RLG00000021756

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000084
Physical Location & Seq
Reverse (-)
78004987 .. 78006639
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021756

Sequence Viewer

Length: 1653 bp
ATGGACCACAACGGTATAATAGCTACTGTTGACGGCCAGAGTAAGGATTGGATTAACGGGCTGCCGGATTGCATTCTGTCACACATAGTTTCATTGCTACGAATAAAAGATGCTGTGGAAACTAGTATGGTGTCACGTCAGTGGAGGTACCTCTGGAAGACGAGTCCCAATCTGGAATTTGACATTCCAAACATTTTCGGAAGCAAGTATGCCAGGCTCATTGAGAAACATGAAGAAAAGGATAGACTTCCTTTTTTGGTTGATAGATTCGACAGACAATGCTTTGTAAGACGTGTGAATGAACTTTTGGAGCTCTACTCTGGTAACAAGGTAGAGTCTCTCAGAGTGGCATTCTTTTTTGATGTCGAATCTACGGCCATACTTGATAAGTGGATTCGTTTTGCAATTGCAAAGGGAGCTAAAGTTCTCGACCTTCACTTATTAAATAGCACACATTGGGACTATGCAGAATTTTACGTTTTTCCCCACTGGATCCTTTCAGAGTTGAATAATGCATCGGCCCTAAAGCATTTGTCGCTGCACAGATGTGTTCTAAAACCGCCTACTGATTTCAACAGATTGGCTCAGCTAACAACTCTTTGTCTAAACAAGGTCTTCGTTGATCCAGGATTTTTGGAACATCTGTTCTCGATTTGTGTGCTCCTTGAAGGCTTGACGTTGATAAAATGCAGGGTGCGACTCTCAAATCTGATTATTGGTCCATCGCTCCACCTCAGGGATCTGAAGGTGCTTGAGTGCGACGAATTAGAAAAAATAGAGATTGACGCAGTAAATCTTTCCTCCTTTGAATATGATGGAATTATTTTTGACATTTCTTGCATGAGAACTCCACATCTAGTAAGATTCTTTTTTAGGGGATTCAGTGGTATCTATGGATTACCTTATGCGTTCACCCTACTCGCCTTGTGTCCTTCCCTTGAGACTCTTCATCTGCAGTCGTTTACTGAACTGGAAAATATACCAGAAACAGTTCCAACATTTTCAAACCTCAAGCATGTGAGCTTGGATCTCTTTAATTCAGATTTTGACCTTGGGGGTGTAGTGAGTTTTCTCAAGGCTGCACCTCTTTTGGAAGAACTCGTACTAACGACACGAGCTTATAGCTATCAAGGAGAGATGAGGAATCTTTCCGGATTCTCACATAATCATTTAAGAAAAGTGAAAATGCAAGGGTTCCAAGGCAAGCGGTTGGAGATAGAGTTGGCCATTTGCATTCTTAAATTTTCAACAAAGCTTGAGGTAATGGTGATAGATACACTAGGAAAACACTACCACGGCTGTGGAAGGTGGACCAATTACGATTGTTCTTATTATCAGGAGGGGAATGAGGACGAGAATGAGGATGTGGACTCTGAGGAAGGGAGAGAGGATGAGAGCATGGACGAAGAAGGGACTCAGCATGAAAACGAGGAGTACAATGAGGTTGAGGAAGGGGGTGAGCATGAGAACGAGAACAAGGATGAGAATGAGGATAACGATGAAGGAGTGGAAGCTCGGGAATTAAGCGAGGATGAAGACGAGGACAAAGATGAAGACAAGCCTTGGATTTTCCATTGGGAAAGAAGAGGTAGAGCAGTTGTCCAACAAAAGCTGAAAGAAGTAAAGACTGATGCTCAAGTCATCATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

551

Amino Acids

63.64

Weight (kDa)

