Rroxscaffold_1G00067230

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000084
Physical Location & Seq
Forward (+)
88605802 .. 88608141
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067230.1

Sequence Viewer

Length: 1593 bp
ATGGTATCAATTGGCTTCTTCTCACGTTTTGGAAAAATTTTAGGTATGGTATCTCGCTTGCAGAGAAGAAAATTAAGAAGTACTCGAAAGAGAAAACAAACGAGGAAGAGAAGATGTCGAATTGCCGATCTGCCGGATTGCATTCTGGAATCCATACTTTCATTGATACCTCTAAGAGACGCAGTAGAAACTAGCCTGGTTTGCCGTGATTGGAGGCCCTTTTTACTAAAACGTCGCAATCTGGTATTTGACTTCGAGGGGTATGTTAGGAGGCCGCCACAGTTTGAAAAACGTGTGGATACATATTTGCAGCTGTATAAAGGTGACAAGGTTGACTCTTTCACAGTGGAATTCACTGATCAAGAAGGTGGCGACGTCCTTGATCGATGGATCCGTTTCGCAATTACAAAGGGAGTTGAAGAACTTCATCTTCGACATCACGTTTTTGATTATGTTTTCCCTCACTGGTTACTTTCTGAACAAGTAAACGCAGGCTCAAGAGTTAATCTAAAAGTTCTGTCAATATGTAGCATTGATGGTATTTTACGACCTCCTCCTGATTTTAACGGATTCAATCAGCTAAAGACTCTTCATCTAATTCATGCTATCATCGATCCAAGTTTTACGTCAAATCTCTTTTCTGTCTTTGCGTCCCTCGAAAGCTTGACCTTATATAGGTGCAGGCTTGGTCGATATCTTGCTAATACTAGAACTGATCTGAATATTGTTGCCGGTGATCGTCTAACTGAACTGAGAGTCATGGATTGCGGCCCAGCCAAAATCAAAATTTCTGCACAAAATCTTGCCTCCTTGGAATATATTAATAATCATTGGACCTCTCTTTCTCTCAAAACTCCGCATTTAGCAAGAATTTATTTGCCAGACACTGTTCACGATCCATTGTTACCTCACGTTCTAACACAATTTGCGACGTGTTCTGAGCTCGAGTCTCTTTGTCTGCGGATGTACGCGGAAACCCTAATCAATTTCAGCATGCCAACTTTTGGAAATTTGAGGAAATTGAAGGTGGATATCTGGATCCAATATGGTCGTCCATACAATGATGACAATCTTCTTCGCTTTCTGGATTTTCTCAAGGCTGCACCCGTTTTGGAAGAGCTTGTAACAGCTTTGATCGACCTCAGAAAACCCCAGAAAGCTGCTCCTACTGATGAACGAGAGATAAGGAATGTTTCTGGATTTACACATGATAATTTGAAATTAGTTAAGATGAAGAGTTTCCACGGTCACTGGTCCGAAATAGAGTTTGCGATTTGTATTATCAAGTACACAACAAATCTCAGGATAATGGAAATTGGGCCTTTCCCAAGAAGCGTTTCTGGTGACTACTTTCGGGAGAAGGTGAATTATCCAGAAGGACCTAGGGCAATTATCAAAGAAAAAATCAAGGAACGCCATCCCAGCGGTGCTTGTCGCTATCACAAAGGTGCGAGCCGAACCCAGCGACGCGAGTCTTCTAGTTGTCATCCTCACTTGCAACGTGATTCATCTCAGCGGCGTTCTCGTTTCAATTTCAACGGCGTATTTGTCGTTCGTAGCAGTGACAATTATTGTTTTCTTGGTGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

530

Amino Acids

61.46

Weight (kDa)

