Rroxscaffold_2G00125110

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000084
Physical Location & Seq
Forward (+)
59699551 .. 59702808
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125110.1

Sequence Viewer

Length: 1923 bp
ATGTCAAGTGTAGACATATCAAACGAAGTTCTAATTTCCAATGCTAATTTGCAAGTGCAAAATATGGAGAGTGGAAGTGACATGAATCATCTGCAATATAATTGTGTTAGATTTGATAGATTGTCTGCGAATGATGTTCTAGGCAAGGAGTTTAAATCTGTTGAGGAAGCAGAGATCTTTTATTTTGCTTACGCCAAGGCAATGGTGTTTGATGTTAGAAAGGATGGCAAGTATGTAAGTGCAAGGATGAGGAGAGTCACAATCCGTCAATTGGTTTGTTCTGCACAAGGGAAGAGACGGGAGGAATATATGAACAACAGTAACAAGGTCCGTATGCCAAAAAAATTGACAAGGTGTAATTGTCCATGTTTGTTCAAGGTAAGATATTTTAAGAAGAAGAACTCGTATGTTGTAGTTGATTTCAAAACAAACCATTCCCATGATCATGCACAGCCACACGAGTCACATCTTCTCAAGTCACATCGATCTATACCAGATTCTCAGTTAGCATTAGCTAAATCTATGAGGAGAGTACCGATTAAGGTTTGTCATACATACCAATACATGGCTGACAGAGCTGGAGGCCTTACGAAAGTCAGATTTCTAAGGAAAGATCTGTACAATAAGTTGGATATAAGTCGTCGAGAGGCTCTACTTGAAGGGGATGCAAAAGCTGCACTTTCATATTTGGAAGGAAAAGCAGCCACAGGTAAGAAGTTATTTTACAAGTATAGCACAGATGAGAGTAACAGGTTGGCTAACTTGTTTTGGAGAGACTCAACTTCATTGCTTGATTATTCTTGTTTCGGAGATGTGTTGGTATTTGACAGCACGTACAAGACCAATCACTATGAGAAGCCGTTGGTATTATTTGCTGGTTCAAACCATCATTTATCGACTACGATTTTTGGTTTTGCATTACTAGTTGATGAGACGGTTGAGACATATACATGGGCTTTGCAAATGTTTTTAGAGTCTATGGAGGGCAAAAAACCCATTGCTGTGCTAACTGATGGAGATGAAGCAATGCGGAAGGCTATTGAAGTAGTATTTCCAGATTGCCCACATCGTTTATGTACATGGCATATTGCAAAGAATGCTCAAAGTAACTTGCATAATCCAGAAGTAATTGCAGAGTTTCAGAGATGTATGTTTGATGAAGCAACCCCATATGGTTTTGAGCAACGGTGGAATGATATGGTGAACAAATTTGATCTTCATGATAAAAATTGGGTAAGGATGATGTATGAAAAATGGGCTGAAGCGTTTATTAGTGGTCATTTTTTTGCTCGAATGCGTAGTACCCAGCGGTGTGAGGGCATGAACAATTGTGTGAAGGATTATCTTAGCACTGGAGTGAAATTGTTTGAACTGATGCCACTACTTGATTCAGCATTAGCACGGCTTAGAAATAATGTACTTCAAGAAGACTTCCGATCAAATAACTCTAGTCATGTGCTTACTACTCAACTCCGACAGTTGGAGAAACATGCATCCACCATTTACACTGACAGTGTATTTTACCTAGTACGTGAGGAGATAGAGCGGGTTGGAGGACTGATCACTTCAAGAATTATGCATTTTCGCCCAAGTCGTGTGTACATAACATCCAATTATAATAACAATGAAGAGAATGAGTGCACGACTGTTTACCACCATCTGGAAAGCAATCCTCGCATAGTATGCTCTTGTAAACTTTTTGAATGTGAGGGCATCCCATGTTGCCATTCATTTAACATTATGAAGCACGAACATATGAAGGAGATACCTTTGTCTTTGGTGATGAAACGGTGGACAAAACACGCAAAATCTGAAATTCAATCCACAATTCCTGAGGACAATATACCTAGTGAAGCTCTACAATTGATCAGGTACGCAAATGCTTATACCGCAAAGTTGATCTCAGTTGTTACTTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

640

Amino Acids

74.24

Weight (kDa)