4.91

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 57 7.7e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 106 - 446 4.3e-54 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 128 - 268 2.7e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 1151
AciI CCGC 2 cut(s) 560, 1207
AclWI GGATC 5 cut(s) 487, 500, 617, 747, 1035
AcoI YGGCCR 3 cut(s) 34, 375, 1224
AcsI RAATTY 3 cut(s) 176, 470, 1241
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 3 cut(s) 149, 1104, 1436
AfiI CCNNNNNNNGG 2 cut(s) 43, 736
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 6 cut(s) 508, 574, 668, 809, 1005, 1248
AhlI ACTAGT 1 cut(s) 122
AjiI CACGTC 2 cut(s) 137, 293
AjnI CCWGG 2 cut(s) 212, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AleI CACNNNNGTG 3 cut(s) 139, 546, 1299
AloI GAACNNNNNNTCC 4 cut(s) 408, 440, 629, 661
Alw21I GWGCWC 2 cut(s) 315, 663
Alw26I GTCTC 2 cut(s) 342, 935
AlwI GGATC 5 cut(s) 487, 500, 617, 747, 1035
Ama87I CYCGRG 1 cut(s) 1515
Aor13HI TCCGGA 1 cut(s) 1151
AoxI GGCC 4 cut(s) 34, 375, 519, 1224
ApeKI GCWGC 3 cut(s) 61, 538, 1079
ApoI RAATTY 3 cut(s) 176, 470, 1241
Asp700I GAANNNNTTC 1 cut(s) 990
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 4 cut(s) 4, 520, 719, 1311
AsuHPI GGTGA 3 cut(s) 904, 1279, 1469
AvaI CYCGRG 1 cut(s) 1515
AvaII GGWCC 3 cut(s) 4, 719, 1311
AxyI CCTNAGG 1 cut(s) 734
BalI TGGCCA 1 cut(s) 1226
BamHI GGATCC 1 cut(s) 492
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 1086, 1118
BauI CACGAG 1 cut(s) 1113
BbsI GAAGAC 4 cut(s) 164, 607, 1542, 1560
Bbv12I GWGCWC 2 cut(s) 315, 663
BbvI GCAGC 3 cut(s) 48, 525, 1066
BccI CCATC 2 cut(s) 730, 809
BceAI ACGGC 3 cut(s) 49, 390, 1312
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 2 cut(s) 214, 627
BcoDI GTCTC 2 cut(s) 342, 935
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 3 cut(s) 123, 857, 1280
BfmI CTRYAG 1 cut(s) 953
BisI GCNGC 3 cut(s) 62, 539, 1080
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 3 cut(s) 63, 540, 1081
Bme1390I CCNGG 2 cut(s) 214, 627
Bme18I GGWCC 3 cut(s) 4, 719, 1311
BmeT110I CYCGRG 1 cut(s) 1515
BmgBI CACGTC 2 cut(s) 137, 293
BmgT120I GGNCC 4 cut(s) 4, 520, 719, 1311
BmiI GGNNCC 3 cut(s) 149, 494, 1196
BmrFI CCNGG 2 cut(s) 214, 627
BmsI GCATC 3 cut(s) 100, 524, 1621
BpiI GAAGAC 4 cut(s) 164, 607, 1542, 1560
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 6 cut(s) 773, 959, 995, 1058, 1277, 1620
BsaJI CCNNGG 4 cut(s) 1051, 1198, 1294, 1562
BsaWI WCCGGW 1 cut(s) 1151
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 1205, 1235
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 736
Bse1I ACTGG 2 cut(s) 494, 975
Bse21I CCTNAGG 1 cut(s) 734
Bse3DI GCAATG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 1151
BseBI CCWGG 2 cut(s) 214, 627
BseDI CCNNGG 4 cut(s) 1051, 1198, 1294, 1562
