Rh1AG062000

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000084
Physical Location & Seq
Forward (+)
10365895 .. 10371192
5298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG062000.1

Sequence Viewer

Length: 1452 bp
ATGTACGGTTCGCTCTCTCAATCTGTCTCACCCTCACAGCCTCACATCGCCGTCGGTCTCTGTTCGTCATCGTGCCTCCGACGTCGGGCCTCCGTGCGGGGCGATCCTCCACTCCACTACTCCTCCAGTCTTCCAGGCCACGGGTTCTCCATCTGGAATTCTGGATATTTGGGCGTTCTTGTTTCTGTTGTTGGCTTGGTCAGATTGTTCTCGAAAGCACTTAAGATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAGATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGTATTAGATATGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGTGAAAGCAATGGGTTTTGATGTTAGAACGGATGACAAGAGAACAAGTGCAAGGACTGGGAGAGTCACTATCCGCAAATGGGTTTGTTCTGCAGAGGGGGAAAGACTAGAGAAATATATGGACAACAATAATAATGTCCGTATGCCAAAGAAATTGACAAGGTGTCACTGCCCATGTTTGTTCAAGCTTGATAAAGCATTGGAACGACTTAGAAATAAAGTAGCTGAAGAAGATTTTCGATCGAATAACTCCGCTCATGTACTTTCTACCCAACTCAGACAGTTAGAGAAGCATGCCTCTACCATTTATACGGATAATGTGTTTCAACTAATATGTGTGGAGATAGATCGGGTTGGAGGACTGATAACTTCAAGGATTATGCATCTGAATTCATGTCGTGTGTACATTACGTCTAGTTATAACAATGATGAAGAGAAAGAGTGCACAACTACTTATTACCATCGGGAAAGTGATCCTCGAGTAGTATGCTCTTGCAAAGTTTATGAATGTGAAGGCATCCCATGTTCTCATTTATTTAATGTAATGAAGCATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGCGGTGGACAAAGCAAGCAAAATCTGAAGTTCACTCCACAGTTCCCAAGGAAAATATGCCTAGTGAAGCTGTACGATTGGCCAGGCATGGAGATTTAAGTTATTTAAGTAGCAGGGTATCATATCTTGCTTCACAGACAAAGGAGGGTACCGACATTTTGAAGAAAGAACTCAGCAGATTGGAGCCGATACTTGGAGATGTTTTGAAGCAACAAAAAGATGTAGGTGATAGTCCAGATCCATGTAATAACATTGTAAGAGATCCTATCAGGGTAAGGAGCAAGGGCATGCAAGGAAGCAATGAACCAAAAACAAAGCCAAAATGTCGTTTATGCAGAAGCTATGGACACAATAAAACTACATGCCCACAGAAGAATAGGGTACGTGGCAGAGTTAGAGTTGTGGCAAAAAATAAACCCAAACTTCGACAGCTCAGTGATATTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

483

Amino Acids

54.77

Weight (kDa)

