Rh5AG067200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000084
Physical Location & Seq
Reverse (-)
5643683 .. 5649992
6310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG067200.1

Sequence Viewer

Length: 1497 bp
ATGGTTATTGAGCCATTTGCAGAATACTATTCCAATGATGTTGATGCAAAGATCAGCTACTCCGGCAGCAAGAATTATCTAGCAAGACCTAGGGCAGTTATCCAAGACAAACTCAAGGAAAGAAGGAAATTAAGAAGTACTCGAAAGAGAAAACAAACGAGGAAGAGAAGATGTCGAATTGCCGATCTGCCGGATTGCATTCTGGAATTCATACTTTCATTGATACCTCTAAGAGACGCAGTAGAAACTAGCCTGGTTTGCCGTGATTGGAGGCCCTTTTTACTAAAACGGCGCAATCTGGTATTTGACTTCGAGGGGTATGTTAGGAGGCCGCCACAGTTTGAAAAACGTGTGGATACATATTTGCAGCTGTATAAAGGTGACAAGGTCGACTCTTTCACAGTGGAGTTCACTGATCAAGAAGGTGGCGACGTCCTTGACCGATGGATCCGTTTCGCAATTACAAAGGGAGTTGAAGAACTTCATCTTCGACATCACGTTTTTGATTATGTTTTCCCTCACTGGTTACTTTCTGAACAAGTAAACGCAGGCTCAAGAGTTAATCTAAAAGTTCTGTCAATATGTAGCATTGATGGTATTTTACGACCTCCTCCTGATTTTAGCGGATTCAATCAGCTAAAGACTCTTCATCTAATTCATGCTATCATCGATCCAAGTTTTACGTCAAATCTCTTTTCTGTCTTTGTGTCCCTCGAAAGCTTGACCTTATATCGCTGCAGGCTTGGTCGATATCTTGCTAATACTAGAACTGATCTGAATATTGTTGCCGGTGATCGTCTAACTGAACTGATAGTCATGGATTGCGGCCCAGCCAAAATCAAAATTTCTGCACAAAATCTCGCCTCCTTGGAATATATTAATAATCATTGGACCTCTCTTTCTATCAAAACTCCGCGTTTAGCAAGAATTTATTTGCCAGACACTGTTCACGATCCATTGTTACCTCATGTTCTAACACAATTTGCGACGTGTTCTGAGCTCGACTCTCTTTTTCTGCGGATGTACCCGGAAACCCTAATCAATTTCAGCATGCCAGCTTTTGGAAATTTGAGGAAATTGAAGGTGGATATCTGCATCGAATATGGTCGTCCATACAATGATGACAATCTTCTTCGCTTTCTGGATTTTCTCAAGGCTGCACCCGTTTTGGAAGAGCTTGTAACAGCTTTGATTGACCTCAAGTTTACTGACACTACTGATGAACGAGAGATAAGGAATGTTTCTGGATTTACACATGATAACTTGAAATTAGTTAAGATGAAGAGTTTCCACGGTCACTGGTCCGAAATAGAGTTTGCGATTTGTATTCTCAAGTACACAACAAATCTCAAGATAATGGAAATTGGGCCTTTCGCAAGAAGCGTTTCTGGTGACTACTTTCGGGAGAAGGTGAATTATCCAGAACGACCTAGGGCAATTATGAAAGAAAAAATCAAGGAAGTAAAGACCGATGCTCAAATTATATTTCTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

498

Amino Acids

57.92

Weight (kDa)