BseGI GGATG 5 cut(s) 1369, 1396, 1486, 1537, 1644
BseLI CCNNNNNNNGG 2 cut(s) 43, 736
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 5 cut(s) 355, 599, 748, 1365, 1430
BseNI ACTGG 2 cut(s) 494, 975
BseRI GAGGAG 1 cut(s) 1445
BseXI GCAGC 3 cut(s) 48, 525, 1066
BsgI GTGCAG 2 cut(s) 524, 1065
BshFI GGCC 4 cut(s) 36, 377, 521, 1226
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 315, 663
BsiHKCI CYCGRG 1 cut(s) 1515
BsiSI CCGG 2 cut(s) 65, 1152
BslFI GGGAC 3 cut(s) 150, 473, 1426
BslI CCNNNNNNNGG 2 cut(s) 43, 736
BsmAI GTCTC 2 cut(s) 342, 935
BsmFI GGGAC 3 cut(s) 150, 473, 1426
BsmI GAATGC 3 cut(s) 72, 350, 1233
BsnI GGCC 4 cut(s) 36, 377, 521, 1226
BsoBI CYCGRG 1 cut(s) 1515
Bsp1286I GDGCHC 2 cut(s) 315, 663
Bsp13I TCCGGA 1 cut(s) 1151
Bsp143I GATC 4 cut(s) 492, 622, 739, 1027
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 2 cut(s) 560, 1207
BspANI GGCC 4 cut(s) 36, 377, 521, 1226
BspCNI CTCAG 5 cut(s) 354, 598, 747, 1366, 1429
BspEI TCCGGA 1 cut(s) 1151
BspLI GGNNCC 3 cut(s) 149, 494, 1196
BspMAI CTGCAG 1 cut(s) 957
BspPI GGATC 5 cut(s) 487, 500, 617, 747, 1035
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 2 cut(s) 494, 975
BssECI CCNNGG 4 cut(s) 1051, 1198, 1294, 1562
BssMI GATC 4 cut(s) 492, 622, 739, 1027
BssSI CACGAG 1 cut(s) 1113
BssT1I CCWWGG 3 cut(s) 1051, 1198, 1562
Bst2BI CACGAG 1 cut(s) 1113
Bst2UI CCWGG 2 cut(s) 214, 627
Bst4CI ACNGT 3 cut(s) 14, 28, 991
Bst6I CTCTTC 2 cut(s) 951, 1579
BstC8I GCNNGC 1 cut(s) 1205
BstDEI CTNAG 5 cut(s) 341, 585, 734, 1374, 1416
BstDSI CCRYGG 1 cut(s) 1294
BstF5I GGATG 5 cut(s) 1369, 1396, 1486, 1537, 1644
BstKTI GATC 4 cut(s) 495, 625, 742, 1030
BstMAI GTCTC 2 cut(s) 342, 935
BstMBI GATC 4 cut(s) 492, 622, 739, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 416, 535
BstNI CCWGG 2 cut(s) 214, 627
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 2 cut(s) 212, 625
BstSFI CTRYAG 1 cut(s) 953
BstV1I GCAGC 3 cut(s) 48, 525, 1066
BstV2I GAAGAC 4 cut(s) 164, 607, 1542, 1560
BstX2I RGATCY 3 cut(s) 492, 739, 1027
BstXI CCANNNNNNTGG 1 cut(s) 1301
BstYI RGATCY 3 cut(s) 492, 739, 1027
Bsu36I CCTNAGG 1 cut(s) 734
BsuRI GGCC 4 cut(s) 36, 377, 521, 1226
BtgI CCRYGG 1 cut(s) 1294
BtgZI GCGATG 1 cut(s) 708
BtrI CACGTC 2 cut(s) 137, 293
BtsCI GGATG 5 cut(s) 1369, 1396, 1486, 1537, 1644
BtsIMutI CAGTG 3 cut(s) 146, 487, 889
Cac8I GCNNGC 1 cut(s) 1205
Cfr13I GGNCC 4 cut(s) 4, 520, 719, 1311
CseI GACGC 1 cut(s) 794
Csp6I GTAC 3 cut(s) 148, 1103, 1435
CviAII CATG 6 cut(s) 230, 841, 1016, 1399, 1421, 1463
CviQI GTAC 3 cut(s) 148, 1103, 1435
DdeI CTNAG 5 cut(s) 341, 585, 734, 1374, 1416
DpnI GATC 4 cut(s) 494, 624, 741, 1029
DpnII GATC 4 cut(s) 492, 622, 739, 1027
EaeI YGGCCR 3 cut(s) 34, 375, 1224
Eam1104I CTCTTC 2 cut(s) 951, 1579
EarI CTCTTC 2 cut(s) 951, 1579
