RchiOBHm_Chr3g0476211

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000084
Physical Location & Seq
Reverse (-)
22190700 .. 22195637
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44164

Sequence Viewer

Length: 1749 bp
ATGGGTTTTGATGTTAGAAAGGATGACAAGAGAACAAGTGCAAGGACTGGGAGAGTCACTATCCGCAAATGGGTTTGTTCTGCAGAGGGGGAAAGACTAGAGAAATATATGGACAACAATAATAATGTCCGTATGCCAAAGAAATTGACAAGGTGTCACTGCCCATGTTTGTTCAAGGTAAGGTACTTCAAGGAGAAGAACTCGTATGTCGTAGTTGATTTCAAAACAGATCATTCACATGATCTTGCACAGCCACAGGAGTCTCATTTTCTTAGGTCACATCGGTCTGTCCCAGATTCTCATTTAGCTTTAGCCACATCTATGCGGAGAGTATCCATTAAGACTTGTCATGCATATCAATACATGGCTGACATATCTGGAGGGTTTGCGAATGTTGGTTTCAAAATGAAAGACTTGTACAATAAATTGGACTCGAGTCAACATGAAATTGTACTTGAAGGGGATGCAAAAGCTACACTTGCCTATCTTGAAGGAAAAGCAGCTGAAGATAAGAAATTATTTTGCAAGTATAGCACATATGAGAGTAACAGGTTGGCCAACTTATTTTGGAGAGACTCAACTTCATTGCTAGATTATTGTTGTTTTGGGGATGTTTTGGTATTTGATAGCACCTATAAGACTAATCACTATGGGAAGCCCTTGGTATTGTTCGTGGGATCAAACAACCATCTATTGACTACAATTTTTGGTTTTGCATTATTGGTAGATGAAACAGTTGAGACATACACATGGGTTTTGCAGATGTTCTTAGAGTCTATGGAGGGCAAAAAACCTCTGGGCATTTTGACCGACGGTGATGAAGCAATGAGAAAGGCTATTGAACTAGTGGTTCCAGGTTGTCCACATCGTTTATGTACATGGCATATTTCTAAAAATGCTCAGAAAAAATTACACAACCCTGAAACAGTTGCAGAGTTCAGACGTTGCATGTTTGATGAAACAACTCCTTGTGGTTTTGAGCAACGATGGAGAGCTATGGTGGAAAAATATGGTCTTCATAATAGAAATTGGGTGAAGATGATGTATGATAAACGAGAGAAATGGGCTGAAGCATTTGTGAGTGGACATTTTTTCGCTCGCATGCGTAGCACGCAGCGATGTGAACGCATGAATAGGTATGTGAAGGATAGTCTCAGCTTCAGTGGAGTGAAATTGATTGAACTCATTCCGCAGCTTGATAAAGCATTGGAACGACTTAGAAATAAAGTAGCTGAAGAAGATTTTCGATCGAATAACTCCGCTCATGCACTTTCTACCCAACTCAGACAGTTAGAGAAGCATGCCTCTACCATTTATACGGATAATGTGTTTCAACTAATATGTGTGGAGATAGATCGAGTTGGAGGACTGATAACTTCAAGGATTATGCATCTGAATTCATGTCGTGTGTACATTACGTCTAGTTATAACAATGATGAAGAGAAAGAGTGCACAACTACTTATTACCATCGGGAAAGTGATCCTCGAGTAGTATGCTCTTGCAAACTTTATGAATGTGAAGGCATCCCATGTTCTCATTTATTTAATGTAATGAAGCATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGCGGTGGACAAAGCAAGCAAAATCTGAAGTTCACTCCACAGTTCCCAAGGAAAATATGCCTAGTGAAGCTGTACGATTGGCCAGGGACATAAACATCCTTGTTAATATCAGTGATATATTTTTTTTTATTTCATATAATAAGTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

