Rh2DG623100

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
85284933 .. 85288949
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG623100.1

Sequence Viewer

Length: 858 bp
ATGCAACTGTTAAGGGCATTCTGGAAAACATCAAGCTCGGCTGTGGAAGCCGAGCAGAGATTACTGAGTATAAAGGTTATCAAGATTCAACTTTCTTATAGCTGTTCAGCTTTTTATATGGAGTGTAGTGGAATAATAGCTAAGGTGGAAGGTGAGAGGAAGGATTGGATTGAAAAGTTGCCATGTTCTGTTCTGTCATACATACTTTCATTTTTAACAATAAAAGATGCTGTGGGTGCATTACCCTATGCACTAACCCTACTCGCCTCTTGTCCTGGGCTTGAGACTCTTCATTTTCAGATCTGGAATAATCTGGAAGCTATTCCCCAAACTGTTTCTACGTTTAGAAACCTGAAACAAGTGAACTTGGATCTTTTTATGCCAAACTTTGACCTTTGGAGTATTCTGAATTTTCTCAAGGCTGCACCTCTTTTGGAAGAGTTTATAGTAACGGTACAACCATCAAACTATCAAGGAGACGCAAGGAATCTTCCTGAATTCTCACATGATCATTTGAGAATATTTAAGATGCAAGGGTTCCAGGGTAAGTGGATCGAGATAGAGTTTGCGATTTGCATTCTAAGAATTGCGACAAAGCTTGAGCTATTGGTGATCGATCCACTAGGAAAATATTATAATGGTGGTGGAATGTGGTCCAAAGTCAGCTGTTATTATGTGGAGGGGAACGAGAATGAGGTCATTGATGAGCACGAAGAGGAAATGATTCTCGACAAAAAGGATGGTGTGGATTGGCATGATGTGAATTTACAGTATTTATGTTGGAAACAAAGAGCTAGTTTAGTTGTCCGAGAAAGGCTGAAAGAAGTAATGACTGATGCTCAAGTTATAATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

285

Amino Acids

32.81

Weight (kDa)