9.0

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 139 - 489 1.2e-28 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 146 - 250 7.6e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 1061
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 916
AciI CCGC 5 cut(s) 332, 624, 825, 914, 1018
AclWI GGATC 4 cut(s) 442, 455, 665, 947
AcsI RAATTY 4 cut(s) 206, 843, 927, 1066
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 3 cut(s) 139, 1025, 1337
AfiI CCNNNNNNNGG 1 cut(s) 1061
AflIII ACRYGT 2 cut(s) 349, 989
AgsI TTSAA 5 cut(s) 344, 476, 631, 1081, 1267
AjiI CACGTC 1 cut(s) 990
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 8 cut(s) 57, 370, 637, 720, 1000, 1058, 1177, 1187
AluI AGCT 8 cut(s) 57, 370, 637, 720, 1000, 1058, 1177, 1187
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 4 cut(s) 442, 455, 665, 947
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 4 cut(s) 272, 329, 826, 1367
ApeKI GCWGC 4 cut(s) 66, 367, 735, 1157
ApoI RAATTY 4 cut(s) 206, 843, 927, 1066
AseI ATTAAT 1 cut(s) 879
Asp700I GAANNNNTTC 3 cut(s) 480, 1286, 1384
AspA2I CCTAGG 2 cut(s) 89, 1430
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 5 cut(s) 273, 827, 891, 1302, 1367
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 4 cut(s) 392, 803, 1403, 1423
AvaII GGWCC 2 cut(s) 891, 1302
AvrII CCTAGG 2 cut(s) 89, 1430
BamHI GGATCC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 1002
Bbv12I GWGCWC 1 cut(s) 1002
BbvI GCAGC 4 cut(s) 78, 379, 722, 1144
BccI CCATC 2 cut(s) 438, 587
BceAI ACGGC 2 cut(s) 246, 305
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 349
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 5 cut(s) 80, 90, 249, 765, 1431
BfmI CTRYAG 1 cut(s) 736
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 6 cut(s) 67, 332, 368, 736, 826, 1158
BlnI CCTAGG 2 cut(s) 89, 1430
BlsI GCNGC 6 cut(s) 68, 333, 369, 737, 827, 1159
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 254, 1028
Bme18I GGWCC 2 cut(s) 891, 1302
BmgBI CACGTC 1 cut(s) 990
BmgT120I GGNCC 5 cut(s) 273, 827, 891, 1302, 1367
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 2 cut(s) 254, 1028
BmsI GCATC 3 cut(s) 34, 1104, 1462
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
BpuEI CTTGAG 6 cut(s) 98, 538, 1136, 1184, 1316, 1334
BpuMI CCSGG 1 cut(s) 1028
Bsa29I ATCGAT 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 89, 867, 1291, 1430
Bsc4I CCNNNNNNNGG 1 cut(s) 1061
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 2 cut(s) 527, 1304
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 4 cut(s) 89, 867, 1291, 1430
BseGI GGATG 1 cut(s) 1026
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 1 cut(s) 1061
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 2 cut(s) 527, 1304
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 4 cut(s) 78, 379, 722, 1144
BseYI CCCAGC 1 cut(s) 829
BsgI GTGCAG 2 cut(s) 834, 1143
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 4 cut(s) 274, 331, 828, 1369
BshVI ATCGAT 1 cut(s) 669
BsiHKAI GWGCWC 1 cut(s) 1002
BsiSI CCGG 4 cut(s) 63, 191, 789, 1028
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 1 cut(s) 1061
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 4 cut(s) 274, 331, 828, 1369
Bsp1286I GDGCHC 1 cut(s) 1002
Bsp143I GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
BspACI CCGC 5 cut(s) 332, 624, 825, 914, 1018
BspANI GGCC 4 cut(s) 274, 331, 828, 1369
BspCNI CTCAG 1 cut(s) 988
BspDI ATCGAT 1 cut(s) 669
BspFNI CGCG 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 449
BspMAI CTGCAG 1 cut(s) 740
BspPI GGATC 4 cut(s) 442, 455, 665, 947
BspQI GCTCTTC 1 cut(s) 1167
