Rh2AG534000

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000084
Physical Location & Seq
Forward (+)
76299877 .. 76304017
4141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG534000.1

Sequence Viewer

Length: 2259 bp
ATGGATGGATCGTATGAACCTTCAATATCTTATATTGGTTTGGTGTCCCAAAGTTCGATAAATGGAAGTGACTGTAATGAAATGCAATATAAGGGAGTTCGGTATGATAAGTTGTCTACAGAAGATCTTAAAGGGCAGGAGTTTAAGACTGTGGAGGAAGCTGAGTCCTTTTACAATGCTTATGCAAAGGCCATGGGTTTTGATGTTAGAAGCGACTACAAGAGATTAAGTATACGCATAACAGGGAGAGTCACTTCATTGCGGTTGGTTTGTTCTGCTCAAGGGAAAAGAAGAGAAGAGTACATGAGTAACAAGAAAAGAGTTCGCAAGCCAAAGAAAGAAACAAGATTCAATTGTCCATGCTTGTTCAAAGTAAGGTACCGTTCGAATATTAATGCCTATATTGTTGATGATTTCATAACGATCCACTCACATCAGCTTGCACAAGCACATGAGTCGCATCTTCTTCGATCACACAGATCGATTGAAGATCATCATTTAGCACTGGCCACATCTATGCAGAGAGTGTCTGTTAAGCCTTGTCATACATATGAATACATTGTTGATAGATCAGGAGGTTTTAAGAATGTCGGGTTTATTATGAAGGACTTGTACAACAAGTTAGATTCAAGACGCCGAGAAATTTTACTTGAGGGTGATGCAGAAGCTGCACTTGCATATATGAGAGGCAAAGTTGCCACAGACTCGCATTTCTACTGCAAGTTTAGCATAGATGAAGATAACAGGTTGGCGAATATGTTTTGGAGAGACTCTAATTCTCTGGTGGATTATACTTGTTTTGGAGATGTCTTGGTGTTTGATAGTACCTACAAAACCAATCCTTATGAGAAGCCGTTAGTATTGTTTGTTGGTTCAAACAATCATCTATCGACCACAGTTTTTGGTTTTGCATTACTCATGGATGAAACGATTGAGACTTACACATGGGTTTTGGAGACCTTTATATCGTCTATGAATAACAAAAGGCCTGTTGCTGTTTTGACTGATGGGGATGAAGCAATGCGAAGGGCTATTGAAGTGGTACTCCCTGGTTGTCCTCATCGTCTGTGTACGTGGCACATAGCAAAGAACGCCCGGAGGCACCTGCGTAAGAACAGTGTCTTTTCTGAATTTAGATGTTGTATGTGGGATGAAGTCACTCCAGATGGTTTTGAAAAACGCTGGAATGCTATGGTTAACACACATGCTCTCCACAATAAGGATTGGGTTAAGATGATGTATGAAAAGAGGCAAATATGGGCAGAGGCATTTATTAGTGGCCATTTTTTTGCCCGTATGAGAAGCACTCAGAGATGTGAGGGTATGAACAGCTATATGAAGGGCTATCTGAAAAGCGGTGTGAAATTATTTGAACTTATTCCGGCACTTGATAGGGCATTGTTACGGCTTAGGAACAAGGTTGTGGAAGAGGATTTTAAGTCCAATAACTCTAGTCATGTCCTTACTTCTTCACTTCGAAAATTAGAAGATCATGCAGGTACTATGTTCACTGATAGTATGTTTGAGCATGTACGTAACGAGATTGATGGGGTCGGCGATTTAATAACATCTCGAACTATGGTGTTTGGTTCAAGTCGTGTATACTTTACATCTAGTTACAATGACATCATATCTGGATGTGTGTTGTTCTTCCAACTATATTATTATAATGTCATCGGATATGGAAGGGCACTTGTTGATTGTGAGACGCCTTCAATTGCAGCTTGGGGAGAGGAGCAATCAGCAAAATTAATTAAATGGATATTGCGTAAAGGGGGTCATGAAAGTCCAAACATTCTGGTTTCCAAAGTTTATAATTCAAGTGAACAGAAACATGAGGCAGAAAATGTTGTTGCCCTTCGAGCTGATGTTGAATCCGTGAAGAGTACCATTATGCGTGTGGAGGAAAAGATTGATGAATTTGGAGGTCTTCTTAGAGGGATACAAGAAGGATTGTTCAAAGTAGTGAGACAAGATGGTGATCAGGATGTCAATATAAAAAGGGACGAGGCTAATGATGAAAGAAAGACTGTGGATCTGTCAGCAAATGATACTATTAGGCAAAAAGTTATATGCAAGAAACGTGGACCAAACACAATGAAGATAGATCAAGACATCACAGCACGCAGCGATACTGATGAAGGTTTGCAAAGGTCTCCAAAGAAAATGAAGGCAATCCACGAAAAAGATGCAGCCAATGTGAACAAGAAAAAAGGTCCTGGTCGGCCTCGTGGATCAAAGAATAAACCTAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