8.74

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 60 - 148 4.6e-12 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 244 - 354 3.3e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 272 - 366 1.7e-28 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1617
AccB7I CCANNNNNTGG 2 cut(s) 565, 1660
AccBSI CCGCTC 1 cut(s) 1546
AccI GTMKAC 1 cut(s) 12
AciI CCGC 4 cut(s) 1030, 1309, 1546, 1890
AcsI RAATTY 2 cut(s) 1208, 1815
AcuI CTGAAG 1 cut(s) 1281
AfaI GTAC 9 cut(s) 534, 620, 836, 1078, 1303, 1419, 1530, 1601, 1874
AfiI CCNNNNNNNGG 4 cut(s) 271, 565, 1480, 1660
AhlI ACTAGT 1 cut(s) 922
AleI CACNNNNGTG 1 cut(s) 1355
AluBI AGCT 4 cut(s) 515, 578, 674, 1856
AluI AGCT 4 cut(s) 515, 578, 674, 1856
Alw21I GWGCWC 1 cut(s) 1643
Alw26I GTCTC 4 cut(s) 289, 768, 926, 935
Alw44I GTGCAC 1 cut(s) 1639
AoxI GGCC 1 cut(s) 583
ApaLI GTGCAC 1 cut(s) 1639
ApeKI GCWGC 2 cut(s) 674, 701
ApoI RAATTY 2 cut(s) 1208, 1815
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 1213, 1792
AvaII GGWCC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 1833
BaeGI GKGCMC 1 cut(s) 1643
BaeI ACNNNNGTAYC 2 cut(s) 1757, 1790
BarI GAAGNNNNNNTAC 2 cut(s) 707, 739
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 1434
Bbv12I GWGCWC 1 cut(s) 1643
BbvI GCAGC 2 cut(s) 661, 713
BccI CCATC 4 cut(s) 218, 894, 1007, 1665
BceAI ACGGC 2 cut(s) 844, 1418
BclI TGATCA 3 cut(s) 442, 1560, 1866
BcoDI GTCTC 4 cut(s) 289, 768, 926, 935
BcuI ACTAGT 1 cut(s) 922
BfaI CTAG 5 cut(s) 140, 923, 1449, 1526, 1848
BglII AGATCT 2 cut(s) 174, 613
BisI GCNGC 2 cut(s) 675, 702
BlsI GCNGC 2 cut(s) 676, 703
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmsI GCATC 4 cut(s) 655, 1365, 1502, 1722
BpiI GAAGAC 1 cut(s) 1434
BpmI CTGGAG 2 cut(s) 600, 1374
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 484
BsaAI YACGTR 2 cut(s) 834, 1532
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 565, 1480, 1660
Bse1I ACTGG 1 cut(s) 1357
Bse21I CCTNAGG 1 cut(s) 1833
Bse3DI GCAATG 4 cut(s) 207, 785, 996, 1032
BseCI ATCGAT 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 7 cut(s) 229, 252, 670, 1245, 1493, 1607, 1713
BseLI CCNNNNNNNGG 4 cut(s) 271, 565, 1480, 1660
BseMI GCAATG 4 cut(s) 207, 785, 996, 1032
BseMII CTCAG 3 cut(s) 515, 1824, 1917
BseNI ACTGG 1 cut(s) 1357
BseRI GAGGAG 3 cut(s) 265, 541, 1550
BseSI GKGCMC 1 cut(s) 1643
BseXI GCAGC 2 cut(s) 661, 713
BseYI CCCAGC 1 cut(s) 1305
BsgI GTGCAG 2 cut(s) 267, 660
BshFI GGCC 1 cut(s) 585
BshVI ATCGAT 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 1643
BslI CCNNNNNNNGG 4 cut(s) 271, 565, 1480, 1660
BsmAI GTCTC 4 cut(s) 289, 768, 926, 935
BsmBI CGTCTC 2 cut(s) 289, 926
BsmI GAATGC 2 cut(s) 1102, 1299
BsnI GGCC 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 1643
Bsp1407I TGTACA 3 cut(s) 618, 1076, 1599
Bsp143I GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
BspACI CCGC 4 cut(s) 1030, 1309, 1546, 1890
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 3 cut(s) 514, 1825, 1916
BspDI ATCGAT 1 cut(s) 484
BspHI TCATGA 1 cut(s) 1219
BsrBI CCGCTC 1 cut(s) 1546
BsrDI GCAATG 4 cut(s) 207, 785, 996, 1032
BsrGI TGTACA 3 cut(s) 618, 1076, 1599
BsrI ACTGG 1 cut(s) 1357