9.62

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 120 - 439 4.4e-31 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccII CGCG 2 cut(s) 971, 1470
AciI CCGC 7 cut(s) 275, 768, 857, 961, 971, 1425, 1516
AclWI GGATC 6 cut(s) 385, 398, 608, 890, 1033, 1046
AcsI RAATTY 5 cut(s) 36, 350, 786, 870, 1009
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 3 cut(s) 82, 968, 1289
AfiI CCNNNNNNNGG 2 cut(s) 675, 1004
AflIII ACRYGT 2 cut(s) 292, 932
AgsI TTSAA 7 cut(s) 287, 419, 574, 1024, 1219, 1531, 1537
AjiI CACGTC 1 cut(s) 933
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 1321, 1353
AleI CACNNNNGTG 1 cut(s) 1446
AluBI AGCT 7 cut(s) 313, 580, 663, 943, 1120, 1130, 1160
AluI AGCT 7 cut(s) 313, 580, 663, 943, 1120, 1130, 1160
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 2 cut(s) 171, 954
AlwI GGATC 6 cut(s) 385, 398, 608, 890, 1033, 1046
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 944
AoxI GGCC 4 cut(s) 215, 272, 769, 1319
ApeKI GCWGC 3 cut(s) 310, 1100, 1160
ApoI RAATTY 5 cut(s) 36, 350, 786, 870, 1009
AseI ATTAAT 1 cut(s) 822
Asp700I GAANNNNTTC 3 cut(s) 423, 1238, 1336
AspA2I CCTAGG 1 cut(s) 1382
AspS9I GGNCC 6 cut(s) 216, 770, 834, 1254, 1319, 1379
AsuHPI GGTGA 4 cut(s) 335, 746, 1355, 1375
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 3 cut(s) 834, 1254, 1379
AvrII CCTAGG 1 cut(s) 1382
BamHI GGATCC 2 cut(s) 390, 1038
BanII GRGCYC 1 cut(s) 945
BbsI GAAGAC 1 cut(s) 1467
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 3 cut(s) 322, 1087, 1147
BccI CCATC 3 cut(s) 381, 530, 1425
BceAI ACGGC 2 cut(s) 189, 1555
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 171, 954
BfaI CTAG 4 cut(s) 192, 708, 1383, 1479
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 6 cut(s) 275, 311, 769, 1101, 1161, 1517
BlnI CCTAGG 1 cut(s) 1382
BlsI GCNGC 6 cut(s) 276, 312, 770, 1102, 1162, 1518
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 3 cut(s) 834, 1254, 1379
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 933
BmgT120I GGNCC 6 cut(s) 216, 770, 834, 1254, 1319, 1379
BmiI GGNNCC 2 cut(s) 392, 1040
BmrFI CCNGG 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 1471
BpiI GAAGAC 1 cut(s) 1467
BpuEI CTTGAG 2 cut(s) 481, 1079
Bsa29I ATCGAT 2 cut(s) 385, 612
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 810, 1243, 1382
Bsc4I CCNNNNNNNGG 2 cut(s) 675, 1004
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 470, 1256
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 2 cut(s) 385, 612
BseDI CCNNGG 3 cut(s) 810, 1243, 1382
BseGI GGATG 3 cut(s) 969, 1417, 1486
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 2 cut(s) 675, 1004
BseMII CTCAG 5 cut(s) 743, 930, 1156, 1315, 1526
BseNI ACTGG 2 cut(s) 470, 1256
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 3 cut(s) 322, 1087, 1147