5.26

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 80 - 211 8.5e-17 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 636, 848
AclWI GGATC 3 cut(s) 378, 560, 611
AcsI RAATTY 3 cut(s) 409, 497, 763
AfaI GTAC 1 cut(s) 456
AgsI TTSAA 2 cut(s) 89, 173
AjnI CCWGG 2 cut(s) 274, 540
AluBI AGCT 9 cut(s) 36, 102, 110, 140, 320, 598, 604, 666, 794
AluI AGCT 9 cut(s) 36, 102, 110, 140, 320, 598, 604, 666, 794
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 278, 471
AlwI GGATC 3 cut(s) 378, 560, 611
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 3 cut(s) 409, 497, 763
Asp700I GAANNNNTTC 2 cut(s) 321, 723
AspS9I GGNCC 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 164, 622
AvaII GGWCC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 409
BccI CCATC 2 cut(s) 469, 734
BciT130I CCWGG 2 cut(s) 276, 542
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 278, 471
BfaI CTAG 2 cut(s) 623, 795
BglII AGATCT 1 cut(s) 300
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 276, 542
Bme18I GGWCC 1 cut(s) 654
BmgT120I GGNCC 1 cut(s) 654
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 2 cut(s) 276, 542
BmsI GCATC 3 cut(s) 217, 519, 826
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 4 cut(s) 302, 401, 620, 825
Bsa29I ATCGAT 1 cut(s) 615
BsaJI CCNNGG 2 cut(s) 275, 541
BseBI CCWGG 2 cut(s) 276, 542
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 275, 541
BseGI GGATG 1 cut(s) 745
BseMII CTCAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 711
BsmAI GTCTC 2 cut(s) 278, 471
BsmBI CGTCTC 1 cut(s) 471
BsmI GAATGC 2 cut(s) 17, 576
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 6 cut(s) 300, 370, 508, 552, 612, 616
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 539
BspPI GGATC 3 cut(s) 378, 560, 611
BssECI CCNNGG 2 cut(s) 275, 541
BssMI GATC 6 cut(s) 300, 370, 508, 552, 612, 616
Bst2UI CCWGG 2 cut(s) 276, 542
Bst4CI ACNGT 4 cut(s) 9, 334, 454, 771
Bst6I CTCTTC 3 cut(s) 294, 432, 708
BstDEI CTNAG 3 cut(s) 65, 141, 581
BstF5I GGATG 1 cut(s) 745
BstKTI GATC 6 cut(s) 303, 373, 511, 555, 615, 619
BstMAI GTCTC 2 cut(s) 278, 471
BstMBI GATC 6 cut(s) 300, 370, 508, 552, 612, 616
BstMWI GCNNNNNNNGC 2 cut(s) 47, 236
BstNI CCWGG 2 cut(s) 276, 542
BstSCI CCNGG 2 cut(s) 274, 540
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 300, 370
BstYI RGATCY 2 cut(s) 300, 370
Bsu15I ATCGAT 1 cut(s) 615
BsuTUI ATCGAT 1 cut(s) 615
BtsCI GGATG 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 654
ClaI ATCGAT 1 cut(s) 615
CseI GACGC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 455
CviAII CATG 3 cut(s) 183, 506, 755
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 3 cut(s) 65, 141, 581
DpnI GATC 6 cut(s) 302, 372, 510, 554, 614, 618
DpnII GATC 6 cut(s) 300, 370, 508, 552, 612, 616
Eam1104I CTCTTC 3 cut(s) 294, 432, 708
EarI CTCTTC 3 cut(s) 294, 432, 708
Eco47I GGWCC 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 274, 540
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 3 cut(s) 186, 509, 758
FatI CATG 3 cut(s) 182, 505, 754
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 623, 795
GluI GCNGC 1 cut(s) 423
HgaI GACGC 1 cut(s) 488
Hin1II CATG 3 cut(s) 186, 509, 758
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 4 cut(s) 85, 286, 487, 724
HphI GGTGA 2 cut(s) 164, 622
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 300, 408, 809
Hpy188III TCNNGA 7 cut(s) 22, 82, 304, 314, 494, 556, 728
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 143, 154
HpyCH4III ACNGT 4 cut(s) 9, 334, 454, 771
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 6 cut(s) 4, 239, 251, 425, 532, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 236
HpyF3I CTNAG 3 cut(s) 65, 141, 581
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 3 cut(s) 186, 509, 758
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 6 cut(s) 300, 370, 508, 552, 612, 616
LpnPI CCDG 9 cut(s) 7, 261, 288, 289, 299, 365, 507, 527, 554
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 3 cut(s) 217, 519, 826
MaeI CTAG 2 cut(s) 623, 795
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 448
MalI GATC 6 cut(s) 302, 372, 510, 554, 614, 618
MboI GATC 6 cut(s) 300, 370, 508, 552, 612, 616
MboII GAAGA 4 cut(s) 281, 449, 482, 725
MflI RGATCY 2 cut(s) 300, 370
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 4 cut(s) 409, 497, 585, 763
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 6 cut(s) 150, 277, 438, 673, 688, 709
MroXI GAANNNNTTC 2 cut(s) 321, 723
MseI TTAA 3 cut(s) 11, 215, 525
MspA1I CMGCKG 1 cut(s) 666
MspR9I CCNGG 2 cut(s) 276, 542
Mva1269I GAATGC 2 cut(s) 17, 576
MvaI CCWGG 2 cut(s) 276, 542
MwoI GCNNNNNNNGC 2 cut(s) 47, 236
NdeII GATC 6 cut(s) 300, 370, 508, 552, 612, 616
NlaIII CATG 3 cut(s) 186, 509, 758
NlaIV GGNNCC 1 cut(s) 539
NmeAIII GCCGAG 2 cut(s) 17, 76
PctI GAATGC 2 cut(s) 17, 576
PdmI GAANNNNTTC 2 cut(s) 321, 723
PfeI GAWTC 3 cut(s) 85, 487, 724
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PsiI TTATAA 2 cut(s) 636, 848
Psp6I CCWGG 2 cut(s) 274, 540
PspGI CCWGG 2 cut(s) 274, 540
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 654
PsuI RGATCY 2 cut(s) 300, 370
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 11, 215, 525
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 6 cut(s) 300, 370, 508, 552, 612, 616
Sau96I GGNCC 1 cut(s) 654
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 276, 542
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 3 cut(s) 217, 519, 826
SinI GGWCC 1 cut(s) 654
SmlI CTYRAG 4 cut(s) 281, 416, 599, 840
SmoI CTYRAG 4 cut(s) 281, 416, 599, 840
Sse9I AATT 4 cut(s) 409, 497, 585, 763
SspI AATATT 2 cut(s) 522, 632
SspMI CTAG 2 cut(s) 623, 795
StyD4I CCNGG 2 cut(s) 274, 540
TaaI ACNGT 4 cut(s) 9, 334, 454, 771
TaiI ACGT 1 cut(s) 344
TaqI TCGA 3 cut(s) 555, 615, 729
TasI AATT 4 cut(s) 409, 497, 585, 763
TfiI GAWTC 3 cut(s) 85, 487, 724
Tru1I TTAA 3 cut(s) 11, 215, 525
Tru9I TTAA 3 cut(s) 11, 215, 525
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 198, 281
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 3 cut(s) 409, 497, 763
XmnI GAANNNNTTC 2 cut(s) 321, 723
XspI CTAG 2 cut(s) 623, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.