752

Amino Acids

86.4

Weight (kDa)

9.02

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 56 - 148 7.3e-15 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 241 - 350 2.1e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 270 - 364 5.6e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1668, 1815
AarI CACCTGC 1 cut(s) 1113
Acc36I ACCTGC 2 cut(s) 1113, 1487
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 378, 1101
AccI GTMKAC 3 cut(s) 116, 232, 1602
AciI CCGC 2 cut(s) 262, 1356
AclWI GGATC 4 cut(s) 16, 418, 2043, 2242
AcoI YGGCCR 2 cut(s) 507, 1279
AcsI RAATTY 3 cut(s) 642, 1130, 1919
AcyI GRCGYC 2 cut(s) 634, 1709
AfaI GTAC 9 cut(s) 302, 380, 614, 826, 1044, 1072, 1501, 1533, 1888
AfiI CCNNNNNNNGG 1 cut(s) 1219
AjnI CCWGG 2 cut(s) 1048, 2218
AluBI AGCT 6 cut(s) 161, 439, 668, 1332, 1724, 1865
AluI AGCT 6 cut(s) 161, 439, 668, 1332, 1724, 1865
Alw26I GTCTC 6 cut(s) 762, 929, 950, 1700, 1963, 2160
AlwI GGATC 4 cut(s) 16, 418, 2043, 2242
AlwNI CAGNNNCTG 1 cut(s) 668
AoxI GGCC 5 cut(s) 189, 507, 986, 1279, 2225
ApeKI GCWGC 4 cut(s) 668, 1721, 2127, 2192
ApoI RAATTY 3 cut(s) 642, 1130, 1919
AseI ATTAAT 2 cut(s) 393, 1751
Asp700I GAANNNNTTC 1 cut(s) 1377
Asp718I GGTACC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 2087, 2216
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 2 cut(s) 668, 1991
AsuII TTCGAA 2 cut(s) 386, 1477
AvaII GGWCC 2 cut(s) 2087, 2216
BaeGI GKGCMC 1 cut(s) 1693
BalI TGGCCA 2 cut(s) 509, 1281
BanI GGYRCC 2 cut(s) 378, 1101
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
BauI CACGAG 1 cut(s) 2229
BbsI GAAGAC 1 cut(s) 1922
BbvI GCAGC 4 cut(s) 655, 1733, 2139, 2204
BccI CCATC 4 cut(s) 1001, 1160, 1541, 1970
BceAI ACGGC 2 cut(s) 838, 1421
BcgI CGANNNNNNTGC 6 cut(s) 438, 449, 472, 483, 2171, 2205
BciT130I CCWGG 2 cut(s) 1050, 2220
BciVI GTATCC 1 cut(s) 1935
BclI TGATCA 1 cut(s) 1981
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 6 cut(s) 762, 929, 950, 1700, 1963, 2160
BfaI CTAG 2 cut(s) 1452, 1614
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 2 cut(s) 1113, 1487
BfuI GTATCC 1 cut(s) 1935
BglII AGATCT 1 cut(s) 124