582

Amino Acids

67.72

Weight (kDa)

8.86

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 1 - 83 7.5e-12 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 200 - 261 4.2e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 205 - 299 9.8e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1428
AccBSI CCGCTC 1 cut(s) 1262
AciI CCGC 5 cut(s) 64, 325, 1190, 1260, 1600
AclWI GGATC 2 cut(s) 685, 1475
AcoI YGGCCR 2 cut(s) 555, 1677
AcsI RAATTY 1 cut(s) 1396
AcuI CTGAAG 5 cut(s) 525, 1089, 1144, 1254, 1644
AfaI GTAC 6 cut(s) 185, 419, 453, 877, 1412, 1671
AfiI CCNNNNNNNGG 1 cut(s) 70
AhdI GACNNNNNGTC 1 cut(s) 153
AhlI ACTAGT 1 cut(s) 844
AjnI CCWGG 2 cut(s) 853, 1679
AluBI AGCT 8 cut(s) 308, 473, 503, 995, 1158, 1195, 1232, 1667
AluI AGCT 8 cut(s) 308, 473, 503, 995, 1158, 1195, 1232, 1667
Alw21I GWGCWC 1 cut(s) 1454
Alw26I GTCTC 4 cut(s) 267, 567, 734, 1157
Alw44I GTGCAC 1 cut(s) 1450
AlwI GGATC 2 cut(s) 685, 1475
Ama87I CYCGRG 2 cut(s) 433, 1485
AoxI GGCC 2 cut(s) 555, 1677
ApaLI GTGCAC 1 cut(s) 1450
ApeKI GCWGC 3 cut(s) 500, 1114, 1192
ApoI RAATTY 1 cut(s) 1396
Asp700I GAANNNNTTC 2 cut(s) 1185, 1242
AspLEI GCGC 1 cut(s) 1566
AsuHPI GGTGA 2 cut(s) 827, 1045
AvaI CYCGRG 2 cut(s) 433, 1485
BaeGI GKGCMC 1 cut(s) 1454
BaeI ACNNNNGTAYC 2 cut(s) 1568, 1601
BalI TGGCCA 2 cut(s) 557, 1679
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 1454
BbvI GCAGC 3 cut(s) 512, 1126, 1204
BccI CCATC 3 cut(s) 696, 981, 1476
BcgI CGANNNNNNTGC 2 cut(s) 1476, 1510
BciT130I CCWGG 2 cut(s) 855, 1681
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 4 cut(s) 267, 567, 734, 1157
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 5 cut(s) 98, 590, 845, 1422, 1659
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 3 cut(s) 501, 1115, 1193
BlsI GCNGC 3 cut(s) 502, 1116, 1194
Bme1390I CCNGG 2 cut(s) 855, 1681
BmeRI GACNNNNNGTC 1 cut(s) 153
BmeT110I CYCGRG 2 cut(s) 433, 1485
BmiI GGNNCC 1 cut(s) 852
BmrFI CCNGG 2 cut(s) 855, 1681
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 3 cut(s) 454, 1399, 1533
BmuI ACTGGG 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 1007
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 660, 1644, 1680
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 584, 831
BseBI CCWGG 2 cut(s) 855, 1681
BseDI CCNNGG 3 cut(s) 660, 1644, 1680
BseGI GGATG 5 cut(s) 28, 469, 616, 1524, 1692
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 2 cut(s) 584, 831
BseMII CTCAG 3 cut(s) 914, 1168, 1297
BseNI ACTGG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 1454
BseXI GCAGC 3 cut(s) 512, 1126, 1204
