Rroxscaffold_2G00102510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000084
Physical Location & Seq
Reverse (-)
24688411 .. 24707610
19200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102510.1

Sequence Viewer

Length: 528 bp
ATGAAGAAATCGAAGCGAGTGGTGGACGTTTTCACGTTGAACGGAGGCTGCCGCCGTTTTACGCAAATTTTCCGGCGAACCCGTGGCTTCAAGGTGCGTGAGACAGAGTTGACTAAGGTTTTGAATGAATATTGGATGACCAAGTTCCATGAAGAAATCGAAGCAAGTGGTGGACGTTTTCACGTTGAACGGAGGCCGCCGTTTTCTCGCAAATTTTCCTGCGAACCCGTGGCTTCAAGAGTGCCAAAGCCAAAGGTTGAAGCTTTCACTCACTTTGAGTGGCATATCTCTTTGAGGCTCGACTCTCCTTCAGACCTGGTGGTAGAAGATTTGCGATTCATAGAGAGAAAAAATCTACCGCGATTTTCACATGGATCGAGATCGAGATGCTCTTTGTGTTCCTCCACTGCGATTGAGAGTATCCGCAGGTTCGTCAAAAACAAACAGCCACTGCGCCTTGCAAGTCTTGTGATGCAAAGCGGCGTATGTTGGGCGGTGGGAGAAGAGTGCAAGGTAGAAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.48

Weight (kDa)

9.93

Isoelectric Point (pI)

74.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccII CGCG 1 cut(s) 361
AciI CCGC 6 cut(s) 52, 197, 359, 424, 480, 494
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 2 cut(s) 66, 212
AcuI CTGAAG 1 cut(s) 294
AgsI TTSAA 6 cut(s) 40, 91, 124, 188, 237, 260
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 1 cut(s) 451
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 66, 212
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AspLEI GCGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 35
BceAI ACGGC 2 cut(s) 39, 184
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 4 cut(s) 49, 52, 197, 481
BlsI GCNGC 4 cut(s) 50, 53, 198, 482
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 377, 462
BsaBI GATNNNNATC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 82, 228
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 82, 228
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 379
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 374, 380
BspACI CCGC 6 cut(s) 52, 197, 359, 424, 480, 494
BspANI GGCC 1 cut(s) 196
BspFNI CGCG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 82, 228
BssMI GATC 2 cut(s) 374, 380
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 498, 513
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 82, 228
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 377, 383
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 374, 380
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 2 cut(s) 82, 228
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 405, 449
BtsIMutI CAGTG 2 cut(s) 405, 449
BveI ACCTGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 451
CfoI GCGC 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 149, 371
CviJI RGCY 8 cut(s) 48, 87, 196, 233, 250, 263, 298, 448
CviKI_1 RGCY 8 cut(s) 48, 87, 196, 233, 250, 263, 298, 448
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 376, 382
DpnII GATC 2 cut(s) 374, 380
Eam1104I CTCTTC 2 cut(s) 498, 513
EarI CTCTTC 2 cut(s) 498, 513
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 2 cut(s) 152, 374
FaiI YATR 6 cut(s) 150, 285, 341, 372, 487, 526
FatI CATG 2 cut(s) 148, 370
Fnu4HI GCNGC 4 cut(s) 49, 52, 197, 481
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 49, 52, 197, 481
GlaI GCGC 1 cut(s) 455
GluI GCNGC 4 cut(s) 49, 52, 197, 481
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 73
HhaI GCGC 1 cut(s) 456
Hin1II CATG 2 cut(s) 152, 374
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 302, 336
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 25, 111, 173
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 237, 378, 384
Hpy8I GTNNAC 3 cut(s) 25, 111, 173
HpyAV CCTTC 1 cut(s) 318
HpyCH4IV ACGT 4 cut(s) 27, 35, 175, 183
HpyCH4V TGCA 3 cut(s) 461, 475, 510
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 4 cut(s) 27, 35, 175, 183
Hsp92II CATG 2 cut(s) 152, 374
HspAI GCGC 1 cut(s) 454
Kzo9I GATC 2 cut(s) 374, 380
LpnPI CCDG 5 cut(s) 86, 232, 302, 329, 412
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 377, 462
MabI ACCWGGT 1 cut(s) 315
MaeII ACGT 4 cut(s) 27, 35, 175, 183
MalI GATC 2 cut(s) 376, 382
MboI GATC 2 cut(s) 374, 380
MboII GAAGA 4 cut(s) 16, 164, 338, 515
MluCI AATT 2 cut(s) 66, 212
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 4 cut(s) 38, 186, 288, 412
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 361
NdeII GATC 2 cut(s) 374, 380
NlaIII CATG 2 cut(s) 152, 374
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 4 cut(s) 50, 53, 198, 482
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 451
SatI GCNGC 4 cut(s) 49, 52, 197, 481
Sau3AI GATC 2 cut(s) 374, 380
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 317
SexAI ACCWGGT 1 cut(s) 315
SfaNI GCATC 2 cut(s) 377, 462
Sse9I AATT 2 cut(s) 66, 212
SsiI CCGC 6 cut(s) 52, 197, 359, 424, 480, 494
SspI AATATT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 315
TaiI ACGT 4 cut(s) 30, 38, 178, 186
TaqI TCGA 5 cut(s) 11, 159, 300, 377, 383
TasI AATT 2 cut(s) 66, 212
TauI GCSGC 3 cut(s) 54, 199, 483
TfiI GAWTC 1 cut(s) 336
TscAI CASTG 2 cut(s) 412, 456
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 4 cut(s) 17, 141, 165, 328
TspGWI ACGGA 2 cut(s) 57, 205
TspRI CASTG 2 cut(s) 412, 456
XapI RAATTY 2 cut(s) 66, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.