BisI GCNGC 4 cut(s) 669, 1722, 2128, 2193
BlsI GCNGC 4 cut(s) 670, 1723, 2129, 2194
Bme1390I CCNGG 3 cut(s) 1050, 1096, 2220
Bme18I GGWCC 2 cut(s) 2087, 2216
BmgT120I GGNCC 2 cut(s) 2087, 2216
BmiI GGNNCC 2 cut(s) 380, 1103
BmrFI CCNGG 3 cut(s) 1050, 1096, 2220
BmsI GCATC 3 cut(s) 469, 649, 2179
BpiI GAAGAC 1 cut(s) 1922
BplI GAGNNNNNCTC 2 cut(s) 1291, 1323
BpmI CTGGAG 1 cut(s) 1146
Bpu10I CCTNAGC 1 cut(s) 1409
Bpu14I TTCGAA 2 cut(s) 386, 1477
BpuEI CTTGAG 2 cut(s) 264, 671
BpuMI CCSGG 1 cut(s) 1096
Bsa29I ATCGAT 1 cut(s) 482
BsaAI YACGTR 2 cut(s) 1074, 1535
BsaBI GATNNNNATC 1 cut(s) 1980
BsaHI GRCGYC 2 cut(s) 634, 1709
BsaI GGTCTC 2 cut(s) 950, 2160
BsaJI CCNNGG 2 cut(s) 192, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1194, 1224
Bsc4I CCNNNNNNNGG 1 cut(s) 1219
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 2 cut(s) 257, 1026
Bse8I GATNNNNATC 1 cut(s) 1980
BseBI CCWGG 2 cut(s) 1050, 2220
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 192, 1048
BseGI GGATG 6 cut(s) 10, 928, 1018, 1156, 1643, 1993
BseJI GATNNNNATC 1 cut(s) 1980
BseLI CCNNNNNNNGG 1 cut(s) 1219
BseMI GCAATG 2 cut(s) 257, 1026
BseMII CTCAG 2 cut(s) 153, 1322
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 1748
BseSI GKGCMC 1 cut(s) 1693
BseXI GCAGC 4 cut(s) 655, 1733, 2139, 2204
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 5 cut(s) 191, 509, 988, 1281, 2227
BshNI GGYRCC 2 cut(s) 378, 1101
BshVI ATCGAT 1 cut(s) 482
BsiSI CCGG 2 cut(s) 1096, 1382
BslFI GGGAC 2 cut(s) 31, 2018
BslI CCNNNNNNNGG 1 cut(s) 1219
BsmAI GTCTC 6 cut(s) 762, 929, 950, 1700, 1963, 2160
BsmBI CGTCTC 1 cut(s) 1700
BsmFI GGGAC 2 cut(s) 31, 2018
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 5 cut(s) 191, 509, 988, 1281, 2227
Bso31I GGTCTC 2 cut(s) 950, 2160
Bsp119I TTCGAA 2 cut(s) 386, 1477
Bsp1286I GDGCHC 1 cut(s) 1693
Bsp1407I TGTACA 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 2 cut(s) 262, 1356
BspANI GGCC 5 cut(s) 191, 509, 988, 1281, 2227
BspCNI CTCAG 2 cut(s) 154, 1321
BspDI ATCGAT 1 cut(s) 482
BspHI TCATGA 1 cut(s) 1780
BspLI GGNNCC 2 cut(s) 380, 1103
BspMI ACCTGC 2 cut(s) 1113, 1487
BspPI GGATC 4 cut(s) 16, 418, 2043, 2242
BspT104I TTCGAA 2 cut(s) 386, 1477
BspT107I GGYRCC 2 cut(s) 378, 1101
BspTNI GGTCTC 2 cut(s) 950, 2160
BsrDI GCAATG 2 cut(s) 257, 1026
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 2 cut(s) 192, 1048