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 458
Bst4CI ACNGT 7 cut(s) 320, 937, 1188, 1479, 1514, 1648, 1791
Bst6I CTCTTC 2 cut(s) 287, 1623
BstAPI GCANNNNNTGC 3 cut(s) 674, 1097, 1683
BstAUI TGTACA 3 cut(s) 618, 1076, 1599
BstBAI YACGTR 2 cut(s) 834, 1532
BstDEI CTNAG 6 cut(s) 501, 605, 1346, 1406, 1833, 1903
BstF5I GGATG 7 cut(s) 229, 252, 670, 1245, 1493, 1607, 1713
BstKTI GATC 9 cut(s) 177, 445, 488, 616, 1216, 1439, 1563, 1869, 1902
BstMAI GTCTC 4 cut(s) 289, 768, 926, 935
BstMBI GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
BstMWI GCNNNNNNNGC 6 cut(s) 575, 674, 1097, 1674, 1683, 1889
BstNSI RCATGY 1 cut(s) 1493
BstSLI GKGCMC 1 cut(s) 1643
BstV1I GCAGC 2 cut(s) 661, 713
BstV2I GAAGAC 1 cut(s) 1434
BstX2I RGATCY 2 cut(s) 174, 613
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 174, 613
Bsu15I ATCGAT 1 cut(s) 484
Bsu36I CCTNAGG 1 cut(s) 1833
BsuRI GGCC 1 cut(s) 585
BsuTUI ATCGAT 1 cut(s) 484
BtsCI GGATG 7 cut(s) 229, 252, 670, 1245, 1493, 1607, 1713
BtsIMutI CAGTG 3 cut(s) 1350, 1506, 1519
CciI TCATGA 1 cut(s) 1219
Cfr13I GGNCC 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 484
Csp6I GTAC 9 cut(s) 533, 619, 835, 1077, 1302, 1418, 1529, 1600, 1873
CviQI GTAC 9 cut(s) 533, 619, 835, 1077, 1302, 1418, 1529, 1600, 1873
DdeI CTNAG 6 cut(s) 501, 605, 1346, 1406, 1833, 1903
DpnI GATC 9 cut(s) 176, 444, 487, 615, 1215, 1438, 1562, 1868, 1901
DpnII GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
DraI TTTAAA 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 287, 1623
EarI CTCTTC 2 cut(s) 287, 1623
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 1281
Eco81I CCTNAGG 1 cut(s) 1833
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 2 cut(s) 1495, 1581
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 2 cut(s) 289, 926
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FauI CCCGC 1 cut(s) 1539
FauNDI CATATG 2 cut(s) 1171, 1755
FbaI TGATCA 3 cut(s) 442, 1560, 1866
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 675, 702
FokI GGATG 7 cut(s) 236, 259, 677, 1252, 1480, 1594, 1700
Fsp4HI GCNGC 2 cut(s) 675, 702
FspBI CTAG 5 cut(s) 140, 923, 1449, 1526, 1848
GluI GCNGC 2 cut(s) 675, 702
GsaI CCCAGC 1 cut(s) 1309
GsuI CTGGAG 2 cut(s) 600, 1374
HaeIII GGCC 1 cut(s) 585
HinfI GANTC 7 cut(s) 85, 255, 461, 497, 776, 974, 1388
HphI GGTGA 2 cut(s) 1213, 1792
Hpy166II GTNNAC 7 cut(s) 13, 1204, 1600, 1641, 1651, 1694, 1794
Hpy188I TCNGA 6 cut(s) 599, 809, 1143, 1436, 1475, 1813
Hpy188III TCNNGA 8 cut(s) 644, 1055, 1121, 1220, 1424, 1569, 1661, 1832
Hpy8I GTNNAC 7 cut(s) 13, 1204, 1600, 1641, 1651, 1694, 1794
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 5 cut(s) 653, 686, 1027, 1330, 1753
HpyCH4III ACNGT 7 cut(s) 320, 937, 1188, 1479, 1514, 1648, 1791
HpyCH4IV ACGT 2 cut(s) 833, 1531
HpyF10VI GCNNNNNNNGC 6 cut(s) 575, 674, 1097, 1674, 1683, 1889
HpyF3I CTNAG 6 cut(s) 501, 605, 1346, 1406, 1833, 1903
HpySE526I ACGT 2 cut(s) 833, 1531
Ksp22I TGATCA 3 cut(s) 442, 1560, 1866
Kzo9I GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
Lsp1109I GCAGC 2 cut(s) 661, 713
LweI GCATC 4 cut(s) 655, 1365, 1502, 1722
MaeI CTAG 5 cut(s) 140, 923, 1449, 1526, 1848