9.17

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 132 - 199 2.9e-09 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AatII GACGTC 1 cut(s) 85
Acc65I GGTACC 1 cut(s) 1148
AccB1I GGYRCC 1 cut(s) 1148
AccBSI CCGCTC 1 cut(s) 665
AciI CCGC 4 cut(s) 97, 484, 663, 1003
AclWI GGATC 4 cut(s) 98, 878, 1232, 1256
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 2 cut(s) 157, 799
AcuI CTGAAG 2 cut(s) 657, 1047
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 6 cut(s) 5, 672, 815, 1074, 1150, 1383
AfiI CCNNNNNNNGG 5 cut(s) 85, 96, 140, 490, 1193
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 6 cut(s) 595, 737, 783, 1162, 1207, 1445
AhdI GACNNNNNGTC 1 cut(s) 573
AjnI CCWGG 2 cut(s) 133, 1082
AluBI AGCT 5 cut(s) 598, 635, 1070, 1341, 1432
AluI AGCT 5 cut(s) 598, 635, 1070, 1341, 1432
Alw21I GWGCWC 1 cut(s) 857
Alw26I GTCTC 3 cut(s) 31, 62, 386
Alw44I GTGCAC 1 cut(s) 853
AlwI GGATC 4 cut(s) 98, 878, 1232, 1256
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 3 cut(s) 87, 136, 1080
ApaLI GTGCAC 1 cut(s) 853
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 2 cut(s) 157, 799
Asp700I GAANNNNTTC 1 cut(s) 645
Asp718I GGTACC 1 cut(s) 1148
AspLEI GCGC 1 cut(s) 969
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 21, 1238
AvaI CYCGRG 1 cut(s) 888
BaeGI GKGCMC 1 cut(s) 857
BaeI ACNNNNGTAYC 2 cut(s) 971, 1004
BalI TGGCCA 1 cut(s) 1082
BanI GGYRCC 1 cut(s) 1148
BbsI GAAGAC 2 cut(s) 122, 357
Bbv12I GWGCWC 1 cut(s) 857
BbvI GCAGC 1 cut(s) 398
BccI CCATC 2 cut(s) 158, 879
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 879, 913
BciT130I CCWGG 2 cut(s) 135, 1084
BcoDI GTCTC 3 cut(s) 31, 62, 386
BfaI CTAG 3 cut(s) 518, 825, 1062
BfmI CTRYAG 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 135, 1084
BmeRI GACNNNNNGTC 1 cut(s) 573
BmeT110I CYCGRG 1 cut(s) 888
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 3 cut(s) 345, 1150, 1185
BmrFI CCNGG 2 cut(s) 135, 1084
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 4 cut(s) 229, 309, 802, 936
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 122, 357
BpmI CTGGAG 2 cut(s) 109, 330
BsaAI YACGTR 1 cut(s) 1385
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 139, 1047
BsaXI ACNNNNNCTCC 4 cut(s) 107, 131, 137, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 96, 140, 490, 1193
Bse1I ACTGG 2 cut(s) 126, 472
Bse3DI GCAATG 2 cut(s) 426, 1306
BseBI CCWGG 2 cut(s) 135, 1084
BseDI CCNNGG 2 cut(s) 139, 1047
BseGI GGATG 3 cut(s) 244, 448, 927
BseLI CCNNNNNNNGG 5 cut(s) 85, 96, 140, 490, 1193
BseMI GCAATG 2 cut(s) 426, 1306
BseMII CTCAG 4 cut(s) 252, 700, 1186, 1447
BseNI ACTGG 2 cut(s) 126, 472
BseRI GAGGAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 857
BseXI GCAGC 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 653
BshFI GGCC 3 cut(s) 89, 138, 1082
BshNI GGYRCC 1 cut(s) 1148
BsiEI CGRYCG 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 857
BsiHKCI CYCGRG 1 cut(s) 888
BslI CCNNNNNNNGG 5 cut(s) 85, 96, 140, 490, 1193
BsmAI GTCTC 3 cut(s) 31, 62, 386
BsnI GGCC 3 cut(s) 89, 138, 1082
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 857
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
BspACI CCGC 4 cut(s) 97, 484, 663, 1003
BspANI GGCC 3 cut(s) 89, 138, 1082
BspCNI CTCAG 4 cut(s) 253, 699, 1185, 1446