BssNAI GTATAC 2 cut(s) 233, 1603
BssNI GRCGYC 2 cut(s) 634, 1709
BssSI CACGAG 1 cut(s) 2229
BssT1I CCWWGG 1 cut(s) 192
Bst1107I GTATAC 2 cut(s) 233, 1603
Bst2BI CACGAG 1 cut(s) 2229
Bst2UI CCWGG 2 cut(s) 1050, 2220
Bst4CI ACNGT 6 cut(s) 74, 151, 383, 898, 1118, 2032
Bst6I CTCTTC 4 cut(s) 286, 291, 1422, 1877
BstACI GRCGYC 2 cut(s) 634, 1709
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 2 cut(s) 1074, 1535
BstBI TTCGAA 2 cut(s) 386, 1477
BstC8I GCNNGC 3 cut(s) 329, 441, 2125
BstDEI CTNAG 5 cut(s) 162, 1308, 1409, 1934, 2250
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 6 cut(s) 10, 928, 1018, 1156, 1643, 1993
BstMAI GTCTC 6 cut(s) 762, 929, 950, 1700, 1963, 2160
BstMWI GCNNNNNNNGC 5 cut(s) 668, 674, 726, 1091, 1862
BstNI CCWGG 2 cut(s) 1050, 2220
BstNSI RCATGY 2 cut(s) 1208, 1532
BstSCI CCNGG 3 cut(s) 1048, 1094, 2218
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 1693
BstSNI TACGTA 1 cut(s) 1535
BstV1I GCAGC 4 cut(s) 655, 1733, 2139, 2204
BstV2I GAAGAC 1 cut(s) 1922
BstX2I RGATCY 2 cut(s) 124, 2035
BstYI RGATCY 2 cut(s) 124, 2035
BstZ17I GTATAC 2 cut(s) 233, 1603
Bsu15I ATCGAT 1 cut(s) 482
BsuI GTATCC 1 cut(s) 1935
BsuRI GGCC 5 cut(s) 191, 509, 988, 1281, 2227
BsuTUI ATCGAT 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 6 cut(s) 10, 928, 1018, 1156, 1643, 1993
BtsIMutI CAGTG 3 cut(s) 503, 1123, 1509
BveI ACCTGC 2 cut(s) 1113, 1487
Cac8I GCNNGC 3 cut(s) 329, 441, 2125
CaiI CAGNNNCTG 1 cut(s) 668
CciI TCATGA 1 cut(s) 1780
Cfr13I GGNCC 2 cut(s) 2087, 2216
ClaI ATCGAT 1 cut(s) 482
CseI GACGC 2 cut(s) 642, 1717
Csp6I GTAC 9 cut(s) 301, 379, 613, 825, 1043, 1071, 1500, 1532, 1887
CspCI CAANNNNNGTGG 4 cut(s) 883, 918, 2065, 2100
CviQI GTAC 9 cut(s) 301, 379, 613, 825, 1043, 1071, 1500, 1532, 1887
DdeI CTNAG 5 cut(s) 162, 1308, 1409, 1934, 2250
EaeI YGGCCR 2 cut(s) 507, 1279
Eam1104I CTCTTC 4 cut(s) 286, 291, 1422, 1877
EarI CTCTTC 4 cut(s) 286, 291, 1422, 1877
Eco105I TACGTA 1 cut(s) 1535
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 988
Eco31I GGTCTC 2 cut(s) 950, 2160
Eco47I GGWCC 2 cut(s) 2087, 2216
EcoO109I RGGNCCY 1 cut(s) 2216
EcoRII CCWGG 2 cut(s) 1048, 2218
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 1700
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 2 cut(s) 31, 2018
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 1981