BseYI CCCAGC 3 cut(s) 772, 1421, 1461
BsgI GTGCAG 3 cut(s) 700, 777, 1086
Bsh1236I CGCG 2 cut(s) 971, 1470
BshFI GGCC 4 cut(s) 217, 274, 771, 1321
BshVI ATCGAT 2 cut(s) 385, 612
BsiHKAI GWGCWC 1 cut(s) 945
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 2 cut(s) 134, 732
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 675, 1004
BsmAI GTCTC 2 cut(s) 171, 954
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 4 cut(s) 217, 274, 771, 1321
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 1 cut(s) 945
BspACI CCGC 7 cut(s) 275, 768, 857, 961, 971, 1425, 1516
BspANI GGCC 4 cut(s) 217, 274, 771, 1321
BspCNI CTCAG 5 cut(s) 744, 931, 1155, 1314, 1525
BspDI ATCGAT 2 cut(s) 385, 612
BspFNI CGCG 2 cut(s) 971, 1470
BspLI GGNNCC 2 cut(s) 392, 1040
BspPI GGATC 6 cut(s) 385, 398, 608, 890, 1033, 1046
BspQI GCTCTTC 1 cut(s) 1110
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 2 cut(s) 470, 1256
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 3 cut(s) 810, 1243, 1382
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 810, 1382
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 282, 346, 889, 1247
Bst6I CTCTTC 4 cut(s) 101, 594, 1110, 1229
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 59, 493, 683, 995, 1453
BstDEI CTNAG 7 cut(s) 173, 752, 939, 1142, 1301, 1512, 1590
BstDSI CCRYGG 1 cut(s) 1243
BstENI CCTNNNNNAGG 1 cut(s) 673
BstF5I GGATG 3 cut(s) 969, 1417, 1486
BstFNI CGCG 2 cut(s) 971, 1470
BstMAI GTCTC 2 cut(s) 171, 954
BstMWI GCNNNNNNNGC 2 cut(s) 201, 1422
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 997
BstPAI GACNNNNGTC 1 cut(s) 1471
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 2 cut(s) 971, 1470
BstV1I GCAGC 3 cut(s) 322, 1087, 1147
BstV2I GAAGAC 1 cut(s) 1467
BstX2I RGATCY 2 cut(s) 390, 1038
BstYI RGATCY 2 cut(s) 390, 1038
Bsu15I ATCGAT 2 cut(s) 385, 612
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 4 cut(s) 217, 274, 771, 1321
BsuTUI ATCGAT 2 cut(s) 385, 612
BtgI CCRYGG 1 cut(s) 1243
BtrI CACGTC 1 cut(s) 933
BtsCI GGATG 3 cut(s) 969, 1417, 1486
BtsI GCAGTG 1 cut(s) 1567
BtsIMutI CAGTG 6 cut(s) 351, 354, 463, 885, 1249, 1567
Cac8I GCNNGC 5 cut(s) 59, 493, 683, 995, 1453
CaiI CAGNNNCTG 1 cut(s) 887
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 6 cut(s) 216, 770, 834, 1254, 1319, 1379
ClaI ATCGAT 2 cut(s) 385, 612
CseI GACGC 3 cut(s) 188, 639, 1476
Csp6I GTAC 3 cut(s) 81, 967, 1288
CviAII CATG 4 cut(s) 602, 760, 994, 1208
CviQI GTAC 3 cut(s) 81, 967, 1288
DdeI CTNAG 7 cut(s) 173, 752, 939, 1142, 1301, 1512, 1590
Eam1104I CTCTTC 4 cut(s) 101, 594, 1110, 1229
EarI CTCTTC 4 cut(s) 101, 594, 1110, 1229
Ecl136II GAGCTC 1 cut(s) 943
Eco130I CCWWGG 2 cut(s) 810, 1382
Eco24I GRGCYC 1 cut(s) 945
Eco32I GATATC 2 cut(s) 695, 1033
Eco47I GGWCC 3 cut(s) 834, 1254, 1379