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 3 cut(s) 1051, 1198, 1562
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 4, 719, 1311
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 764
Eco81I CCTNAGG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 1515
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 212, 625
EcoT14I CCWWGG 3 cut(s) 1051, 1198, 1562
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 3 cut(s) 1051, 1198, 1562
FaeI CATG 6 cut(s) 233, 844, 1019, 1402, 1424, 1466
FaqI GGGAC 3 cut(s) 150, 473, 1426
FatI CATG 6 cut(s) 229, 840, 1015, 1398, 1420, 1462
Fnu4HI GCNGC 3 cut(s) 62, 539, 1080
FokI GGATG 5 cut(s) 1376, 1403, 1493, 1544, 1631
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 62, 539, 1080
FspBI CTAG 3 cut(s) 123, 857, 1280
GluI GCNGC 3 cut(s) 62, 539, 1080
HaeIII GGCC 4 cut(s) 36, 377, 521, 1226
HapII CCGG 2 cut(s) 65, 1152
HgaI GACGC 1 cut(s) 794
Hin1II CATG 6 cut(s) 233, 844, 1019, 1402, 1424, 1466
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 1253
HpaII CCGG 2 cut(s) 65, 1152
HphI GGTGA 3 cut(s) 904, 1279, 1469
Hpy166II GTNNAC 5 cut(s) 31, 912, 963, 1311, 1369
Hpy188I TCNGA 7 cut(s) 200, 344, 502, 711, 744, 1042, 1375
Hpy188III TCNNGA 7 cut(s) 154, 173, 428, 649, 1152, 1337, 1517
Hpy8I GTNNAC 5 cut(s) 31, 912, 963, 1311, 1369
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 9 cut(s) 443, 662, 739, 942, 1299, 1373, 1403, 1445, 1496
HpyCH4III ACNGT 3 cut(s) 14, 28, 991
HpyCH4IV ACGT 4 cut(s) 136, 292, 477, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 535
HpyF3I CTNAG 5 cut(s) 341, 585, 734, 1374, 1416
HpySE526I ACGT 4 cut(s) 136, 292, 477, 677
Hsp92II CATG 6 cut(s) 233, 844, 1019, 1402, 1424, 1466
Kpn2I TCCGGA 1 cut(s) 1151
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 492, 622, 739, 1027
LmnI GCTCC 4 cut(s) 310, 416, 666, 732
Lsp1109I GCAGC 3 cut(s) 48, 525, 1066
LweI GCATC 3 cut(s) 100, 524, 1621
MaeI CTAG 3 cut(s) 123, 857, 1280
MaeII ACGT 4 cut(s) 136, 292, 477, 677
MaeIII GTNAC 3 cut(s) 78, 132, 323
MalI GATC 4 cut(s) 494, 624, 741, 1029
MboI GATC 4 cut(s) 492, 622, 739, 1027
MboII GAAGA 9 cut(s) 169, 245, 607, 938, 1106, 1418, 1547, 1565, 1596
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 3 cut(s) 492, 739, 1027
MhlI GDGCHC 2 cut(s) 315, 663
MlsI TGGCCA 1 cut(s) 1226
MluCI AATT 9 cut(s) 176, 405, 470, 764, 819, 1036, 1241, 1315, 1520
MluNI TGGCCA 1 cut(s) 1226
MlyI GAGTC 6 cut(s) 172, 344, 693, 937, 1364, 1408
MmeI TCCRAC 3 cut(s) 1019, 1191, 1627
Mox20I TGGCCA 1 cut(s) 1226
Mph1103I ATGCAT 1 cut(s) 517
MroI TCCGGA 1 cut(s) 1151
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 1226
MseI TTAA 6 cut(s) 54, 443, 1035, 1172, 1239, 1523
MslI CAYNNNNRTG 3 cut(s) 139, 546, 1299
Msp20I TGGCCA 1 cut(s) 1226
