Rh2DG613100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000084
Physical Location & Seq
Reverse (-)
84488489 .. 84507746
19258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG613100.1

Sequence Viewer

Length: 1797 bp
ATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTTACCAATCAGGTACTACCTCAAAGGCTACCGACATTTGGAAACCTCAAGCTACTTGACTTGGATTCGTGGATATTTGACATTGGGAGCCTTCTAAGCTTTCTTATAGCCACACCTCTTTTGGAAGAACTTCTATTAACGGTATATTCATCCCAGTATCAGAGAGAGATAATTGATCTTACTGAATTCTCCCATGATCACTTGAAAAAAGCTGCAAGTGAGAGTAATGATCGAATTAATGAGTTGCCCGATTGCATTCTCTTGTCCATTCTTTCATTGTTAACCCTAAAAGATGCGGTGACTACTAGCATGTTATGCCGTCGGTGGAGGAACTTGTGGAAGGACCTCTGGTTGACAAAGCGGAATCTTGAATTCGACATTCCAAACATTTTCGGAAGCCAATATGCGCAACTCATTGATATACATGAAGAAGACTATCGTTACTATGATTATCCAGGGCTGAAACGGTTTGAAAGACAACAATTCGTAAGCTGTGTGAATTCATTGTTGGGGTTGTACCTTGGCAATAAGGTGGACTCTTTCAAAGTGGCATTCTTTTTGGATGGAGAATCTACTAAAGATCTTGACAATTGGGTTCGTTTTGCAATTACAAAGGGTGCTCAAGTGCTTCACCTTCATTTGAGAGGAGGAATAGAGACAGTTTATCACTTTCCTTATTGGATTCTTACAGAATCGGATTCGTCAGTGCTAAAGCATTTGTCATTGGAGAAATGTGCTCTAAGTCCTCCTCCTAATTATTTTGACAGATTCAATGAGCTAAAAACTCTTTGGCTAGATAACGTTACCATCAATACAATTTTTATGGCACATCTGTTTTCTGTCTGCGTGACCCTCGAAAGCTTGACCTTAAAAAGTTGCTCGATGGGTTCTACTTTGGTTGTTGCTGGTGAACATCCTGGTGATCAATCACTTCGTCTGCAGGAGTTGAAACTGCTTCAATGTTACGAACTCGAACAAGTAGCGATTTCTGCAGTAAATCTCACCTCCTTAGAATTCGAGGGAAACTTTTTGAGGATCTATTACTTCGATACTCCGCGGTTAGAAAGTGTTTTTCTGTGTGCCAGAGCTAAATTTATACTACCTCGTGAACTAACCATTTTCGCATCATTTCCTGAGCTTGAGACTCTCAATCTGCGCTTGTGGCATGGGGTGGCACTGCCCAGAAACATACCAACATTTGCAAACCTCAGGGTACTTGACTTGGATTCGTGGGTGTTCGACATCCGGAGCCTTGTGAAGCTTCTCATGGCTGTGCCTCTTTTGGAAGAACTTGTATTAACGGTCTATGCATCCCACCTTCAACGAAAGATGAGGAATCTTTCTGGATTCTCACATGATCACTTGAAAAACGTCAAGTTTCAAAGGTTCCATAGCAATTCGCACATGATAGAGTTGGCCATTTGTATTCTGGAAATTGCAACGAAGCTAGAGACAATGGTAATAGATCCTTTAGGAAAACTATATGTGGGTGGTGGAGTGTGGCGGGAAGTTTACCGAAATGAAAATGAAGATGAATATTCAGATGAAGATGAAGATATGTATGAAGATTATGATGGAGTTGAAGATACAGATGATAGTGAAGATGAAGATGAAGAAGAAGAGGAAGACGAAGACGAAGATGAAGACGATAATAATGATGAAGATGGAGAAAAATCAAATTCATCTTGGGAAGACAGGGGAAGGAAAATTGTTCAAGAAAAGCTGAATGAAGTAATGTCTGATGCTCGAATTATAATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

598

Amino Acids

69.39

Weight (kDa)

