Rw2G049920

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000084
Physical Location & Seq
Reverse (-)
77489584 .. 77490396
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049920.1

Sequence Viewer

Length: 813 bp
ATGAAAACTCCACAGCTTGTAAGATTCTTTTTTAGGGGATTCAGTGGTATCCATGGATTACCTTATGCGTTCACCCTACTCGCCTTGTGTCCTTCCCTTGAGACTCTTCATCTGCAGTCGTTTACTGAACTGGAAAATATACCAGAAACACTTCCAACATTTTCAAAGCTCAAGCATGTGAGCTTGGATCTCTTTAATTCAGATTTTGACCTTGGGAGTGTAGTGAGTTTTCTCAAGGCTGCACCTCTTTTGGAAGAACTCGTACTAACGACACGAGCTTATAGCTATCAAGGAGAGATCGGGAATCTTTCCGGATTCTCACATAATCATTTAAGAAAAGTGAAAATGCAGGGGTTCCAAGGCAAGCGGTTAGAGATAGAGTTGGCCATTTGCATTCTTAAATTTGCAACAAAGCTTGAGGTAATGGTGATAGATACACTAGGAAAACACTACCACGGCTGTGGAAGGTGGACCAATTACGATTGTTCTTATTATCAGGAGGGGAATGAGGACGAGAATGAGGATGTGGACTCTGAGGAACGGAGAGAGGATGAGAACAAGAACGAAGAAGGGACACAGCATGAAAACGAGGAGGACAATGAGGTTGAGGAAGGGAGTGAGCATGAGAACAAGAACGAGGATGAGAATGAGGATGACGATGAAGGGGTGGAGGCTCGGGAATTAAGCAAGGATGAAGACGAGGACAAAGATGAAGACAAGCCTTGGATTTTCCATTGGGAAAGAAGAGGTAGGGCAGTTGTCCAACAAAAGCTGAAAGAAGTAAAGACTGATGCTCAAGTCATCATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

270

Amino Acids

31.24

Weight (kDa)

4.64

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 25 - 166 1.5e-22 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 7 cut(s) 16, 169, 183, 278, 285, 415, 772
AluI AGCT 7 cut(s) 16, 169, 183, 278, 285, 415, 772
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 675
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 2 cut(s) 64, 439
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 702, 720
BbvI GCAGC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 472
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 356
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 702, 720
BpuEI CTTGAG 5 cut(s) 119, 155, 218, 437, 780
BsaJI CCNNGG 5 cut(s) 52, 211, 358, 454, 722
BsaWI WCCGGW 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 5 cut(s) 52, 211, 358, 454, 722
BseGI GGATG 6 cut(s) 529, 556, 646, 658, 697, 804
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 675
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 2 cut(s) 187, 297
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 526
BspEI TCCGGA 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 1 cut(s) 195
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 5 cut(s) 52, 211, 358, 454, 722
BssMI GATC 2 cut(s) 187, 297
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 4 cut(s) 52, 211, 358, 722
Bst2BI CACGAG 1 cut(s) 273
Bst6I CTCTTC 2 cut(s) 111, 739
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 2 cut(s) 52, 454
BstF5I GGATG 6 cut(s) 529, 556, 646, 658, 697, 804
BstKTI GATC 2 cut(s) 190, 300
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 187, 297
BstNSI RCATGY 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 702, 720
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 2 cut(s) 52, 454
BtsCI GGATG 6 cut(s) 529, 556, 646, 658, 697, 804
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 471
Csp6I GTAC 1 cut(s) 263
CviAII CATG 4 cut(s) 53, 176, 581, 623
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 1 cut(s) 534
DpnI GATC 2 cut(s) 189, 299
DpnII GATC 2 cut(s) 187, 297
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 111, 739
EarI CTCTTC 2 cut(s) 111, 739
Eco130I CCWWGG 4 cut(s) 52, 211, 358, 722
Eco47I GGWCC 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 675
EcoT14I CCWWGG 4 cut(s) 52, 211, 358, 722
ErhI CCWWGG 4 cut(s) 52, 211, 358, 722
FaeI CATG 4 cut(s) 56, 179, 584, 626
FaiI YATR 9 cut(s) 54, 66, 140, 177, 282, 324, 582, 624, 811
FaqI GGGAC 1 cut(s) 586
FatI CATG 4 cut(s) 52, 175, 580, 622
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 6 cut(s) 536, 563, 653, 665, 704, 791
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 440
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 312
Hin1II CATG 4 cut(s) 56, 179, 584, 626
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 6 cut(s) 24, 39, 103, 304, 315, 530
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 64, 439
Hpy166II GTNNAC 4 cut(s) 72, 123, 471, 529
Hpy188I TCNGA 2 cut(s) 202, 535
Hpy188III TCNNGA 4 cut(s) 301, 312, 497, 677
Hpy8I GTNNAC 4 cut(s) 72, 123, 471, 529
HpyAV CCTTC 5 cut(s) 102, 459, 563, 605, 656
HpyCH4V TGCA 5 cut(s) 115, 242, 349, 393, 407
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 4 cut(s) 56, 179, 584, 626
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 2 cut(s) 187, 297
LpnPI CCDG 5 cut(s) 116, 156, 325, 335, 482
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 781
MaeI CTAG 1 cut(s) 440
MalI GATC 2 cut(s) 189, 299
MboI GATC 2 cut(s) 187, 297
MboII GAAGA 6 cut(s) 98, 266, 578, 707, 725, 756
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 196, 401, 475, 680
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 2 cut(s) 97, 524
MmeI TCCRAC 2 cut(s) 179, 787
Mox20I TGGCCA 1 cut(s) 386
MroI TCCGGA 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 386
MseI TTAA 4 cut(s) 195, 332, 399, 683
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 393
NcoI CCATGG 1 cut(s) 52
NdeII GATC 2 cut(s) 187, 297
NlaIII CATG 4 cut(s) 56, 179, 584, 626
NlaIV GGNNCC 1 cut(s) 356
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 459
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 24, 39, 304, 315
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 2 cut(s) 97, 524
PpsI GAGTC 2 cut(s) 97, 524
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 471
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 4 cut(s) 195, 332, 399, 683
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 187, 297
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 2 cut(s) 97, 524
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 5 cut(s) 98, 170, 233, 416, 795
SmoI CTYRAG 5 cut(s) 98, 170, 233, 416, 795
Sse9I AATT 4 cut(s) 196, 401, 475, 680
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 440
StyI CCWWGG 4 cut(s) 52, 211, 358, 722
TasI AATT 4 cut(s) 196, 401, 475, 680
TfiI GAWTC 4 cut(s) 24, 39, 304, 315
Tru1I TTAA 4 cut(s) 195, 332, 399, 683
Tru9I TTAA 4 cut(s) 195, 332, 399, 683
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 6 cut(s) 17, 98, 597, 675, 708, 726
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.