Eco53kI GAGCTC 1 cut(s) 943
Eco88I CYCGRG 1 cut(s) 944
EcoICRI GAGCTC 1 cut(s) 943
EcoNI CCTNNNNNAGG 1 cut(s) 673
EcoO109I RGGNCCY 2 cut(s) 216, 1379
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 2 cut(s) 695, 1033
EcoT14I CCWWGG 2 cut(s) 810, 1382
EcoT38I GRGCYC 1 cut(s) 945
ErhI CCWWGG 2 cut(s) 810, 1382
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 4 cut(s) 605, 763, 997, 1211
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 601, 759, 993, 1207
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 6 cut(s) 275, 311, 769, 1101, 1161, 1517
FokI GGATG 3 cut(s) 976, 1404, 1473
FriOI GRGCYC 1 cut(s) 945
Fsp4HI GCNGC 6 cut(s) 275, 311, 769, 1101, 1161, 1517
FspBI CTAG 4 cut(s) 192, 708, 1383, 1479
GluI GCNGC 6 cut(s) 275, 311, 769, 1101, 1161, 1517
GsaI CCCAGC 3 cut(s) 776, 1425, 1465
HaeIII GGCC 4 cut(s) 217, 274, 771, 1321
HapII CCGG 2 cut(s) 134, 732
HgaI GACGC 3 cut(s) 188, 639, 1476
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 4 cut(s) 605, 763, 997, 1211
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 8 cut(s) 149, 335, 570, 586, 756, 947, 1472, 1505
HpaII CCGG 2 cut(s) 134, 732
HphI GGTGA 4 cut(s) 335, 746, 1355, 1375
Hpy166II GTNNAC 4 cut(s) 334, 487, 892, 1290
Hpy188I TCNGA 5 cut(s) 478, 720, 940, 1145, 1258
Hpy8I GTNNAC 4 cut(s) 334, 487, 892, 1290
Hpy99I CGWCG 4 cut(s) 237, 377, 934, 1470
HpyAV CCTTC 4 cut(s) 359, 1018, 1354, 1370
HpyCH4III ACNGT 4 cut(s) 282, 346, 889, 1247
HpyCH4IV ACGT 9 cut(s) 25, 232, 292, 375, 441, 626, 912, 932, 1501
HpyCH4V TGCA 7 cut(s) 61, 141, 310, 681, 794, 1103, 1498
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 1422
HpyF3I CTNAG 7 cut(s) 173, 752, 939, 1142, 1301, 1512, 1590
HpySE526I ACGT 9 cut(s) 25, 232, 292, 375, 441, 626, 912, 932, 1501
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 4 cut(s) 605, 763, 997, 1211
Ksp22I TGATCA 1 cut(s) 358
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 1 cut(s) 1168
Lsp1109I GCAGC 3 cut(s) 322, 1087, 1147
MaeI CTAG 4 cut(s) 192, 708, 1383, 1479
MaeII ACGT 9 cut(s) 25, 232, 292, 375, 441, 626, 912, 932, 1501
MaeIII GTNAC 7 cut(s) 323, 468, 903, 1123, 1247, 1343, 1562
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 2 cut(s) 390, 1038
MhlI GDGCHC 1 cut(s) 945
MlyI GAGTC 5 cut(s) 329, 580, 765, 956, 1481
MroXI GAANNNNTTC 3 cut(s) 423, 1238, 1336
MseI TTAA 5 cut(s) 74, 504, 564, 822, 1227
MslI CAYNNNNRTG 1 cut(s) 1446
MspA1I CMGCKG 3 cut(s) 313, 1425, 1516
MspI CCGG 2 cut(s) 134, 732
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 2 cut(s) 971, 1470
MwoI GCNNNNNNNGC 2 cut(s) 201, 1422
NlaIII CATG 4 cut(s) 605, 763, 997, 1211
NlaIV GGNNCC 2 cut(s) 392, 1040
NmuCI GTSAC 4 cut(s) 323, 1247, 1343, 1562
NspI RCATGY 1 cut(s) 997
OliI CACNNNNGTG 1 cut(s) 1446
PaeI GCATGC 1 cut(s) 997