Bsh1285I CGRYCG 1 cut(s) 1250
BshFI GGCC 2 cut(s) 557, 1679
BsiEI CGRYCG 1 cut(s) 1250
BsiHKAI GWGCWC 1 cut(s) 1454
BsiHKCI CYCGRG 2 cut(s) 433, 1485
BslFI GGGAC 2 cut(s) 275, 1697
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 4 cut(s) 267, 567, 734, 1157
BsmFI GGGAC 2 cut(s) 275, 1697
BsnI GGCC 2 cut(s) 557, 1679
BsoBI CYCGRG 2 cut(s) 433, 1485
Bsp1286I GDGCHC 1 cut(s) 1454
Bsp1407I TGTACA 3 cut(s) 417, 875, 1410
Bsp143I GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
BspACI CCGC 5 cut(s) 64, 325, 1190, 1260, 1600
BspANI GGCC 2 cut(s) 557, 1679
BspCNI CTCAG 3 cut(s) 913, 1167, 1296
BspLI GGNNCC 1 cut(s) 852
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 685, 1475
BsrBI CCGCTC 1 cut(s) 1262
BsrDI GCAATG 2 cut(s) 584, 831
BsrGI TGTACA 3 cut(s) 417, 875, 1410
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 660, 1644, 1680
BssMI GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
BssT1I CCWWGG 2 cut(s) 660, 1644
Bst2UI CCWGG 2 cut(s) 855, 1681
Bst4CI ACNGT 5 cut(s) 736, 815, 928, 1290, 1639
Bst6I CTCTTC 1 cut(s) 1434
BstAUI TGTACA 3 cut(s) 417, 875, 1410
BstC8I GCNNGC 5 cut(s) 1099, 1103, 1112, 1302, 1614
BstDEI CTNAG 7 cut(s) 272, 769, 900, 1154, 1217, 1283, 1588
BstF5I GGATG 5 cut(s) 28, 469, 616, 1524, 1692
BstHHI GCGC 1 cut(s) 1566
BstKTI GATC 6 cut(s) 232, 244, 680, 1250, 1357, 1483
BstMAI GTCTC 4 cut(s) 267, 567, 734, 1157
BstMBI GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
BstMCI CGRYCG 1 cut(s) 1250
BstMWI GCNNNNNNNGC 4 cut(s) 479, 531, 1107, 1111
BstNI CCWGG 2 cut(s) 855, 1681
BstNSI RCATGY 3 cut(s) 952, 1105, 1304
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 2 cut(s) 853, 1679
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 1454
BstV1I GCAGC 3 cut(s) 512, 1126, 1204
BstV2I GAAGAC 1 cut(s) 1007
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 2 cut(s) 557, 1679
BtgZI GCGATG 1 cut(s) 1132
BtsCI GGATG 5 cut(s) 28, 469, 616, 1524, 1692
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 1168, 1714
Cac8I GCNNGC 5 cut(s) 1099, 1103, 1112, 1302, 1614
CfoI GCGC 1 cut(s) 1566
Csp6I GTAC 6 cut(s) 184, 418, 452, 876, 1411, 1670
CviQI GTAC 6 cut(s) 184, 418, 452, 876, 1411, 1670
DdeI CTNAG 7 cut(s) 272, 769, 900, 1154, 1217, 1283, 1588
DpnI GATC 6 cut(s) 231, 243, 679, 1249, 1356, 1482
DpnII GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
DriI GACNNNNNGTC 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 555, 1677
Eam1104I CTCTTC 1 cut(s) 1434
Eam1105I GACNNNNNGTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 1434
Eco130I CCWWGG 2 cut(s) 660, 1644