FblI GTMKAC 3 cut(s) 116, 232, 1602
Fnu4HI GCNGC 4 cut(s) 669, 1722, 2128, 2193
FokI GGATG 6 cut(s) 17, 935, 1025, 1163, 1650, 2000
Fsp4HI GCNGC 4 cut(s) 669, 1722, 2128, 2193
FspBI CTAG 2 cut(s) 1452, 1614
GluI GCNGC 4 cut(s) 669, 1722, 2128, 2193
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 5 cut(s) 191, 509, 988, 1281, 2227
HapII CCGG 2 cut(s) 1096, 1382
HgaI GACGC 2 cut(s) 642, 1717
Hin1I GRCGYC 2 cut(s) 634, 1709
HincII GTYRAC 1 cut(s) 1198
HindII GTYRAC 1 cut(s) 1198
HinfI GANTC 8 cut(s) 164, 249, 348, 455, 626, 704, 770, 1874
HpaI GTTAAC 1 cut(s) 1198
HpaII CCGG 2 cut(s) 1096, 1382
HphI GGTGA 2 cut(s) 668, 1991
Hpy166II GTNNAC 9 cut(s) 117, 233, 1071, 1198, 1509, 1603, 1826, 2087, 2203
Hpy188I TCNGA 4 cut(s) 1129, 1311, 1350, 1679
Hpy188III TCNNGA 8 cut(s) 573, 630, 1163, 1572, 1635, 1781, 1985, 2111
Hpy8I GTNNAC 9 cut(s) 117, 233, 1071, 1198, 1509, 1603, 1826, 2087, 2203
HpyCH4III ACNGT 6 cut(s) 74, 151, 383, 898, 1118, 2032
HpyCH4IV ACGT 3 cut(s) 1073, 1534, 2083
HpyF10VI GCNNNNNNNGC 5 cut(s) 668, 674, 726, 1091, 1862
HpyF3I CTNAG 5 cut(s) 162, 1308, 1409, 1934, 2250
HpySE526I ACGT 3 cut(s) 1073, 1534, 2083
Hsp92I GRCGYC 2 cut(s) 634, 1709
KpnI GGTACC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 1981
KspAI GTTAAC 1 cut(s) 1198
LmnI GCTCC 1 cut(s) 1735
Lsp1109I GCAGC 4 cut(s) 655, 1733, 2139, 2204
LweI GCATC 3 cut(s) 469, 649, 2179
MaeI CTAG 2 cut(s) 1452, 1614
MaeII ACGT 3 cut(s) 1073, 1534, 2083
MaeIII GTNAC 7 cut(s) 68, 250, 308, 1156, 1401, 1535, 1616
MfeI CAATTG 2 cut(s) 352, 1716
MflI RGATCY 2 cut(s) 124, 2035
MhlI GDGCHC 1 cut(s) 1693
MlsI TGGCCA 2 cut(s) 509, 1281
MluNI TGGCCA 2 cut(s) 509, 1281
MlyI GAGTC 5 cut(s) 173, 258, 464, 698, 764
MmeI TCCRAC 1 cut(s) 1678
Mox20I TGGCCA 2 cut(s) 509, 1281
MroXI GAANNNNTTC 1 cut(s) 1377
MscI TGGCCA 2 cut(s) 509, 1281
MslI CAYNNNNRTG 2 cut(s) 515, 549
Msp20I TGGCCA 2 cut(s) 509, 1281
MspI CCGG 2 cut(s) 1096, 1382
MspR9I CCNGG 3 cut(s) 1050, 1096, 2220
MunI CAATTG 2 cut(s) 352, 1716
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 2 cut(s) 1050, 2220
MwoI GCNNNNNNNGC 5 cut(s) 668, 674, 726, 1091, 1862
NciI CCSGG 1 cut(s) 1096
NcoI CCATGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 380, 1103
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 3 cut(s) 68, 250, 1156
NspI RCATGY 2 cut(s) 1208, 1532
NspV TTCGAA 2 cut(s) 386, 1477