MaeII ACGT 2 cut(s) 833, 1531
MaeIII GTNAC 8 cut(s) 77, 256, 320, 462, 477, 746, 1106, 1909
MalI GATC 9 cut(s) 176, 444, 487, 615, 1215, 1438, 1562, 1868, 1901
MbiI CCGCTC 1 cut(s) 1546
MboI GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
MboII GAAGA 7 cut(s) 304, 406, 409, 461, 1208, 1439, 1640
MfeI CAATTG 3 cut(s) 269, 1327, 1862
MflI RGATCY 2 cut(s) 174, 613
MhlI GDGCHC 1 cut(s) 1643
MlyI GAGTC 4 cut(s) 264, 470, 770, 983
MmeI TCCRAC 4 cut(s) 609, 1461, 1498, 1531
Mph1103I ATGCAT 2 cut(s) 1495, 1581
MseI TTAA 4 cut(s) 153, 390, 540, 1734
MslI CAYNNNNRTG 5 cut(s) 438, 444, 949, 1001, 1355
MspA1I CMGCKG 1 cut(s) 1309
MunI CAATTG 3 cut(s) 269, 1327, 1862
Mva1269I GAATGC 2 cut(s) 1102, 1299
MwoI GCNNNNNNNGC 6 cut(s) 575, 674, 1097, 1674, 1683, 1889
NdeI CATATG 2 cut(s) 1171, 1755
NdeII GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
NmuCI GTSAC 4 cut(s) 77, 256, 462, 477
NsiI ATGCAT 2 cut(s) 1495, 1581
NspI RCATGY 1 cut(s) 1493
OliI CACNNNNGTG 1 cut(s) 1355
PagI TCATGA 1 cut(s) 1219
PceI AGGCCT 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 1591
PctI GAATGC 2 cut(s) 1102, 1299
PfeI GAWTC 3 cut(s) 85, 497, 1388
PflMI CCANNNNNTGG 2 cut(s) 565, 1660
PkrI GCNGC 2 cut(s) 676, 703
PleI GAGTC 4 cut(s) 263, 469, 770, 982
PpsI GAGTC 4 cut(s) 263, 469, 770, 982
Ppu21I YACGTR 2 cut(s) 834, 1532
PsiI TTATAA 1 cut(s) 1617
PspFI CCCAGC 1 cut(s) 1305
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 2 cut(s) 174, 613
RsaI GTAC 9 cut(s) 534, 620, 836, 1078, 1303, 1419, 1530, 1601, 1874
RsaNI GTAC 9 cut(s) 533, 619, 835, 1077, 1302, 1418, 1529, 1600, 1873
RseI CAYNNNNRTG 5 cut(s) 438, 444, 949, 1001, 1355
SaqAI TTAA 4 cut(s) 153, 390, 540, 1734
SatI GCNGC 2 cut(s) 675, 702
Sau3AI GATC 9 cut(s) 174, 442, 485, 613, 1213, 1436, 1560, 1866, 1899
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 4 cut(s) 264, 470, 770, 983
SduI GDGCHC 1 cut(s) 1643
SfaNI GCATC 4 cut(s) 655, 1365, 1502, 1722
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 5 cut(s) 438, 444, 949, 1001, 1355
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 922
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 4 cut(s) 1030, 1309, 1546, 1890
SspMI CTAG 5 cut(s) 140, 923, 1449, 1526, 1848
StuI AGGCCT 1 cut(s) 585
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 7 cut(s) 320, 937, 1188, 1479, 1514, 1648, 1791
TaiI ACGT 2 cut(s) 836, 1534
TaqI TCGA 4 cut(s) 484, 643, 896, 1291
TatI WGTACW 4 cut(s) 618, 1076, 1417, 1599
TfiI GAWTC 3 cut(s) 85, 497, 1388
Tru1I TTAA 4 cut(s) 153, 390, 540, 1734
Tru9I TTAA 4 cut(s) 153, 390, 540, 1734
TscAI CASTG 3 cut(s) 1357, 1513, 1519
TseFI GTSAC 4 cut(s) 77, 256, 462, 477
TseI GCWGC 2 cut(s) 674, 701
Tsp45I GTSAC 4 cut(s) 77, 256, 462, 477
TspGWI ACGGA 2 cut(s) 254, 320
TspRI CASTG 3 cut(s) 1357, 1513, 1519
Van91I CCANNNNNTGG 2 cut(s) 565, 1660
VneI GTGCAC 1 cut(s) 1639
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 2 cut(s) 1208, 1815
XceI RCATGY 1 cut(s) 1493
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 5 cut(s) 140, 923, 1449, 1526, 1848
Zsp2I ATGCAT 2 cut(s) 1495, 1581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.