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 2 cut(s) 527, 1304
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 4 cut(s) 89, 867, 1291, 1430
BssMI GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 3 cut(s) 89, 867, 1430
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 339, 403, 946, 1295
Bst6I CTCTTC 4 cut(s) 158, 651, 1167, 1277
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 4 cut(s) 550, 740, 1052, 1056
BstDEI CTNAG 2 cut(s) 230, 996
BstDSI CCRYGG 1 cut(s) 1291
BstF5I GGATG 1 cut(s) 1026
BstFNI CGCG 1 cut(s) 916
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 8 cut(s) 54, 187, 418, 450, 673, 775, 796, 955
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
BstMWI GCNNNNNNNGC 2 cut(s) 63, 258
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 252, 1026
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 4 cut(s) 78, 379, 722, 1144
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 669
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 4 cut(s) 274, 331, 828, 1369
BsuTUI ATCGAT 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 1291
BtrI CACGTC 1 cut(s) 990
BtsCI GGATG 1 cut(s) 1026
BtsIMutI CAGTG 5 cut(s) 408, 411, 520, 942, 1297
Cac8I GCNNGC 4 cut(s) 550, 740, 1052, 1056
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 5 cut(s) 273, 827, 891, 1302, 1367
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 245
Csp6I GTAC 3 cut(s) 138, 1024, 1336
CviAII CATG 5 cut(s) 659, 817, 968, 1051, 1256
CviQI GTAC 3 cut(s) 138, 1024, 1336
DdeI CTNAG 2 cut(s) 230, 996
DpnI GATC 8 cut(s) 53, 186, 417, 449, 672, 774, 795, 954
DpnII GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
Eam1104I CTCTTC 4 cut(s) 158, 651, 1167, 1277
EarI CTCTTC 4 cut(s) 158, 651, 1167, 1277
Ecl136II GAGCTC 1 cut(s) 1000
Eco130I CCWWGG 3 cut(s) 89, 867, 1430
Eco24I GRGCYC 1 cut(s) 1002
Eco32I GATATC 2 cut(s) 752, 1090
Eco47I GGWCC 2 cut(s) 891, 1302
Eco53kI GAGCTC 1 cut(s) 1000
EcoICRI GAGCTC 1 cut(s) 1000
EcoO109I RGGNCCY 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 252
EcoRV GATATC 2 cut(s) 752, 1090
EcoT14I CCWWGG 3 cut(s) 89, 867, 1430
EcoT38I GRGCYC 1 cut(s) 1002
ErhI CCWWGG 3 cut(s) 89, 867, 1430
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 5 cut(s) 662, 820, 971, 1054, 1259
FaqI GGGAC 1 cut(s) 694
FatI CATG 5 cut(s) 658, 816, 967, 1050, 1255
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 6 cut(s) 67, 332, 368, 736, 826, 1158
FokI GGATG 1 cut(s) 1033
FriOI GRGCYC 1 cut(s) 1002
Fsp4HI GCNGC 6 cut(s) 67, 332, 368, 736, 826, 1158
FspBI CTAG 5 cut(s) 80, 90, 249, 765, 1431
GlaI GCGC 1 cut(s) 293
GluI GCNGC 6 cut(s) 67, 332, 368, 736, 826, 1158
GsaI CCCAGC 1 cut(s) 833
HaeIII GGCC 4 cut(s) 274, 331, 828, 1369
HapII CCGG 4 cut(s) 63, 191, 789, 1028
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 5 cut(s) 662, 820, 971, 1054, 1259
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 4 cut(s) 392, 627, 643, 1004
HpaII CCGG 4 cut(s) 63, 191, 789, 1028
HphI GGTGA 4 cut(s) 392, 803, 1403, 1423
Hpy166II GTNNAC 6 cut(s) 391, 411, 544, 949, 1206, 1338
Hpy188I TCNGA 4 cut(s) 535, 777, 997, 1306
Hpy8I GTNNAC 6 cut(s) 391, 411, 544, 949, 1206, 1338
Hpy99I CGWCG 2 cut(s) 434, 991
HpyAV CCTTC 4 cut(s) 117, 416, 1075, 1402
HpyCH4III ACNGT 4 cut(s) 339, 403, 946, 1295
HpyCH4IV ACGT 5 cut(s) 349, 432, 498, 683, 989
HpyCH4V TGCA 8 cut(s) 20, 47, 198, 367, 738, 851, 1095, 1160
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 258
HpyF3I CTNAG 2 cut(s) 230, 996
HpySE526I ACGT 5 cut(s) 349, 432, 498, 683, 989
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 5 cut(s) 662, 820, 971, 1054, 1259