BspLI GGNNCC 3 cut(s) 345, 1150, 1185
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 4 cut(s) 98, 878, 1232, 1256
BspT107I GGYRCC 1 cut(s) 1148
BspTI CTTAAG 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 426, 1306
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 2 cut(s) 126, 472
BssECI CCNNGG 2 cut(s) 139, 1047
BssMI GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 1047
Bst2UI CCWGG 2 cut(s) 135, 1084
Bst4CI ACNGT 4 cut(s) 8, 379, 693, 1042
Bst6I CTCTTC 1 cut(s) 837
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 813
BstBAI YACGTR 1 cut(s) 1385
BstC8I GCNNGC 3 cut(s) 705, 1017, 1289
BstDEI CTNAG 6 cut(s) 261, 620, 686, 991, 1172, 1433
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 244, 448, 927
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 6 cut(s) 106, 653, 760, 886, 1240, 1264
BstMAI GTCTC 3 cut(s) 31, 62, 386
BstMBI GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
BstMCI CGRYCG 1 cut(s) 653
BstNI CCWGG 2 cut(s) 135, 1084
BstNSI RCATGY 3 cut(s) 707, 1291, 1365
BstSCI CCNGG 2 cut(s) 133, 1082
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 857
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 2 cut(s) 122, 357
BstX2I RGATCY 2 cut(s) 1237, 1261
BstYI RGATCY 2 cut(s) 1237, 1261
BsuRI GGCC 3 cut(s) 89, 138, 1082
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 3 cut(s) 244, 448, 927
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 2 cut(s) 577, 1441
Cac8I GCNNGC 3 cut(s) 705, 1017, 1289
CfoI GCGC 1 cut(s) 969
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 6 cut(s) 4, 671, 814, 1073, 1149, 1382
CviQI GTAC 6 cut(s) 4, 671, 814, 1073, 1149, 1382
DdeI CTNAG 6 cut(s) 261, 620, 686, 991, 1172, 1433
DpnI GATC 6 cut(s) 105, 652, 759, 885, 1239, 1263
DpnII GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
DriI GACNNNNNGTC 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 1 cut(s) 837
Eam1105I GACNNNNNGTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 1047
Eco31I GGTCTC 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 657, 1047
Eco88I CYCGRG 1 cut(s) 888
EcoRI GAATTC 2 cut(s) 157, 799
EcoRII CCWGG 2 cut(s) 133, 1082
EcoT14I CCWWGG 1 cut(s) 1047
EcoT22I ATGCAT 2 cut(s) 244, 795
ErhI CCWWGG 1 cut(s) 1047
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 3 cut(s) 251, 455, 914
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 3 cut(s) 518, 825, 1062
GlaI GCGC 1 cut(s) 968
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 109, 330
HaeIII GGCC 3 cut(s) 89, 138, 1082
HhaI GCGC 1 cut(s) 969
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 2 cut(s) 287, 474
HphI GGTGA 2 cut(s) 21, 1238
Hpy166II GTNNAC 4 cut(s) 814, 855, 1008, 1033
Hpy188I TCNGA 7 cut(s) 80, 203, 271, 292, 689, 798, 1027
Hpy188III TCNNGA 7 cut(s) 154, 162, 211, 236, 347, 875, 1235
Hpy8I GTNNAC 4 cut(s) 814, 855, 1008, 1033
Hpy99I CGWCG 3 cut(s) 56, 84, 87
HpyAV CCTTC 1 cut(s) 917
HpyCH4III ACNGT 4 cut(s) 8, 379, 693, 1042
HpyCH4IV ACGT 3 cut(s) 82, 821, 1384
HpyCH4V TGCA 9 cut(s) 242, 283, 461, 503, 793, 855, 906, 1291, 1335
HpyF3I CTNAG 6 cut(s) 261, 620, 686, 991, 1172, 1433
HpySE526I ACGT 3 cut(s) 82, 821, 1384
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 1 cut(s) 967
KpnI GGTACC 1 cut(s) 1152
Kzo9I GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