Eco57I CTGAAG 5 cut(s) 525, 1089, 1144, 1254, 1644
Eco88I CYCGRG 2 cut(s) 433, 1485
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 2 cut(s) 853, 1679
EcoT14I CCWWGG 2 cut(s) 660, 1644
EcoT22I ATGCAT 2 cut(s) 355, 1392
ErhI CCWWGG 2 cut(s) 660, 1644
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 2 cut(s) 275, 1697
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 501, 1115, 1193
FokI GGATG 5 cut(s) 35, 476, 623, 1511, 1679
Fsp4HI GCNGC 3 cut(s) 501, 1115, 1193
FspBI CTAG 5 cut(s) 98, 590, 845, 1422, 1659
GlaI GCGC 1 cut(s) 1565
GluI GCNGC 3 cut(s) 501, 1115, 1193
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 557, 1679
HhaI GCGC 1 cut(s) 1566
Hin6I GCGC 1 cut(s) 1564
HinP1I GCGC 1 cut(s) 1564
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HinfI GANTC 7 cut(s) 54, 260, 296, 431, 436, 575, 773
HphI GGTGA 2 cut(s) 827, 1045
Hpy166II GTNNAC 8 cut(s) 440, 863, 1085, 1124, 1411, 1452, 1605, 1630
Hpy188I TCNGA 5 cut(s) 903, 941, 1286, 1395, 1624
Hpy188III TCNNGA 3 cut(s) 378, 488, 1472
Hpy8I GTNNAC 8 cut(s) 440, 863, 1085, 1124, 1411, 1452, 1605, 1630
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 4 cut(s) 452, 485, 1138, 1514
HpyCH4III ACNGT 5 cut(s) 736, 815, 928, 1290, 1639
HpyCH4IV ACGT 2 cut(s) 943, 1418
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 531, 1107, 1111
HpyF3I CTNAG 7 cut(s) 272, 769, 900, 1154, 1217, 1283, 1588
HpySE526I ACGT 2 cut(s) 943, 1418
HspAI GCGC 1 cut(s) 1564
Kzo9I GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
Lsp1109I GCAGC 3 cut(s) 512, 1126, 1204
LweI GCATC 3 cut(s) 454, 1399, 1533
MaeI CTAG 5 cut(s) 98, 590, 845, 1422, 1659
MaeII ACGT 2 cut(s) 943, 1418
MaeIII GTNAC 4 cut(s) 55, 155, 276, 545
MalI GATC 6 cut(s) 231, 243, 679, 1249, 1356, 1482
MbiI CCGCTC 1 cut(s) 1262
MboI GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
MboII GAAGA 7 cut(s) 208, 518, 1007, 1048, 1247, 1250, 1451
MhlI GDGCHC 1 cut(s) 1454
MlsI TGGCCA 2 cut(s) 557, 1679
MluCI AATT 9 cut(s) 143, 425, 447, 515, 702, 908, 1027, 1172, 1396
MluNI TGGCCA 2 cut(s) 557, 1679
MlyI GAGTC 6 cut(s) 63, 269, 425, 445, 569, 782
MmeI TCCRAC 1 cut(s) 1342
MnlI CCTC 8 cut(s) 79, 374, 775, 804, 1315, 1358, 1494, 1563
Mox20I TGGCCA 2 cut(s) 557, 1679
Mph1103I ATGCAT 2 cut(s) 355, 1392
MroXI GAANNNNTTC 2 cut(s) 1185, 1242
MscI TGGCCA 2 cut(s) 557, 1679
MseI TTAA 5 cut(s) 339, 1545, 1595, 1701, 1742
MslI CAYNNNNRTG 3 cut(s) 237, 320, 748
Msp20I TGGCCA 2 cut(s) 557, 1679
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 855, 1681
MvaI CCWGG 2 cut(s) 855, 1681
MwoI GCNNNNNNNGC 4 cut(s) 479, 531, 1107, 1111