PaeR7I CTCGAG 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 141
PdmI GAANNNNTTC 3 cut(s) 423, 1238, 1336
PfeI GAWTC 3 cut(s) 149, 570, 1505
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 6 cut(s) 276, 312, 770, 1102, 1162, 1518
PleI GAGTC 5 cut(s) 329, 580, 764, 955, 1480
PpsI GAGTC 5 cut(s) 329, 580, 764, 955, 1480
PpuMI RGGWCCY 1 cut(s) 1379
PshAI GACNNNNGTC 1 cut(s) 1471
PshBI ATTAAT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 945
Psp5II RGGWCCY 1 cut(s) 1379
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 3 cut(s) 772, 1421, 1461
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 392, 1040
PspPI GGNCC 6 cut(s) 216, 770, 834, 1254, 1319, 1379
PspPPI RGGWCCY 1 cut(s) 1379
PspXI VCTCGAGB 1 cut(s) 944
PsrI GAACNNNNNNTAC 2 cut(s) 1536, 1568
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 2 cut(s) 390, 1038
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 3 cut(s) 82, 968, 1289
RsaNI GTAC 3 cut(s) 81, 967, 1288
RseI CAYNNNNRTG 1 cut(s) 1446
SacI GAGCTC 1 cut(s) 945
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 5 cut(s) 74, 504, 564, 822, 1227
SatI GCNGC 6 cut(s) 275, 311, 769, 1101, 1161, 1517
Sau96I GGNCC 6 cut(s) 216, 770, 834, 1254, 1319, 1379
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 5 cut(s) 329, 580, 765, 956, 1481
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 945
Sfr274I CTCGAG 1 cut(s) 944
SinI GGWCC 3 cut(s) 834, 1254, 1379
SlaI CTCGAG 1 cut(s) 944
SmiMI CAYNNNNRTG 1 cut(s) 1446
SmlI CTYRAG 3 cut(s) 496, 944, 1094
SmoI CTYRAG 3 cut(s) 496, 944, 1094
SphI GCATGC 1 cut(s) 997
SsiI CCGC 7 cut(s) 275, 768, 857, 961, 971, 1425, 1516
SspI AATATT 1 cut(s) 724
SspMI CTAG 4 cut(s) 192, 708, 1383, 1479
SstI GAGCTC 1 cut(s) 945
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 810, 1382
TaaI ACNGT 4 cut(s) 282, 346, 889, 1247
TaiI ACGT 9 cut(s) 28, 235, 295, 378, 444, 629, 915, 935, 1504
TatI WGTACW 2 cut(s) 80, 1287
TauI GCSGC 3 cut(s) 277, 771, 1519
TfiI GAWTC 3 cut(s) 149, 570, 1505
Tru1I TTAA 5 cut(s) 74, 504, 564, 822, 1227
Tru9I TTAA 5 cut(s) 74, 504, 564, 822, 1227
TscAI CASTG 6 cut(s) 351, 361, 470, 892, 1256, 1567
TseFI GTSAC 4 cut(s) 323, 1247, 1343, 1562
TseI GCWGC 3 cut(s) 310, 1100, 1160
Tsp45I GTSAC 4 cut(s) 323, 1247, 1343, 1562
TspDTI ATGAA 7 cut(s) 150, 416, 581, 590, 1188, 1247, 1497
TspGWI ACGGA 2 cut(s) 383, 582
TspRI CASTG 6 cut(s) 351, 361, 470, 892, 1256, 1567
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 3 cut(s) 834, 1254, 1379
VspI ATTAAT 1 cut(s) 822
XagI CCTNNNNNAGG 1 cut(s) 673
XapI RAATTY 5 cut(s) 36, 350, 786, 870, 1009
XceI RCATGY 1 cut(s) 997
XhoI CTCGAG 1 cut(s) 944
XmaJI CCTAGG 1 cut(s) 1382
XmnI GAANNNNTTC 3 cut(s) 423, 1238, 1336
XspI CTAG 4 cut(s) 192, 708, 1383, 1479
ZraI GACGTC 1 cut(s) 376
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.