PacI TTAATTAA 1 cut(s) 1755
PagI TCATGA 1 cut(s) 1780
PaqCI CACCTGC 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 988
PctI GAATGC 1 cut(s) 1192
PdmI GAANNNNTTC 1 cut(s) 1377
PfeI GAWTC 3 cut(s) 348, 626, 1874
PkrI GCNGC 4 cut(s) 670, 1723, 2129, 2194
PleI GAGTC 5 cut(s) 172, 257, 463, 698, 764
PpsI GAGTC 5 cut(s) 172, 257, 463, 698, 764
Ppu21I YACGTR 2 cut(s) 1074, 1535
PpuMI RGGWCCY 1 cut(s) 2216
PshBI ATTAAT 2 cut(s) 393, 1751
PsiI TTATAA 2 cut(s) 1668, 1815
Psp5II RGGWCCY 1 cut(s) 2216
Psp6I CCWGG 2 cut(s) 1048, 2218
PspGI CCWGG 2 cut(s) 1048, 2218
PspN4I GGNNCC 2 cut(s) 380, 1103
PspPI GGNCC 2 cut(s) 2087, 2216
PspPPI RGGWCCY 1 cut(s) 2216
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 2 cut(s) 124, 2035
RsaI GTAC 9 cut(s) 302, 380, 614, 826, 1044, 1072, 1501, 1533, 1888
RsaNI GTAC 9 cut(s) 301, 379, 613, 825, 1043, 1071, 1500, 1532, 1887
RseI CAYNNNNRTG 2 cut(s) 515, 549
SatI GCNGC 4 cut(s) 669, 1722, 2128, 2193
Sau96I GGNCC 2 cut(s) 2087, 2216
SchI GAGTC 5 cut(s) 173, 258, 464, 698, 764
ScrFI CCNGG 3 cut(s) 1050, 1096, 2220
SduI GDGCHC 1 cut(s) 1693
SfaNI GCATC 3 cut(s) 469, 649, 2179
SfcI CTRYAG 1 cut(s) 117
SfuI TTCGAA 2 cut(s) 386, 1477
SinI GGWCC 2 cut(s) 2087, 2216
SmiMI CAYNNNNRTG 2 cut(s) 515, 549
SmlI CTYRAG 2 cut(s) 279, 650
SmoI CTYRAG 2 cut(s) 279, 650
SnaBI TACGTA 1 cut(s) 1535
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 2 cut(s) 262, 1356
SspI AATATT 1 cut(s) 391
SspMI CTAG 2 cut(s) 1452, 1614
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 3 cut(s) 1048, 1094, 2218
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 6 cut(s) 74, 151, 383, 898, 1118, 2032
TaiI ACGT 3 cut(s) 1076, 1537, 2086
TaqI TCGA 8 cut(s) 56, 386, 469, 482, 890, 1477, 1573, 1861
TatI WGTACW 2 cut(s) 300, 612
TfiI GAWTC 3 cut(s) 348, 626, 1874
TscAI CASTG 3 cut(s) 510, 1123, 1516
TseFI GTSAC 3 cut(s) 68, 250, 1156
TseI GCWGC 4 cut(s) 668, 1721, 2127, 2192
Tsp45I GTSAC 3 cut(s) 68, 250, 1156
TspGWI ACGGA 1 cut(s) 1867
TspRI CASTG 3 cut(s) 510, 1123, 1516
VpaK11BI GGWCC 2 cut(s) 2087, 2216
VspI ATTAAT 2 cut(s) 393, 1751
XapI RAATTY 3 cut(s) 642, 1130, 1919
XceI RCATGY 2 cut(s) 1208, 1532
XcmI CCANNNNNNNNNTGG 1 cut(s) 1897
XmiI GTMKAC 3 cut(s) 116, 232, 1602
XmnI GAANNNNTTC 1 cut(s) 1377
XspI CTAG 2 cut(s) 1452, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.