NdeI CATATG 1 cut(s) 538
NdeII GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
NlaIV GGNNCC 1 cut(s) 852
NmuCI GTSAC 3 cut(s) 55, 155, 276
NsiI ATGCAT 2 cut(s) 355, 1392
NspI RCATGY 3 cut(s) 952, 1105, 1304
PaeI GCATGC 2 cut(s) 1105, 1304
PaeR7I CTCGAG 2 cut(s) 433, 1485
PdmI GAANNNNTTC 2 cut(s) 1185, 1242
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 502, 1116, 1194
Ple19I CGATCG 1 cut(s) 1250
PleI GAGTC 6 cut(s) 62, 268, 425, 444, 569, 781
PpsI GAGTC 6 cut(s) 62, 268, 425, 444, 569, 781
PshAI GACNNNNGTC 1 cut(s) 435
PsiI TTATAA 1 cut(s) 1428
Psp6I CCWGG 2 cut(s) 853, 1679
PspGI CCWGG 2 cut(s) 853, 1679
PspN4I GGNNCC 1 cut(s) 852
PspXI VCTCGAGB 2 cut(s) 433, 1485
PstI CTGCAG 1 cut(s) 85
PvuI CGATCG 1 cut(s) 1250
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 6 cut(s) 185, 419, 453, 877, 1412, 1671
RsaNI GTAC 6 cut(s) 184, 418, 452, 876, 1411, 1670
RseI CAYNNNNRTG 3 cut(s) 237, 320, 748
SaqAI TTAA 5 cut(s) 339, 1545, 1595, 1701, 1742
SatI GCNGC 3 cut(s) 501, 1115, 1193
Sau3AI GATC 6 cut(s) 229, 241, 677, 1247, 1354, 1480
SchI GAGTC 6 cut(s) 63, 269, 425, 445, 569, 782
ScrFI CCNGG 2 cut(s) 855, 1681
SduI GDGCHC 1 cut(s) 1454
SfaNI GCATC 3 cut(s) 454, 1399, 1533
SfcI CTRYAG 1 cut(s) 81
Sfr274I CTCGAG 2 cut(s) 433, 1485
SlaI CTCGAG 2 cut(s) 433, 1485
SmiMI CAYNNNNRTG 3 cut(s) 237, 320, 748
SmlI CTYRAG 2 cut(s) 433, 1485
SmoI CTYRAG 2 cut(s) 433, 1485
SpeI ACTAGT 1 cut(s) 844
SphI GCATGC 2 cut(s) 1105, 1304
Sse9I AATT 9 cut(s) 143, 425, 447, 515, 702, 908, 1027, 1172, 1396
SsiI CCGC 5 cut(s) 64, 325, 1190, 1260, 1600
SspMI CTAG 5 cut(s) 98, 590, 845, 1422, 1659
StyD4I CCNGG 2 cut(s) 853, 1679
StyI CCWWGG 2 cut(s) 660, 1644
TaaI ACNGT 5 cut(s) 736, 815, 928, 1290, 1639
TaiI ACGT 2 cut(s) 946, 1421
TaqI TCGA 5 cut(s) 434, 1246, 1250, 1357, 1486
TaqII GACCGA 2 cut(s) 273, 824
TasI AATT 9 cut(s) 143, 425, 447, 515, 702, 908, 1027, 1172, 1396
TatI WGTACW 4 cut(s) 417, 451, 875, 1410
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 5 cut(s) 339, 1545, 1595, 1701, 1742
Tru9I TTAA 5 cut(s) 339, 1545, 1595, 1701, 1742
TscAI CASTG 3 cut(s) 164, 1168, 1714
TseFI GTSAC 3 cut(s) 55, 155, 276
TseI GCWGC 3 cut(s) 500, 1114, 1192
Tsp45I GTSAC 3 cut(s) 55, 155, 276
TspGWI ACGGA 2 cut(s) 119, 1334
TspRI CASTG 3 cut(s) 164, 1168, 1714
VneI GTGCAC 1 cut(s) 1450
XapI RAATTY 1 cut(s) 1396
XceI RCATGY 3 cut(s) 952, 1105, 1304
XhoI CTCGAG 2 cut(s) 433, 1485
XmnI GAANNNNTTC 2 cut(s) 1185, 1242
XspI CTAG 5 cut(s) 98, 590, 845, 1422, 1659
Zsp2I ATGCAT 2 cut(s) 355, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.