LmnI GCTCC 3 cut(s) 349, 1183, 1278
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 4 cut(s) 229, 309, 802, 936
MaeI CTAG 3 cut(s) 518, 825, 1062
MaeII ACGT 3 cut(s) 82, 821, 1384
MaeIII GTNAC 3 cut(s) 373, 475, 575
MalI GATC 6 cut(s) 105, 652, 759, 885, 1239, 1263
MbiI CCGCTC 1 cut(s) 665
MboI GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
MboII GAAGA 7 cut(s) 122, 362, 650, 653, 854, 1174, 1384
MflI RGATCY 2 cut(s) 1237, 1261
MhlI GDGCHC 1 cut(s) 857
MlsI TGGCCA 1 cut(s) 1082
MluCI AATT 4 cut(s) 157, 277, 563, 799
MluNI TGGCCA 1 cut(s) 1082
MlyI GAGTC 2 cut(s) 296, 483
MmeI TCCRAC 3 cut(s) 103, 291, 745
Mox20I TGGCCA 1 cut(s) 1082
Mph1103I ATGCAT 2 cut(s) 244, 795
MroXI GAANNNNTTC 1 cut(s) 645
MscI TGGCCA 1 cut(s) 1082
MseI TTAA 5 cut(s) 222, 948, 998, 1097, 1106
Msp20I TGGCCA 1 cut(s) 1082
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 135, 1084
MvaI CCWGG 2 cut(s) 135, 1084
NdeII GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
NlaIV GGNNCC 3 cut(s) 345, 1150, 1185
NmuCI GTSAC 2 cut(s) 475, 575
NsiI ATGCAT 2 cut(s) 244, 795
NspI RCATGY 3 cut(s) 707, 1291, 1365
PaeI GCATGC 2 cut(s) 707, 1291
PaeR7I CTCGAG 1 cut(s) 888
PdmI GAANNNNTTC 1 cut(s) 645
PkrI GCNGC 1 cut(s) 388
Ple19I CGATCG 1 cut(s) 653
PleI GAGTC 2 cut(s) 295, 482
PpsI GAGTC 2 cut(s) 295, 482
Ppu21I YACGTR 1 cut(s) 1385
PsiI TTATAA 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 133, 1082
PspGI CCWGG 2 cut(s) 133, 1082
PspN4I GGNNCC 3 cut(s) 345, 1150, 1185
PspPI GGNCC 1 cut(s) 87
PspXI VCTCGAGB 1 cut(s) 888
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 1237, 1261
PvuI CGATCG 1 cut(s) 653
RsaI GTAC 6 cut(s) 5, 672, 815, 1074, 1150, 1383
RsaNI GTAC 6 cut(s) 4, 671, 814, 1073, 1149, 1382
SaqAI TTAA 5 cut(s) 222, 948, 998, 1097, 1106
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 6 cut(s) 103, 650, 757, 883, 1237, 1261
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 2 cut(s) 296, 483
ScrFI CCNGG 2 cut(s) 135, 1084
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 4 cut(s) 229, 309, 802, 936
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 888
SlaI CTCGAG 1 cut(s) 888
SmlI CTYRAG 2 cut(s) 221, 888
SmoI CTYRAG 2 cut(s) 221, 888
SphI GCATGC 2 cut(s) 707, 1291
Sse9I AATT 4 cut(s) 157, 277, 563, 799
SsiI CCGC 4 cut(s) 97, 484, 663, 1003
SspMI CTAG 3 cut(s) 518, 825, 1062
StyD4I CCNGG 2 cut(s) 133, 1082
StyI CCWWGG 1 cut(s) 1047
TaaI ACNGT 4 cut(s) 8, 379, 693, 1042
TaiI ACGT 3 cut(s) 85, 824, 1387
TaqI TCGA 5 cut(s) 212, 649, 653, 889, 1426
TaqII GACCGA 1 cut(s) 44
TasI AATT 4 cut(s) 157, 277, 563, 799
TatI WGTACW 2 cut(s) 670, 813
Tru1I TTAA 5 cut(s) 222, 948, 998, 1097, 1106
Tru9I TTAA 5 cut(s) 222, 948, 998, 1097, 1106
TscAI CASTG 2 cut(s) 584, 1441
TseFI GTSAC 2 cut(s) 475, 575
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 475, 575
TspDTI ATGAA 6 cut(s) 264, 792, 855, 930, 971, 1317
TspGWI ACGGA 4 cut(s) 82, 455, 539, 737
TspRI CASTG 2 cut(s) 584, 1441
Vha464I CTTAAG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 853
XapI RAATTY 2 cut(s) 157, 799
XceI RCATGY 3 cut(s) 707, 1291, 1365
XhoI CTCGAG 1 cut(s) 888
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 3 cut(s) 518, 825, 1062
ZraI GACGTC 1 cut(s) 83
Zsp2I ATGCAT 2 cut(s) 244, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.