MspI CCGG 2 cut(s) 65, 1152
MspR9I CCNGG 2 cut(s) 214, 627
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 3 cut(s) 72, 350, 1233
MvaI CCWGG 2 cut(s) 214, 627
MwoI GCNNNNNNNGC 2 cut(s) 416, 535
NdeII GATC 4 cut(s) 492, 622, 739, 1027
NlaIII CATG 6 cut(s) 233, 844, 1019, 1402, 1424, 1466
NlaIV GGNNCC 3 cut(s) 149, 494, 1196
NmuCI GTSAC 2 cut(s) 78, 132
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 1 cut(s) 1019
OliI CACNNNNGTG 3 cut(s) 139, 546, 1299
PctI GAATGC 3 cut(s) 72, 350, 1233
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 7 cut(s) 267, 368, 394, 864, 879, 1144, 1155
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 3 cut(s) 63, 540, 1081
PleI GAGTC 6 cut(s) 171, 343, 693, 937, 1364, 1408
PpsI GAGTC 6 cut(s) 171, 343, 693, 937, 1364, 1408
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 212, 625
PspGI CCWGG 2 cut(s) 212, 625
PspN4I GGNNCC 3 cut(s) 149, 494, 1196
PspPI GGNCC 4 cut(s) 4, 520, 719, 1311
PstI CTGCAG 1 cut(s) 957
PsuI RGATCY 3 cut(s) 492, 739, 1027
RsaI GTAC 3 cut(s) 149, 1104, 1436
RsaNI GTAC 3 cut(s) 148, 1103, 1435
RseI CAYNNNNRTG 3 cut(s) 139, 546, 1299
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 6 cut(s) 54, 443, 1035, 1172, 1239, 1523
SatI GCNGC 3 cut(s) 62, 539, 1080
Sau3AI GATC 4 cut(s) 492, 622, 739, 1027
Sau96I GGNCC 4 cut(s) 4, 520, 719, 1311
SchI GAGTC 6 cut(s) 172, 344, 693, 937, 1364, 1408
ScrFI CCNGG 2 cut(s) 214, 627
SduI GDGCHC 2 cut(s) 315, 663
SfaNI GCATC 3 cut(s) 100, 524, 1621
SfcI CTRYAG 1 cut(s) 953
SinI GGWCC 3 cut(s) 4, 719, 1311
SmiMI CAYNNNNRTG 3 cut(s) 139, 546, 1299
SmlI CTYRAG 6 cut(s) 752, 938, 1010, 1073, 1256, 1635
SmoI CTYRAG 6 cut(s) 752, 938, 1010, 1073, 1256, 1635
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 9 cut(s) 176, 405, 470, 764, 819, 1036, 1241, 1315, 1520
SsiI CCGC 2 cut(s) 560, 1207
SspMI CTAG 3 cut(s) 123, 857, 1280
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 212, 625
StyI CCWWGG 3 cut(s) 1051, 1198, 1562
TaaI ACNGT 3 cut(s) 14, 28, 991
TaiI ACGT 4 cut(s) 139, 295, 480, 680
TaqI TCGA 4 cut(s) 270, 366, 429, 650
TasI AATT 9 cut(s) 176, 405, 470, 764, 819, 1036, 1241, 1315, 1520
TatI WGTACW 1 cut(s) 1434
TfiI GAWTC 7 cut(s) 267, 368, 394, 864, 879, 1144, 1155
Tru1I TTAA 6 cut(s) 54, 443, 1035, 1172, 1239, 1523
Tru9I TTAA 6 cut(s) 54, 443, 1035, 1172, 1239, 1523
TscAI CASTG 3 cut(s) 146, 494, 889
TseFI GTSAC 2 cut(s) 78, 132
TseI GCWGC 3 cut(s) 61, 538, 1079
Tsp45I GTSAC 2 cut(s) 78, 132
TspDTI ATGAA 8 cut(s) 81, 246, 315, 938, 1437, 1515, 1548, 1566
TspRI CASTG 3 cut(s) 146, 494, 889
VpaK11BI GGWCC 3 cut(s) 4, 719, 1311
XapI RAATTY 3 cut(s) 176, 470, 1241
XceI RCATGY 1 cut(s) 1019
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 3 cut(s) 123, 857, 1280
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.