 3 cut(s) 479, 626, 719
MslI CAYNNNNRTG 4 cut(s) 112, 327, 634, 842
MspA1I CMGCKG 2 cut(s) 182, 401
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 219, 457
NdeI CATATG 1 cut(s) 594
NdeII GATC 3 cut(s) 19, 373, 526
NlaIII CATG 9 cut(s) 127, 139, 164, 258, 297, 464, 504, 584, 887
NlaIV GGNNCC 1 cut(s) 801
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 4 cut(s) 127, 139, 258, 584
OliI CACNNNNGTG 2 cut(s) 112, 842
PaeR7I CTCGAG 1 cut(s) 146
PciI ACATGT 3 cut(s) 123, 135, 580
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 5 cut(s) 185, 246, 420, 470, 671
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 1 cut(s) 591
PscI ACATGT 3 cut(s) 123, 135, 580
PsiI TTATAA 2 cut(s) 765, 924
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 801
PvuII CAGCTG 2 cut(s) 182, 401
RsaI GTAC 2 cut(s) 90, 314
RsaNI GTAC 2 cut(s) 89, 313
RseI CAYNNNNRTG 4 cut(s) 112, 327, 634, 842
SaqAI TTAA 3 cut(s) 479, 626, 719
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 3 cut(s) 19, 373, 526
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 2 cut(s) 269, 919
SfaNI GCATC 3 cut(s) 73, 417, 493
Sfr274I CTCGAG 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 4 cut(s) 112, 327, 634, 842
SmlI CTYRAG 3 cut(s) 146, 617, 866
SmoI CTYRAG 3 cut(s) 146, 617, 866
Sse9I AATT 3 cut(s) 32, 154, 476
SsiI CCGC 2 cut(s) 200, 590
SspMI CTAG 2 cut(s) 230, 239
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 317, 901
TaqI TCGA 3 cut(s) 147, 411, 529
TasI AATT 3 cut(s) 32, 154, 476
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 5 cut(s) 185, 246, 420, 470, 671
Tru1I TTAA 3 cut(s) 479, 626, 719
Tru9I TTAA 3 cut(s) 479, 626, 719
TscAI CASTG 2 cut(s) 742, 844
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 5 cut(s) 41, 282, 311, 668, 845
TspRI CASTG 2 cut(s) 742, 844
XceI RCATGY 4 cut(s) 127, 139, 258, 584
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 2 cut(s) 230, 239
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.