4.72

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 90 - 131 1.6e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 193 - 501 1.9e-44 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 206 - 308 9e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1787
Acc16I TGCGCA 1 cut(s) 441
AccII CGCG 1 cut(s) 1090
AccIII TCCGGA 1 cut(s) 1278
AciI CCGC 5 cut(s) 329, 394, 1088, 1090, 1537
AclI AACGTT 1 cut(s) 834
AclWI GGATC 2 cut(s) 1076, 1493
AcoI YGGCCR 2 cut(s) 24, 1449
AcsI RAATTY 6 cut(s) 218, 404, 532, 1046, 1124, 1711
AfaI GTAC 3 cut(s) 48, 551, 1248
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 2 cut(s) 487, 949
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
Alw21I GWGCWC 2 cut(s) 655, 772
Alw26I GTCTC 3 cut(s) 683, 1169, 1478
AlwI GGATC 2 cut(s) 1076, 1493
Aor13HI TCCGGA 1 cut(s) 1278
AoxI GGCC 2 cut(s) 24, 1449
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 6 cut(s) 218, 404, 532, 1046, 1124, 1711
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 2 cut(s) 442, 1191
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 5 cut(s) 343, 656, 953, 965, 1027
AvaII GGWCC 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 1241
BalI TGGCCA 2 cut(s) 26, 1451
BauI CACGAG 1 cut(s) 1137
BbsI GAAGAC 5 cut(s) 471, 1665, 1671, 1683, 1731
Bbv12I GWGCWC 2 cut(s) 655, 772
BbvI GCAGC 1 cut(s) 232
BccI CCATC 5 cut(s) 590, 848, 910, 1601, 1691
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 2 cut(s) 489, 951
BclI TGATCA 3 cut(s) 229, 955, 1390
BcoDI GTCTC 3 cut(s) 683, 1169, 1478
BfaI CTAG 3 cut(s) 339, 827, 1481
BfmI CTRYAG 2 cut(s) 971, 1023
BglII AGATCT 1 cut(s) 613
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 489, 951
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 122, 1283, 1421
BmrFI CCNGG 2 cut(s) 489, 951
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 4 cut(s) 316, 1166, 1352, 1765
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 5 cut(s) 471, 1665, 1671, 1683, 1731
Bpu10I CCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 3 cut(s) 65, 639, 1193
BsaJI CCNNGG 4 cut(s) 27, 488, 553, 1088
BsaWI WCCGGW 1 cut(s) 1278
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 1241
BseAI TCCGGA 1 cut(s) 1278
BseBI CCWGG 2 cut(s) 489, 951
BseDI CCNNGG 4 cut(s) 27, 488, 553, 1088
BseGI GGATG 5 cut(s) 182, 601, 946, 1275, 1343
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 1158, 1255
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 693, 771
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 1090
BshFI GGCC 2 cut(s) 26, 1451
BsiHKAI GWGCWC 2 cut(s) 655, 772
BsiSI CCGG 1 cut(s) 1279
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 3 cut(s) 683, 1169, 1478
BsmI GAATGC 2 cut(s) 288, 584
BsnI GGCC 2 cut(s) 26, 1451
Bsp1286I GDGCHC 2 cut(s) 655, 772
Bsp13I TCCGGA 1 cut(s) 1278
Bsp143I GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
BspACI CCGC 5 cut(s) 329, 394, 1088, 1090, 1537
BspANI GGCC 2 cut(s) 26, 1451
BspCNI CTCAG 2 cut(s) 1159, 1254
BspEI TCCGGA 1 cut(s) 1278
BspFNI CGCG 1 cut(s) 1090
BspLI GGNNCC 3 cut(s) 122, 1283, 1421
BspMAI CTGCAG 2 cut(s) 975, 1027
BspPI GGATC 2 cut(s) 1076, 1493
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 4 cut(s) 27, 488, 553, 1088
BssMI GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
BssSI CACGAG 1 cut(s) 1137
BssT1I CCWWGG 2 cut(s) 27, 553
Bst2BI CACGAG 1 cut(s) 1137
Bst2UI CCWGG 2 cut(s) 489, 951
Bst4CI ACNGT 4 cut(s) 175, 501, 694, 1336