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
LguI GCTCTTC 1 cut(s) 1167
Lsp1109I GCAGC 4 cut(s) 78, 379, 722, 1144
LweI GCATC 3 cut(s) 34, 1104, 1462
MaeI CTAG 5 cut(s) 80, 90, 249, 765, 1431
MaeII ACGT 5 cut(s) 349, 432, 498, 683, 989
MaeIII GTNAC 6 cut(s) 380, 525, 960, 1180, 1295, 1391
MalI GATC 8 cut(s) 53, 186, 417, 449, 672, 774, 795, 954
MboI GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
MboII GAAGA 9 cut(s) 175, 180, 479, 488, 638, 1121, 1124, 1184, 1294
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 1002
MlyI GAGTC 3 cut(s) 386, 637, 998
MroXI GAANNNNTTC 3 cut(s) 480, 1286, 1384
MseI TTAA 4 cut(s) 131, 561, 879, 1275
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 4 cut(s) 63, 191, 789, 1028
MspR9I CCNGG 2 cut(s) 254, 1028
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 2 cut(s) 63, 258
NciI CCSGG 1 cut(s) 1028
NdeII GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
NlaIII CATG 5 cut(s) 662, 820, 971, 1054, 1259
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 3 cut(s) 380, 1295, 1391
NspI RCATGY 1 cut(s) 1054
PaeI GCATGC 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 1380
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 3 cut(s) 480, 1286, 1384
PfeI GAWTC 1 cut(s) 627
PflFI GACNNNGTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 1061
PkrI GCNGC 6 cut(s) 68, 333, 369, 737, 827, 1159
PleI GAGTC 3 cut(s) 386, 637, 998
PpsI GAGTC 3 cut(s) 386, 637, 998
PshBI ATTAAT 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 5 cut(s) 273, 827, 891, 1302, 1367
PstI CTGCAG 1 cut(s) 740
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 1 cut(s) 447
PsyI GACNNNGTC 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 139, 1025, 1337
RsaNI GTAC 3 cut(s) 138, 1024, 1336
SacI GAGCTC 1 cut(s) 1002
SalI GTCGAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 131, 561, 879, 1275
SatI GCNGC 6 cut(s) 67, 332, 368, 736, 826, 1158
Sau3AI GATC 8 cut(s) 51, 184, 415, 447, 670, 772, 793, 952
Sau96I GGNCC 5 cut(s) 273, 827, 891, 1302, 1367
ScaI AGTACT 1 cut(s) 139
SchI GAGTC 3 cut(s) 386, 637, 998
ScrFI CCNGG 2 cut(s) 254, 1028
SduI GDGCHC 1 cut(s) 1002
SfaNI GCATC 3 cut(s) 34, 1104, 1462
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 2 cut(s) 891, 1302
SmlI CTYRAG 6 cut(s) 113, 553, 1151, 1199, 1331, 1349
SmoI CTYRAG 6 cut(s) 113, 553, 1151, 1199, 1331, 1349
SphI GCATGC 1 cut(s) 1054
SsiI CCGC 5 cut(s) 332, 624, 825, 914, 1018
SspI AATATT 1 cut(s) 781
SspMI CTAG 5 cut(s) 80, 90, 249, 765, 1431
SstI GAGCTC 1 cut(s) 1002
StyD4I CCNGG 2 cut(s) 252, 1026
StyI CCWWGG 3 cut(s) 89, 867, 1430
TaaI ACNGT 4 cut(s) 339, 403, 946, 1295
TaiI ACGT 5 cut(s) 352, 435, 501, 686, 992
TaqII GACCGA 2 cut(s) 456, 1484
TatI WGTACW 2 cut(s) 137, 1335
TauI GCSGC 2 cut(s) 334, 828
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 4 cut(s) 131, 561, 879, 1275
Tru9I TTAA 4 cut(s) 131, 561, 879, 1275
TscAI CASTG 5 cut(s) 408, 418, 527, 949, 1304
TseFI GTSAC 3 cut(s) 380, 1295, 1391
TseI GCWGC 4 cut(s) 66, 367, 735, 1157
Tsp45I GTSAC 3 cut(s) 380, 1295, 1391
TspDTI ATGAA 8 cut(s) 199, 207, 473, 638, 647, 1236, 1295, 1457
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 5 cut(s) 408, 418, 527, 949, 1304
Tth111I GACNNNGTC 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 891, 1302
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 4 cut(s) 206, 843, 927, 1066
XceI RCATGY 1 cut(s) 1054
XmaJI CCTAGG 2 cut(s) 89, 1430
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 3 cut(s) 480, 1286, 1384
XspI CTAG 5 cut(s) 80, 90, 249, 765, 1431
ZraI GACGTC 1 cut(s) 433
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.