Bst6I CTCTTC 1 cut(s) 1647
BstAPI GCANNNNNTGC 1 cut(s) 348
BstDEI CTNAG 5 cut(s) 128, 773, 1042, 1167, 1241
BstDSI CCRYGG 1 cut(s) 1088
BstF5I GGATG 5 cut(s) 182, 601, 946, 1275, 1343
BstFNI CGCG 1 cut(s) 1090
BstHHI GCGC 2 cut(s) 442, 1191
BstKTI GATC 8 cut(s) 211, 232, 265, 616, 958, 1071, 1393, 1501
BstMAI GTCTC 3 cut(s) 683, 1169, 1478
BstMBI GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
BstMWI GCNNNNNNNGC 4 cut(s) 129, 348, 1022, 1195
BstNI CCWGG 2 cut(s) 489, 951
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 487, 949
BstSFI CTRYAG 2 cut(s) 971, 1023
BstUI CGCG 1 cut(s) 1090
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 5 cut(s) 471, 1665, 1671, 1683, 1731
BstX2I RGATCY 3 cut(s) 613, 1068, 1498
BstYI RGATCY 3 cut(s) 613, 1068, 1498
Bsu36I CCTNAGG 1 cut(s) 1241
BsuRI GGCC 2 cut(s) 26, 1451
BtgI CCRYGG 1 cut(s) 1088
BtsCI GGATG 5 cut(s) 182, 601, 946, 1275, 1343
BtsI GCAGTG 1 cut(s) 1208
BtsIMutI CAGTG 2 cut(s) 744, 1208
CfoI GCGC 2 cut(s) 442, 1191
Cfr13I GGNCC 1 cut(s) 376
Cfr42I CCGCGG 1 cut(s) 1091
Csp6I GTAC 3 cut(s) 47, 550, 1247
CviAII CATG 8 cut(s) 22, 227, 343, 458, 1199, 1300, 1388, 1438
CviQI GTAC 3 cut(s) 47, 550, 1247
DdeI CTNAG 5 cut(s) 128, 773, 1042, 1167, 1241
DpnI GATC 8 cut(s) 210, 231, 264, 615, 957, 1070, 1392, 1500
DpnII GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
EaeI YGGCCR 2 cut(s) 24, 1449
Eam1104I CTCTTC 1 cut(s) 1647
EarI CTCTTC 1 cut(s) 1647
Eco130I CCWWGG 2 cut(s) 27, 553
Eco47I GGWCC 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 1241
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 4 cut(s) 218, 404, 532, 1046
EcoRII CCWGG 2 cut(s) 487, 949
EcoT14I CCWWGG 2 cut(s) 27, 553
EcoT22I ATGCAT 1 cut(s) 1345
ErhI CCWWGG 2 cut(s) 27, 553
FaeI CATG 8 cut(s) 25, 230, 346, 461, 1202, 1303, 1391, 1441
FatI CATG 8 cut(s) 21, 226, 342, 457, 1198, 1299, 1387, 1437
FauI CCCGC 1 cut(s) 1530
FbaI TGATCA 3 cut(s) 229, 955, 1390
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 5 cut(s) 169, 608, 933, 1262, 1330
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 339, 827, 1481
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 2 cut(s) 441, 1190
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 26, 1451
HapII CCGG 1 cut(s) 1279
HhaI GCGC 2 cut(s) 442, 1191
Hin1II CATG 8 cut(s) 25, 230, 346, 461, 1202, 1303, 1391, 1441
Hin6I GCGC 2 cut(s) 440, 1189
HinP1I GCGC 2 cut(s) 440, 1189
HincII GTYRAC 2 cut(s) 315, 387
HindII GTYRAC 2 cut(s) 315, 387
HindIII AAGCTT 3 cut(s) 130, 892, 1292
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 1 cut(s) 1279
HphI GGTGA 5 cut(s) 343, 656, 953, 965, 1027
Hpy166II GTNNAC 6 cut(s) 315, 387, 568, 944, 1142, 1546
Hpy188I TCNGA 5 cut(s) 195, 428, 730, 1576, 1774
Hpy188III TCNNGA 8 cut(s) 401, 617, 1139, 1166, 1279, 1377, 1463, 1748
Hpy8I GTNNAC 6 cut(s) 315, 387, 568, 944, 1142, 1546
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 5 cut(s) 134, 367, 677, 1361, 1728
HpyCH4III ACNGT 4 cut(s) 175, 501, 694, 1336
HpyCH4IV ACGT 2 cut(s) 834, 1404
HpyCH4V TGCA 8 cut(s) 248, 288, 638, 973, 1025, 1235, 1343, 1472
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 348, 1022, 1195
HpyF3I CTNAG 5 cut(s) 128, 773, 1042, 1167, 1241
HpySE526I ACGT 2 cut(s) 834, 1404
Hsp92II CATG 8 cut(s) 25, 230, 346, 461, 1202, 1303, 1391, 1441
HspAI GCGC 2 cut(s) 440, 1189
Kpn2I TCCGGA 1 cut(s) 1278
Ksp22I TGATCA 3 cut(s) 229, 955, 1390
KspAI GTTAAC 1 cut(s) 315
KspI CCGCGG 1 cut(s) 1091
Kzo9I GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
LmnI GCTCC 2 cut(s) 120, 1281
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 4 cut(s) 316, 1166, 1352, 1765
MaeI CTAG 3 cut(s) 339, 827, 1481
MaeII ACGT 2 cut(s) 834, 1404
MaeIII GTNAC 6 cut(s) 34, 331, 473, 835, 880, 995
MalI GATC 8 cut(s) 210, 231, 264, 615, 957, 1070, 1392, 1500
MboI GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
MfeI CAATTG 1 cut(s) 622
MflI RGATCY 3 cut(s) 613, 1068, 1498
MhlI GDGCHC 2 cut(s) 655, 772
MlsI TGGCCA 2 cut(s) 26, 1451
MluNI TGGCCA 2 cut(s) 26, 1451
MlyI GAGTC 2 cut(s) 563, 1171
Mox20I TGGCCA 2 cut(s) 26, 1451
Mph1103I ATGCAT 1 cut(s) 1345
MroI TCCGGA 1 cut(s) 1278
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 2 cut(s) 26, 1451
MseI TTAA 5 cut(s) 170, 270, 314, 902, 1331
MslI CAYNNNNRTG 2 cut(s) 951, 1304
Msp20I TGGCCA 2 cut(s) 26, 1451
MspA1I CMGCKG 1 cut(s) 1090
MspI CCGG 1 cut(s) 1279
MspR9I CCNGG 2 cut(s) 489, 951
MunI CAATTG 1 cut(s) 622
Mva1269I GAATGC 2 cut(s) 288, 584
MvaI CCWGG 2 cut(s) 489, 951
MvnI CGCG 1 cut(s) 1090
MwoI GCNNNNNNNGC 4 cut(s) 129, 348, 1022, 1195
NdeII GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
NlaIII CATG 8 cut(s) 25, 230, 346, 461, 1202, 1303, 1391, 1441
NlaIV GGNNCC 3 cut(s) 122, 1283, 1421
NmuCI GTSAC 2 cut(s) 331, 880
NsbI TGCGCA 1 cut(s) 441
NsiI ATGCAT 1 cut(s) 1345
NspI RCATGY 1 cut(s) 346
PctI GAATGC 2 cut(s) 288, 584
PdmI GAANNNNTTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 2 cut(s) 563, 1171
PpsI GAGTC 2 cut(s) 563, 1171
PpuMI RGGWCCY 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 1787
Psp1406I AACGTT 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 2 cut(s) 487, 949
PspGI CCWGG 2 cut(s) 487, 949
PspN4I GGNNCC 3 cut(s) 122, 1283, 1421
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 2 cut(s) 975, 1027
PsuI RGATCY 3 cut(s) 613, 1068, 1498
RsaI GTAC 3 cut(s) 48, 551, 1248
RsaNI GTAC 3 cut(s) 47, 550, 1247
RseI CAYNNNNRTG 2 cut(s) 951, 1304
SacII CCGCGG 1 cut(s) 1091
SaqAI TTAA 5 cut(s) 170, 270, 314, 902, 1331
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 8 cut(s) 208, 229, 262, 613, 955, 1068, 1390, 1498
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 563, 1171
ScrFI CCNGG 2 cut(s) 489, 951
SduI GDGCHC 2 cut(s) 655, 772
SfaNI GCATC 4 cut(s) 316, 1166, 1352, 1765
SfcI CTRYAG 2 cut(s) 971, 1023
Sfr303I CCGCGG 1 cut(s) 1091
SgrBI CCGCGG 1 cut(s) 1091
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 2 cut(s) 951, 1304
SmlI CTYRAG 3 cut(s) 80, 654, 1172
SmoI CTYRAG 3 cut(s) 80, 654, 1172
SsiI CCGC 5 cut(s) 329, 394, 1088, 1090, 1537
SspI AATATT 1 cut(s) 1571
SspMI CTAG 3 cut(s) 339, 827, 1481
StyD4I CCNGG 2 cut(s) 487, 949
StyI CCWWGG 2 cut(s) 27, 553
TaaI ACNGT 4 cut(s) 175, 501, 694, 1336
TaiI ACGT 2 cut(s) 837, 1407
TaqI TCGA 9 cut(s) 265, 408, 888, 914, 1005, 1050, 1080, 1272, 1780
Tru1I TTAA 5 cut(s) 170, 270, 314, 902, 1331
Tru9I TTAA 5 cut(s) 170, 270, 314, 902, 1331
TscAI CASTG 2 cut(s) 744, 1215
TseFI GTSAC 2 cut(s) 331, 880
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 331, 880
TspRI CASTG 2 cut(s) 744, 1215
VpaK11BI GGWCC 1 cut(s) 376
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 6 cut(s) 218, 404, 532, 1046, 1124, 1711
XceI RCATGY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 1459
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 339, 827, 1481
Zsp2I ATGCAT 1 cut(s) 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.